Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8024B18.5 |
| Conread position: | 1349-1506 |
| Cow position: | chr12:19728044-19727886 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 1349-1514 |
| Cow position: | chr12:18467183-18467347 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 60 |
| Conread position: | 1349-1514 |
| Cow position: | chr12:21211062-21211229 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1349-1522 |
| Cow position: | chr12:21252190-21252017 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 1350-1515 |
| Cow position: | chr12:22747602-22747769 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1353-1477 |
| Cow position: | chr12:19872675-19872800 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1505 |
| Cow position: | chr12:1056642-1056799 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 1353-1515 |
| Cow position: | chr12:3363336-3363500 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1515 |
| Cow position: | chr12:21483798-21483955 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 86 |
| Conread position: | 1353-1515 |
| Cow position: | chr12:34964907-34964743 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1518 |
| Cow position: | chr12:28834930-28834764 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 37, 84 |
| Conread position: | 1353-1520 |
| Cow position: | chr12:20995366-20995197 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr12:1775524-1775353 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 1353-1521 |
| Cow position: | chr12:28764639-28764468 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr12:30686136-30686306 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr12:34175748-34175918 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr12:37561400-37561569 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 29, 56 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:1404664-1404834 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:3179763-3179934 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:3717879-3717708 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:12929492-12929321 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:18585067-18585238 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:20460830-20460659 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:21430354-21430525 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:22565461-22565630 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:22571238-22571409 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:22593149-22593320 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:24993576-24993405 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:32655946-32656117 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:33926128-33925957 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:35548737-35548566 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:36212648-36212819 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:38892753-38892924 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr12:42857135-42856964 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 35, 103 |
| Conread position: | 1353-1523 |
| Cow position: | chr12:42605785-42605613 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1354-1524 |
| Cow position: | chr12:21944511-21944683 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1357-1522 |
| Cow position: | chr12:8675679-8675507 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1357-1522 |
| Cow position: | chr12:11100643-11100810 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1357-1522 |
| Cow position: | chr12:12755760-12755593 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1357-1523 |
| Cow position: | chr12:757850-758013 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 65 |
| Conread position: | 1359-1522 |
| Cow position: | chr12:24980082-24980247 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1362-1480 |
| Cow position: | chr12:8064452-8064333 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1520 |
| Cow position: | chr12:22203271-22203115 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 25, 120 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:251435-251277 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:1056851-1057017 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:1886944-1886790 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 121, 23 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:17717701-17717863 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:21201148-21201310 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:23138917-23138758 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 1362-1522 |
| Cow position: | chr12:27853547-27853385 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1362-1523 |
| Cow position: | chr12:2284403-2284566 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 26, 129 |
| Conread position: | 1363-1522 |
| Cow position: | chr12:22518656-22518495 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1364-1521 |
| Cow position: | chr12:25261110-25260951 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1365-1523 |
| Cow position: | chr12:17968192-17968351 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 23, 136 |
| Conread position: | 1366-1522 |
| Cow position: | chr12:21074213-21074371 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 131 |
| Conread position: | 1366-1522 |
| Cow position: | chr12:25266929-25266771 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1378-1522 |
| Cow position: | chr12:25097846-25097702 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 135 |
| Conread position: | 1390-1523 |
| Cow position: | chr12:4397319-4397453 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1398-1515 |
| Cow position: | chr12:6106911-6106793 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 84, 0 |
Show alignments to all cow chromosomes.