Cow genome map

Conread name: Ss1.1-Pig4-TMW8024B18.5

Conread position: 1257-1522
Cow position: chr21:47976485-47976751 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 226, 0

Conread position: 1349-1521
Cow position: chr21:469671-469841 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 39, 136

Conread position: 1349-1521
Cow position: chr21:13112824-13112650 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 142
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 1349-1522
Cow position: chr21:5019714-5019889 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 38, 0

Conread position: 1349-1523
Cow position: chr21:4186513-4186692 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 18, 0

Conread position: 1350-1519
Cow position: chr21:5594299-5594465 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 59

Conread position: 1353-1487
Cow position: chr21:37123783-37123651 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 35, 88

Conread position: 1353-1505
Cow position: chr21:47943525-47943678 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 30

Conread position: 1353-1506
Cow position: chr21:10519391-10519546 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1506
Cow position: chr21:28879142-28878988 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 125
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 55

Conread position: 1353-1512
Cow position: chr21:33984725-33984564 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 1353-1514
Cow position: chr21:24948678-24948842 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 134
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 41, 0

Conread position: 1353-1514
Cow position: chr21:35143334-35143171 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1514
Cow position: chr21:36375561-36375724 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1519
Cow position: chr21:49297398-49297566 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 121
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1520
Cow position: chr21:27620925-27620756 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr21:41790-41965 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 1353-1521
Cow position: chr21:1195115-1195280 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 50

Conread position: 1353-1521
Cow position: chr21:2513424-2513589 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1521
Cow position: chr21:3805500-3805663 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 40, 69

Conread position: 1353-1521
Cow position: chr21:10852838-10853007 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 132
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 34, 152

Conread position: 1353-1521
Cow position: chr21:15398403-15398233 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr21:27148983-27148811 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 132
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr21:33256127-33256297 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:148720-148891 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:2418778-2418944 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 83

Conread position: 1353-1522
Cow position: chr21:2538577-2538407 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 116

Conread position: 1353-1522
Cow position: chr21:2665566-2665396 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 34, 141

Conread position: 1353-1522
Cow position: chr21:6966894-6966729 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 131

Conread position: 1353-1522
Cow position: chr21:7063097-7062926 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr21:7154907-7155075 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 126, 0

Conread position: 1353-1522
Cow position: chr21:10569266-10569437 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:11291261-11291432 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr21:17143249-17143420 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 142
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:19352290-19352119 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:25189215-25189385 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 16

Conread position: 1353-1522
Cow position: chr21:26634585-26634415 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 35, 111

Conread position: 1353-1522
Cow position: chr21:26700092-26699921 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 140
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr21:27068388-27068217 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:30564328-30564494 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 104

Conread position: 1353-1522
Cow position: chr21:33317931-33317760 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:34656534-34656704 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 143
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 35, 77

Conread position: 1353-1522
Cow position: chr21:34902809-34902643 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr21:37373799-37373968 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 135
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 132

Conread position: 1353-1522
Cow position: chr21:39225483-39225317 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 83

Conread position: 1353-1522
Cow position: chr21:39427649-39427820 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr21:41797150-41796979 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr21:42916366-42916535 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 35, 91

Conread position: 1353-1522
Cow position: chr21:44763389-44763218 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr21:46975491-46975331 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 113, 0

Conread position: 1353-1522
Cow position: chr21:47647908-47648079 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1523
Cow position: chr21:4078620-4078792 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1523
Cow position: chr21:15548301-15548129 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1523
Cow position: chr21:24298951-24298783 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 44

Conread position: 1354-1506
Cow position: chr21:995857-995703 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 19, 143

Conread position: 1354-1518
Cow position: chr21:23803118-23802956 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 19

Conread position: 1354-1522
Cow position: chr21:4736864-4736699 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 33, 44

Conread position: 1354-1522
Cow position: chr21:37040043-37039873 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1355-1513
Cow position: chr21:20742092-20741932 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 1357-1496
Cow position: chr21:31513742-31513601 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 1357-1511
Cow position: chr21:28853268-28853115 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 95

Conread position: 1357-1522
Cow position: chr21:34256016-34255851 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 138

Conread position: 1357-1522
Cow position: chr21:48529845-48529678 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 30, 0

Conread position: 1358-1522
Cow position: chr21:30596511-30596345 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 29, 0

Conread position: 1360-1522
Cow position: chr21:5938041-5938205 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 28, 0

Conread position: 1362-1518
Cow position: chr21:35390555-35390407 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 25, 39

Conread position: 1362-1522
Cow position: chr21:2879246-2879084 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1362-1522
Cow position: chr21:4091915-4092077 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr21:4481878-4482040 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr21:27286026-27286188 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1362-1522
Cow position: chr21:28614898-28615061 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 130
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 25, 41

Conread position: 1362-1522
Cow position: chr21:32397469-32397307 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr21:40268802-40268640 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 130
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 25, 0

Conread position: 1364-1521
Cow position: chr21:13299430-13299582 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 24, 116

Conread position: 1364-1523
Cow position: chr21:22462778-22462939 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 1365-1522
Cow position: chr21:3781371-3781530 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 0

Conread position: 1368-1521
Cow position: chr21:4587398-4587244 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 74

Conread position: 1369-1520
Cow position: chr21:19613326-19613479 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 1376-1510
Cow position: chr21:24694742-24694873 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 1376-1522
Cow position: chr21:21171710-21171562 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 1386-1522
Cow position: chr21:5544043-5543906 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 1389-1522
Cow position: chr21:26455800-26455933 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 94, 111

Show alignments to all cow chromosomes.