Cow genome map

Conread name: Ss1.1-Pig4-TMW8024B18.5

Conread position: 1328-1522
Cow position: chr29:28698479-28698284 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 152
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 19, 69

Conread position: 1329-1523
Cow position: chr29:131906-132100 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 21, 34

Conread position: 1344-1522
Cow position: chr29:667008-666828 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 141
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 0

Conread position: 1348-1521
Cow position: chr29:43256002-43255828 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 139
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 134, 0

Conread position: 1349-1515
Cow position: chr29:13584622-13584788 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 134

Conread position: 1349-1519
Cow position: chr29:28711289-28711118 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 14, 9

Conread position: 1349-1522
Cow position: chr29:10249272-10249097 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 1349-1522
Cow position: chr29:14209144-14208969 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 142
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 38, 0

Conread position: 1349-1522
Cow position: chr29:15624293-15624119 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 39, 9

Conread position: 1349-1522
Cow position: chr29:27260717-27260542 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 39, 0

Conread position: 1349-1522
Cow position: chr29:45625753-45625926 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 39, 134

Conread position: 1349-1524
Cow position: chr29:648227-648401 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 136
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 39, 50

Conread position: 1350-1478
Cow position: chr29:1307609-1307740 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 38, 29

Conread position: 1350-1522
Cow position: chr29:2838931-2838757 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 143
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 0

Conread position: 1353-1482
Cow position: chr29:15797356-15797226 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1507
Cow position: chr29:10845364-10845521 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 36, 0

Conread position: 1353-1513
Cow position: chr29:25930108-25929946 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1518
Cow position: chr29:6219387-6219224 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 34, 72

Conread position: 1353-1518
Cow position: chr29:6873464-6873297 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 127
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 0

Conread position: 1353-1519
Cow position: chr29:34739428-34739260 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 133
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1519
Cow position: chr29:43518777-43518608 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr29:529990-529820 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 136
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1521
Cow position: chr29:2746045-2745875 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 139
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 36, 0

Conread position: 1353-1521
Cow position: chr29:4199806-4199972 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 127

Conread position: 1353-1521
Cow position: chr29:8624784-8624618 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 133
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 34, 132

Conread position: 1353-1521
Cow position: chr29:13019101-13019266 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 34, 63

Conread position: 1353-1521
Cow position: chr29:13850466-13850301 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 125, 75

Conread position: 1353-1521
Cow position: chr29:17137140-17137310 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1521
Cow position: chr29:19620858-19620690 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 141

Conread position: 1353-1521
Cow position: chr29:31764451-31764620 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 35, 135

Conread position: 1353-1522
Cow position: chr29:107469-107636 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 41, 0

Conread position: 1353-1522
Cow position: chr29:408850-408683 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 34, 132

Conread position: 1353-1522
Cow position: chr29:608220-608054 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 132

Conread position: 1353-1522
Cow position: chr29:2102254-2102425 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:2464462-2464291 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 34, 104

Conread position: 1353-1522
Cow position: chr29:2692858-2693025 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 132

Conread position: 1353-1522
Cow position: chr29:5390249-5390415 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 69

Conread position: 1353-1522
Cow position: chr29:5785221-5785392 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:6263592-6263421 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:6933900-6934071 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:7846803-7846970 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr29:9640366-9640196 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 143
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 35, 45

Conread position: 1353-1522
Cow position: chr29:10645003-10644832 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:10821508-10821337 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:13899074-13899245 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:15260581-15260410 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:15967145-15966974 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 0

Conread position: 1353-1522
Cow position: chr29:19525881-19525710 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:19656312-19656483 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:20253575-20253745 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 34, 107

Conread position: 1353-1522
Cow position: chr29:21226389-21226556 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr29:21430445-21430278 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 34, 130

Conread position: 1353-1522
Cow position: chr29:26162427-26162257 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 129, 0

Conread position: 1353-1522
Cow position: chr29:27977412-27977247 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 36, 91

Conread position: 1353-1522
Cow position: chr29:31095179-31095007 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:31183816-31183987 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:32514736-32514904 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 83

Conread position: 1353-1522
Cow position: chr29:32804927-32805094 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 131, 141

Conread position: 1353-1522
Cow position: chr29:35274611-35274440 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:35299328-35299499 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:39077306-39077137 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 34, 144

Conread position: 1353-1522
Cow position: chr29:39424730-39424559 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:40293744-40293911 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 35, 130

Conread position: 1353-1522
Cow position: chr29:40500580-40500409 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 34, 0

Conread position: 1353-1522
Cow position: chr29:40619409-40619238 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1522
Cow position: chr29:42256566-42256402 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 129
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 127

Conread position: 1353-1522
Cow position: chr29:45461642-45461812 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 129, 0

Conread position: 1353-1523
Cow position: chr29:2415668-2415496 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 141
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 1353-1523
Cow position: chr29:13057158-13057332 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 140
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 35, 105

Conread position: 1353-1523
Cow position: chr29:14453704-14453866 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 35, 55

Conread position: 1353-1524
Cow position: chr29:14500275-14500447 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 35, 69

Conread position: 1353-1524
Cow position: chr29:17407547-17407720 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 141
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 35, 0

Conread position: 1354-1522
Cow position: chr29:23979119-23979290 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 1354-1522
Cow position: chr29:34795450-34795279 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 128
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 33, 0

Conread position: 1354-1522
Cow position: chr29:45206921-45207091 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 131
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 33, 0

Conread position: 1357-1515
Cow position: chr29:32288796-32288956 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 31, 0

Conread position: 1357-1521
Cow position: chr29:46047-45882 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 30, 117

Conread position: 1357-1522
Cow position: chr29:7428699-7428532 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 132
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 0

Conread position: 1357-1522
Cow position: chr29:9080418-9080251 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 31, 43

Conread position: 1357-1522
Cow position: chr29:16171694-16171528 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 132, 37

Conread position: 1360-1524
Cow position: chr29:1217142-1217307 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 28, 7

Conread position: 1362-1512
Cow position: chr29:16689251-16689401 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 116, 107

Conread position: 1362-1520
Cow position: chr29:40470830-40470989 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 95

Conread position: 1362-1521
Cow position: chr29:16346623-16346784 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr29:13922924-13923086 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 20, 0

Conread position: 1362-1522
Cow position: chr29:19889994-19890152 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 118

Conread position: 1362-1522
Cow position: chr29:28657952-28657790 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr29:32557328-32557166 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 26, 0

Conread position: 1362-1522
Cow position: chr29:43965073-43964917 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 23, 99

Conread position: 1364-1501
Cow position: chr29:5980301-5980161 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 9, 0

Conread position: 1364-1519
Cow position: chr29:5239812-5239969 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 1365-1522
Cow position: chr29:1477872-1478031 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 129
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 1386-1498
Cow position: chr29:8665964-8666077 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 1389-1523
Cow position: chr29:21254424-21254559 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 87, 0

Show alignments to all cow chromosomes.