Cow genome map

Conread name: Ss1.1-Pig4-TMW8024B18.5

Conread position: 1332-1523
Cow position: chr13:54144968-54145159 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 138
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 79

Conread position: 1344-1509
Cow position: chr13:10646767-10646934 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 0

Conread position: 1348-1522
Cow position: chr13:4943563-4943739 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 1349-1500
Cow position: chr13:60425182-60425333 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 39, 136

Conread position: 1349-1512
Cow position: chr13:30795514-30795350 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 38, 23

Conread position: 1349-1515
Cow position: chr13:30470196-30470028 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 1349-1522
Cow position: chr13:22215207-22215037 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 133, 13

Conread position: 1349-1522
Cow position: chr13:41338480-41338309 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 136

Conread position: 1349-1522
Cow position: chr13:60698620-60698446 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 114

Conread position: 1349-1523
Cow position: chr13:30653107-30652930 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 39, 0

Conread position: 1350-1522
Cow position: chr13:32548940-32549113 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 33, 72

Conread position: 1353-1463
Cow position: chr13:20572913-20572802 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1491
Cow position: chr13:5260952-5261092 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1501
Cow position: chr13:43591459-43591609 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 15

Conread position: 1353-1505
Cow position: chr13:34509627-34509473 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1515
Cow position: chr13:1883301-1883141 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 139

Conread position: 1353-1515
Cow position: chr13:15279607-15279443 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 132
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1515
Cow position: chr13:30240733-30240897 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1515
Cow position: chr13:34040158-34039994 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 129
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1520
Cow position: chr13:15922275-15922106 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1521
Cow position: chr13:4486037-4486207 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr13:5516144-5515974 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1521
Cow position: chr13:15559518-15559688 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1521
Cow position: chr13:31728714-31728545 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 27

Conread position: 1353-1521
Cow position: chr13:32794888-32795056 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 141

Conread position: 1353-1522
Cow position: chr13:562204-562033 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:3023097-3022926 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:3555594-3555765 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:3692764-3692593 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:4733716-4733887 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:4735460-4735631 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:5499804-5499633 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:6665951-6665780 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr13:11389390-11389561 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:11737939-11738110 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:11827541-11827373 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 134

Conread position: 1353-1522
Cow position: chr13:13327126-13327292 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr13:13902047-13902215 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 34, 26

Conread position: 1353-1522
Cow position: chr13:18122688-18122517 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:19230528-19230359 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr13:19565897-19566072 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 35, 99

Conread position: 1353-1522
Cow position: chr13:19637329-19637499 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 34, 111

Conread position: 1353-1522
Cow position: chr13:22614821-22614988 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr13:23455622-23455793 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:24932610-24932439 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:26846664-26846831 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 90

Conread position: 1353-1522
Cow position: chr13:28527724-28527553 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:31731380-31731214 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr13:32080047-32080218 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:32923087-32922919 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 8

Conread position: 1353-1522
Cow position: chr13:33334165-33333994 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 103

Conread position: 1353-1522
Cow position: chr13:34344096-34344267 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr13:34870146-34870316 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 35, 75

Conread position: 1353-1522
Cow position: chr13:35759742-35759911 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 34, 91

Conread position: 1353-1522
Cow position: chr13:36671838-36672010 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:49975858-49976023 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 35, 131

Conread position: 1353-1522
Cow position: chr13:50191442-50191271 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 37, 0

Conread position: 1353-1522
Cow position: chr13:51466016-51465845 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr13:54239247-54239072 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 97

Conread position: 1353-1522
Cow position: chr13:60647398-60647231 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr13:61953421-61953592 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1523
Cow position: chr13:669430-669601 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 145
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 131, 0

Conread position: 1353-1523
Cow position: chr13:5230762-5230594 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 35, 132

Conread position: 1353-1523
Cow position: chr13:36347934-36347765 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 14

Conread position: 1353-1524
Cow position: chr13:3652080-3651904 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1524
Cow position: chr13:44324774-44324598 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 1354-1523
Cow position: chr13:34050884-34051054 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 40, 151

Conread position: 1357-1518
Cow position: chr13:21906749-21906587 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 34

Conread position: 1357-1521
Cow position: chr13:20539669-20539513 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 118, 83

Conread position: 1357-1521
Cow position: chr13:31509095-31509262 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 138
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 31, 0

Conread position: 1357-1521
Cow position: chr13:31609253-31609085 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 30, 121

Conread position: 1357-1522
Cow position: chr13:32735000-32734833 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 136
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 1357-1523
Cow position: chr13:21879617-21879449 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 1362-1502
Cow position: chr13:47368359-47368501 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 117

Conread position: 1362-1522
Cow position: chr13:679967-680129 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr13:17310611-17310771 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 121

Conread position: 1362-1522
Cow position: chr13:25381596-25381757 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 125
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 26, 75

Conread position: 1362-1522
Cow position: chr13:35539357-35539520 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr13:49613341-49613186 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 53

Conread position: 1362-1522
Cow position: chr13:50111661-50111823 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr13:51006832-51006670 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1524
Cow position: chr13:34763782-34763620 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 137
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 26, 132

Conread position: 1363-1523
Cow position: chr13:19056617-19056459 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 22, 82

Conread position: 1365-1492
Cow position: chr13:19394825-19394698 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 29, 48

Conread position: 1365-1522
Cow position: chr13:32983203-32983044 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 20, 125

Conread position: 1366-1522
Cow position: chr13:15447293-15447142 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 81

Conread position: 1367-1522
Cow position: chr13:33523759-33523602 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 1368-1523
Cow position: chr13:22275009-22275166 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 1371-1522
Cow position: chr13:3313828-3313980 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 21, 0

Conread position: 1376-1522
Cow position: chr13:6360076-6360220 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 12, 42

Conread position: 1376-1522
Cow position: chr13:34322752-34322604 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 1386-1522
Cow position: chr13:36935949-36936086 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 97, 0

Conread position: 1394-1522
Cow position: chr13:644748-644619 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 1405-1515
Cow position: chr13:9300407-9300518 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 77, 0

Show alignments to all cow chromosomes.