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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8024N04.3
        

               
Conread position:
               
98-343
               

               
Cow position:
               
chr1:66369108-66368863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
167, 32
               

               
Conread position:
               
99-331
               

               
Cow position:
               
chr1:29656477-29656707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
167, 6
               

               
Conread position:
               
99-353
               

               
Cow position:
               
chr1:99572275-99572030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
167, 5
               

               
Conread position:
               
99-389
               

               
Cow position:
               
chr1:20798111-20798393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
68, 5
               

               
Conread position:
               
112-329
               

               
Cow position:
               
chr1:70037941-70037730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr1:17009432-17009203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-343
               

               
Cow position:
               
chr1:48345470-48345700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-375
               

               
Cow position:
               
chr1:25178725-25178447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-377
               

               
Cow position:
               
chr1:46694607-46694343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
113-251
               

               
Cow position:
               
chr1:31707783-31707919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-274
               

               
Cow position:
               
chr1:16372574-16372734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-281
               

               
Cow position:
               
chr1:47119258-47119425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-300
               

               
Cow position:
               
chr1:38418119-38418308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
113-306
               

               
Cow position:
               
chr1:48250016-48250210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
113-307
               

               
Cow position:
               
chr1:22909170-22909359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
153, 20
               

               
Conread position:
               
113-317
               

               
Cow position:
               
chr1:21165070-21165273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-328
               

               
Cow position:
               
chr1:51967550-51967762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-334
               

               
Cow position:
               
chr1:93112046-93111829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
18, 33
               

               
Conread position:
               
113-337
               

               
Cow position:
               
chr1:23098938-23099157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
113-337
               

               
Cow position:
               
chr1:56475301-56475520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr1:20543528-20543753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr1:33392319-33392542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr1:14529158-14528943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr1:56631681-56631903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr1:71135203-71135424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
119, 15
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr1:95766079-95765852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
19, 31
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr1:30281523-30281297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:7324372-7324600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:22253375-22253602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:28811941-28811713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:40681430-40681202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:59202926-59202697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-342
               

               
Cow position:
               
chr1:78921712-78921484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:2764417-2764652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 31
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:2989784-2990013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:7712081-7712304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:10725925-10726153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:11666240-11666011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:15149342-15149113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
152, 27
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:17187939-17187710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:18087730-18087959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:18698731-18698960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:21534961-21534731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
89, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:26536885-26536656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:26588251-26588480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:28520952-28521181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:34533542-34533771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:49268185-49268410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:52510815-52510588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
153, 8
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:56666401-56666630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:60251125-60250896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:61096801-61097030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:68145670-68145441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:69504073-69503844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:69770120-69770348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:72590063-72589834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:73440267-73440496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:74513842-74513613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:76878333-76878561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:77924782-77925011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:80564776-80564547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:86496590-86496819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:88563613-88563394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
20, 31
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:89793254-89793483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:92920935-92920706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:93850602-93850831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:95456653-95456881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:98354094-98353865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:99118785-99119014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr1:99675035-99674806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:7405972-7406202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:19056174-19056399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
149, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:20846712-20846482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:23861408-23861178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:28714340-28714570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:40058406-40058624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:40509955-40509727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:54472113-54471883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:56205509-56205283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:57506092-57506322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:61340019-61339789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:62927770-62928000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:63046186-63046416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:66145001-66145231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:71690857-71691084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
12, 29
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:72766736-72766507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:75403195-75403425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:77748044-77748274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:78587157-78586927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:85630637-85630867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:85795248-85795473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:89090236-89090006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
137, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:91673533-91673762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr1:102814774-102815004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-346
               

               
Cow position:
               
chr1:28677357-28677584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chr1:99117316-99117549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-356
               

               
Cow position:
               
chr1:53519963-53520203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
153, 20
               

               
Conread position:
               
