Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8024B18.5 |
| Conread position: | 1329-1523 |
| Cow position: | chr18:28083518-28083719 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1348-1522 |
| Cow position: | chr18:47711615-47711790 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 39, 166 |
| Conread position: | 1349-1522 |
| Cow position: | chr18:14128798-14128624 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 106 |
| Conread position: | 1349-1522 |
| Cow position: | chr18:23801511-23801686 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1349-1522 |
| Cow position: | chr18:35295664-35295842 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1349-1522 |
| Cow position: | chr18:51696783-51696957 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 39, 140 |
| Conread position: | 1353-1463 |
| Cow position: | chr18:54168389-54168278 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1493 |
| Cow position: | chr18:5077572-5077434 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 41, 50 |
| Conread position: | 1353-1497 |
| Cow position: | chr18:27538909-27539054 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 34, 27 |
| Conread position: | 1353-1501 |
| Cow position: | chr18:40483499-40483648 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 34, 111 |
| Conread position: | 1353-1510 |
| Cow position: | chr18:51273611-51273452 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1353-1515 |
| Cow position: | chr18:29239593-29239756 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1353-1515 |
| Cow position: | chr18:33101819-33101978 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 34, 119 |
| Conread position: | 1353-1518 |
| Cow position: | chr18:16360490-16360327 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 47 |
| Conread position: | 1353-1518 |
| Cow position: | chr18:36647667-36647832 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 35, 141 |
| Conread position: | 1353-1521 |
| Cow position: | chr18:5535487-5535651 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 34, 127 |
| Conread position: | 1353-1521 |
| Cow position: | chr18:14418469-14418639 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr18:33521706-33521876 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1521 |
| Cow position: | chr18:38160366-38160196 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:603964-603801 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 91 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:1956676-1956505 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:3755437-3755608 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:5202019-5202190 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:10221523-10221693 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 123 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:16081018-16081189 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:16092311-16092482 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 141 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:16174114-16173947 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 132 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:18216001-18216172 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:19354856-19355025 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 35, 104 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:21530018-21530189 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:22183036-22182865 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:23702590-23702419 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:24618923-24619090 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 35, 130 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:25353741-25353912 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:25922885-25923056 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:26244085-26243914 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:27835592-27835421 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:28969794-28969623 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:30762465-30762294 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:32165436-32165269 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 35, 130 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:37508461-37508628 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 107, 31 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:37700996-37700830 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 96 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:51344597-51344768 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:51662642-51662813 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:52630755-52630595 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:52655307-52655476 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 34, 84 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:54026293-54026464 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:54032203-54032374 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1353-1522 |
| Cow position: | chr18:55417217-55417388 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1353-1523 |
| Cow position: | chr18:16136158-16135985 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1353-1523 |
| Cow position: | chr18:17322899-17323067 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 127 |
| Conread position: | 1353-1523 |
| Cow position: | chr18:36775769-36775940 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 1354-1522 |
| Cow position: | chr18:29864112-29863942 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1357-1522 |
| Cow position: | chr18:51484094-51484261 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1357-1522 |
| Cow position: | chr18:56484179-56484014 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 64 |
| Conread position: | 1357-1523 |
| Cow position: | chr18:40343781-40343613 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1360-1518 |
| Cow position: | chr18:17095314-17095474 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1362-1515 |
| Cow position: | chr18:29222868-29223024 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 26, 97 |
| Conread position: | 1362-1520 |
| Cow position: | chr18:27168133-27168296 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr18:28929089-28928927 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 26, 112 |
| Conread position: | 1362-1522 |
| Cow position: | chr18:32437600-32437438 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr18:36511122-36511284 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1362-1522 |
| Cow position: | chr18:40158828-40158990 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1362-1523 |
| Cow position: | chr18:35291054-35291216 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 29, 122 |
| Conread position: | 1363-1522 |
| Cow position: | chr18:51460338-51460182 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 120 |
| Conread position: | 1364-1522 |
| Cow position: | chr18:16464357-16464203 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 1364-1522 |
| Cow position: | chr18:17671427-17671268 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 1364-1522 |
| Cow position: | chr18:56036171-56036327 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 105, 116 |
| Conread position: | 1369-1522 |
| Cow position: | chr18:29070936-29071091 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1369-1522 |
| Cow position: | chr18:34015269-34015424 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1382-1522 |
| Cow position: | chr18:47744273-47744414 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1392-1521 |
| Cow position: | chr18:35056619-35056746 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 1397-1518 |
| Cow position: | chr18:969229-969352 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 87, 0 |
Show alignments to all cow chromosomes.