Cow genome map

Conread name: Ss1.1-Pig4-TMW8024B18.5

Conread position: 1330-1522
Cow position: chr19:40017097-40016910 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 71

Conread position: 1336-1522
Cow position: chr19:20126504-20126693 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 20, 6

Conread position: 1343-1496
Cow position: chr19:30475055-30474903 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 11

Conread position: 1345-1520
Cow position: chr19:19388311-19388484 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 37, 138

Conread position: 1348-1515
Cow position: chr19:436842-436675 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 39, 83

Conread position: 1349-1512
Cow position: chr19:42297630-42297465 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 117
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 1349-1521
Cow position: chr19:9705691-9705518 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 35, 137

Conread position: 1349-1522
Cow position: chr19:3088825-3088652 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 131
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 135, 45

Conread position: 1349-1522
Cow position: chr19:7481442-7481267 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 1349-1522
Cow position: chr19:12775618-12775793 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 142
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 107

Conread position: 1350-1519
Cow position: chr19:36149158-36149328 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 134, 0

Conread position: 1353-1482
Cow position: chr19:21338344-21338214 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1506
Cow position: chr19:33649687-33649531 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 1353-1513
Cow position: chr19:39393010-39393172 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1518
Cow position: chr19:35382655-35382489 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 29, 38

Conread position: 1353-1521
Cow position: chr19:28579201-28579031 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr19:207003-207174 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr19:257812-257980 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 65

Conread position: 1353-1522
Cow position: chr19:474999-474828 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:748763-748599 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 129, 32

Conread position: 1353-1522
Cow position: chr19:5901070-5901238 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 88

Conread position: 1353-1522
Cow position: chr19:7490597-7490768 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr19:15445366-15445195 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:16318110-16317940 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 127

Conread position: 1353-1522
Cow position: chr19:20107240-20107411 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:20610831-20611002 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:22390959-22390788 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:22511277-22511110 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr19:33944068-33944235 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 132

Conread position: 1353-1522
Cow position: chr19:39183040-39182869 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr19:40834765-40834594 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 31, 26

Conread position: 1353-1522
Cow position: chr19:40849988-40849817 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr19:43147173-43147344 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr19:52149047-52148880 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 127
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr19:55165558-55165387 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1523
Cow position: chr19:33875914-33876086 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1523
Cow position: chr19:44758293-44758126 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 69

Conread position: 1353-1524
Cow position: chr19:336394-336227 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 34, 45

Conread position: 1353-1524
Cow position: chr19:375193-375019 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 130
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 137

Conread position: 1354-1501
Cow position: chr19:39749728-39749877 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 40, 0

Conread position: 1354-1521
Cow position: chr19:159357-159186 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 1354-1521
Cow position: chr19:28795828-28795661 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 33, 58

Conread position: 1354-1522
Cow position: chr19:174965-175135 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 1357-1518
Cow position: chr19:3402495-3402334 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 127, 11

Conread position: 1357-1519
Cow position: chr19:44396111-44395946 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 131
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 31, 0

Conread position: 1357-1522
Cow position: chr19:343906-344073 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 1357-1522
Cow position: chr19:890692-890528 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 7

Conread position: 1357-1522
Cow position: chr19:30517308-30517471 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 128

Conread position: 1357-1523
Cow position: chr19:2587706-2587873 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 125, 0

Conread position: 1362-1522
Cow position: chr19:5732016-5732172 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 109, 22

Conread position: 1362-1522
Cow position: chr19:7344541-7344701 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 131
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 26, 123

Conread position: 1362-1522
Cow position: chr19:12553728-12553565 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 1362-1523
Cow position: chr19:1586746-1586584 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 60

Conread position: 1362-1523
Cow position: chr19:38810927-38811082 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 127
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 25, 57

Conread position: 1363-1509
Cow position: chr19:3142141-3142290 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 1364-1496
Cow position: chr19:24727170-24727036 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 24, 0

Conread position: 1364-1518
Cow position: chr19:30560682-30560831 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 79

Conread position: 1365-1522
Cow position: chr19:1584978-1585137 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 124
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 1366-1522
Cow position: chr19:266452-266611 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 22, 0

Conread position: 1366-1523
Cow position: chr19:131851-131692 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 22, 0

Conread position: 1366-1523
Cow position: chr19:39666039-39665880 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 131
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 0

Conread position: 1366-1523
Cow position: chr19:40885235-40885075 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 1371-1522
Cow position: chr19:25378454-25378606 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 17, 65

Conread position: 1373-1522
Cow position: chr19:40852-41003 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 0

Conread position: 1376-1512
Cow position: chr19:28368930-28369064 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 12, 27

Conread position: 1386-1522
Cow position: chr19:55842319-55842452 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 96, 0

Conread position: 1390-1522
Cow position: chr19:6554515-6554646 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 109
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 91, 103

Conread position: 1405-1522
Cow position: chr19:2270747-2270629 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 81, 0

Show alignments to all cow chromosomes.