113-370
               

               
Cow position:
               
chr1:71794834-71795087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:11289088-11288829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:19236196-19235939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:19828678-19828426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:20527461-20527717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:26722361-26722106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:31535153-31535410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:32961202-32960941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:33854568-33854824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:47078879-47078623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:63341171-63340914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:73565177-73564920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:73967813-73968070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:81308662-81308919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr1:82479284-82479541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-375
               

               
Cow position:
               
chr1:83169743-83170000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-376
               

               
Cow position:
               
chr1:55145346-55145605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr1:19775790-19775532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr1:42554306-42554565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr1:52054121-52054388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-389
               

               
Cow position:
               
chr1:38545415-38545148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
141, 20
               

               
Conread position:
               
113-389
               

               
Cow position:
               
chr1:39235202-39234921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr1:3339967-3340244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
153, 244
               

               
Conread position:
               
113-940
               

               
Cow position:
               
chr1:73010285-73011110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
829
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
114-239
               

               
Cow position:
               
chr1:81357354-81357231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
114-336
               

               
Cow position:
               
chr1:30065680-30065897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
114-337
               

               
Cow position:
               
chr1:24655132-24655353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
152, 19
               

               
Conread position:
               
114-338
               

               
Cow position:
               
chr1:77656846-77657069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 29
               

               
Conread position:
               
114-343
               

               
Cow position:
               
chr1:85773505-85773736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
27, 73
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr1:11018754-11018978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr1:34858378-34858162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
152, 23
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr1:56746183-56746415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
114-353
               

               
Cow position:
               
chr1:70388028-70387786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
114-353
               

               
Cow position:
               
chr1:72139494-72139736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
114-374
               

               
Cow position:
               
chr1:46612995-46612739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
151, 16
               

               
Conread position:
               
115-270
               

               
Cow position:
               
chr1:12872152-12871998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
115-323
               

               
Cow position:
               
chr1:29915477-29915679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 29
               

               
Conread position:
               
115-337
               

               
Cow position:
               
chr1:85142921-85142691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
17, 21
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr1:18282279-18282497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 30
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr1:20378293-20378068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 0
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr1:22789704-22789930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
71, 132
               

               
Conread position:
               
115-342
               

               
Cow position:
               
chr1:43568207-43567979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 30
               

               
Conread position:
               
115-343
               

               
Cow position:
               
chr1:79255292-79255514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
151, 28
               

               
Conread position:
               
115-343
               

               
Cow position:
               
chr1:84893865-84894093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
150, 15
               

               
Conread position:
               
115-344
               

               
Cow position:
               
chr1:19145866-19145630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-344
               

               
Cow position:
               
chr1:21353014-21352787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
145, 17
               

               
Conread position:
               
115-344
               

               
Cow position:
               
chr1:44079116-44078890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-344
               

               
Cow position:
               
chr1:46820917-46821144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
115-345
               

               
Cow position:
               
chr1:10005685-10005457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
73, 30
               

               
Conread position:
               
115-349
               

               
Cow position:
               
chr1:68950710-68950940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
115-354
               

               
Cow position:
               
chr1:82369721-82369957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
115-354
               

               
Cow position:
               
chr1:98789157-98789396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
115-360
               

               
Cow position:
               
chr1:39480183-39479944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
115-360
               

               
Cow position:
               
chr1:54477096-54477330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-363
               

               
Cow position:
               
chr1:68812615-68812376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
16, 30
               

               
Conread position:
               
115-372
               

               
Cow position:
               
chr1:29461631-29461881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
145, 24
               

               
Conread position:
               
115-372
               

               
Cow position:
               
chr1:71044810-71045059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-374
               

               
Cow position:
               
chr1:70535160-70534903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
17, 30
               

               
Conread position:
               
116-320
               

               
Cow position:
               
chr1:63239996-63240200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
116-328
               

               
Cow position:
               
chr1:33987521-33987308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
9, 30
               

               
Conread position:
               
116-342
               

               
Cow position:
               
chr1:22481356-22481129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
116-344
               

               
Cow position:
               
chr1:38279435-38279207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
9, 24
               

               
Conread position:
               
116-349
               

               
Cow position:
               
chr1:82879738-82879966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 17
               

               
Conread position:
               
116-353
               

               
Cow position:
               
chr1:18024516-18024280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
123, 20
               

               
Conread position:
               
116-374
               

               
Cow position:
               
chr1:53309355-53309106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
16, 22
               

               
Conread position:
               
116-377
               

               
Cow position:
               
chr1:61282726-61282987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
110, 16
               

               
Conread position:
               
116-383
               

               
Cow position:
               
chr1:68281853-68282118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 20
               

               
Conread position:
               
117-384
               

               
Cow position:
               
chr1:53424233-53424488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
119-319
               

               
Cow position:
               
chr1:79590155-79590357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
119-344
               

               
Cow position:
               
chr1:6165286-6165506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
119-353
               

               
Cow position:
               
chr1:51444550-51444784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
12, 22
               

               
Conread position:
               
119-374
               

               
Cow position:
               
chr1:82909527-82909275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
146, 83
               

               
Conread position:
               
119-376
               

               
Cow position:
               
chr1:7739021-7739271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
119-377
               

               
Cow position:
               
chr1:25088365-25088111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
119-377
               

               
Cow position:
               
chr1:102783844-102784095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
227, 16
               

               
Conread position:
               
121-339
               

               
Cow position:
               
chr1:85338180-85338387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
121-342
               

               
Cow position:
               
chr1:9438982-9438763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
10, 21
               

               
Conread position:
               
121-344
               

               
Cow position:
               
chr1:13579468-13579247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
121-344
               

               
Cow position:
               
chr1:98559224-98559444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
145, 7
               

               
Conread position:
               
121-349
               

               
Cow position:
               
chr1:24781171-24780944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
121-377
               

               
Cow position:
               
chr1:70864561-70864811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
145, 14
               

               
Conread position:
               
121-377
               

               
Cow position:
               
chr1:73762236-73761978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
11, 23
               

               
Conread position:
               
122-262
               

               
Cow position:
               
chr1:30440466-30440602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
122-297
               

               
Cow position:
               
chr1:49132865-49132689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
19, 10
               

               
Conread position:
               
122-308
               

               
Cow position:
               
chr1:53311539-53311725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
103, 8
               

               
Conread position:
               
122-337
               

               
Cow position:
               
chr1:4276968-4277177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
144, 11
               

               
Conread position:
               
122-337
               

               
Cow position:
               
chr1:16573609-16573402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 22
               

               
Conread position:
               
122-337
               

               
Cow position:
               
chr1:90622914-90622710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
9, 18
               

               
Conread position:
               
122-342
               

               
Cow position:
               
chr1:22012653-22012434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
143, 126
               

               
Conread position:
               
122-372
               

               
Cow position:
               
chr1:85777151-85776899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
153, 101
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr1:32563227-32562971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
143, 225
               

               
Conread position:
               
123-316
               

               
Cow position:
               
chr1:42888172-42887991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-323
               

               
Cow position:
               
chr1:44127530-44127332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-328
               

               
Cow position:
               
chr1:61662225-61662023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
143, 22
               

               
Conread position:
               
123-338
               

               
Cow position:
               
chr1:68818598-68818386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr1:37541994-37541779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
139, 20
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr1:58439988-58439764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
123-347
               

               
Cow position:
               
chr1:100536459-100536684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-349
               

               
Cow position:
               
chr1:57671495-57671271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
75, 21
               

               
Conread position:
               
123-353
               

               
Cow position:
               
chr1:13718526-13718297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
123-361
               

               
Cow position:
               
chr1:42875345-42875114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
123-377
               

               
Cow position:
               
chr1:53397015-53397243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-377
               

               
Cow position:
               
chr1:53649963-53650217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-377
               

               
Cow position:
               
chr1:92196288-92196541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
123-389
               

               
Cow position:
               
chr1:19483932-19483667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
124-344
               

               
Cow position:
               
chr1:64717579-64717361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
67, 20
               

               
Conread position:
               
124-377
               

               
Cow position:
               
chr1:55327924-55327677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
125-343
               

               
Cow position:
               
chr1:16819923-16820136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
140, 75
               

               
Conread position:
               
125-372
               

               
Cow position:
               
chr1:65389868-65390120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
125-374
               

               
Cow position:
               
chr1:82567727-82567970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
140, 45
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr1:30079252-30079509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr1:61342395-61342142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
140, 236
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr1:98797846-98797601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
140, 64
               

               
Conread position:
               
125-457
               

               
Cow position:
               
chr1:24440750-24440413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
140, 105
               

               
Conread position:
               
126-344
               

               
Cow position:
               
chr1:52434337-52434553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
15, 148
               

               
Conread position:
               
127-286
               

               
Cow position:
               
chr1:8556999-8557158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr1:10364879-10365096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr1:66971846-66971631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
138, 98
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr1:67006191-67006408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
127-377
               

               
Cow position:
               
chr1:25553117-25553371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
138, 128
               

               
Conread position:
               
127-377
               

               
Cow position:
               
chr1:72086912-72087167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
127-389
               

               
Cow position:
               
chr1:21576854-21577121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
128-377
               

               
Cow position:
               
chr1:17938440-17938185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
137, 0
               

               
Conread position:
               
129-374
               

               
Cow position:
               
chr1:73463279-73463523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
136, 218
               

               
Conread position:
               
131-343
               

               
Cow position:
               
chr1:61331646-61331433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
131-345
               

               
Cow position:
               
chr1:89492913-89492705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
137, 66
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr1:8602659-8602408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr1:52755215-52754966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
137, 44
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr1:72986775-72987023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
109, 118
               

               
Conread position:
               
132-344
               

               
Cow position:
               
chr1:31352310-31352102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
9, 71
               

               
Conread position:
               
132-344
               

               
Cow position:
               
chr1:89767213-89767000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
132-356
               

               
Cow position:
               
chr1:100451357-100451130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
8, 163
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr1:82091215-82091425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
136-349
               

               
Cow position:
               
chr1:24202825-24202612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
55, 168
               

               
Conread position:
               
136-353
               

               
Cow position:
               
chr1:70381090-70380872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 63
               

               
Conread position:
               
136-377
               

               
Cow position:
               
chr1:3931018-3930772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
136-377
               

               
Cow position:
               
chr1:100591451-100591205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
137-342
               

               
Cow position:
               
chr1:15463175-15463380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
137-343
               

               
Cow position:
               
chr1:79633230-79633025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
21, 99
               

               
Conread position:
               
137-377
               

               
Cow position:
               
chr1:55159061-55158814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
138-374
               

               
Cow position:
               
chr1:79553817-79554053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
114, 210
               

               
Conread position:
               
138-377
               

               
Cow position:
               
chr1:58192485-58192238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
139-266
               

               
Cow position:
               
chr1:64594985-64594858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-270
               

               
Cow position:
               
chr1:40964821-40964689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
139-299
               

               
Cow position:
               
chr1:81302441-81302600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
139-317
               

               
Cow position:
               
chr1:21090790-21090969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-338
               

               
Cow position:
               
chr1:43449186-43448985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
46, 185
               

               
Conread position:
               
139-341
               

               
Cow position:
               
chr1:71559425-71559222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:9377046-9376849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
126, 68
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:17033270-17033065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:20146740-20146942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 88
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:33899867-33900069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
55, 101
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:68610450-68610248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 97
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:69671296-69671091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:90913154-90913359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr1:91902344-91902549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:3263314-3263520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:6196953-6196749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 77
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:8828346-8828551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
129, 139
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:16838642-16838847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 164
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:19884576-19884369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:21258277-21258071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:26838280-26838478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
127, 163
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:30531698-30531493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 50
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:31646299-31646097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 152
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:54933253-54933458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 194
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:56191093-56190888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 16
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:57571157-57571363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:57759238-57759440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
129, 134
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:58418996-58419201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
127, 169
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:67831811-67831605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:73064013-73063807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:84447007-84447213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:86544813-86544608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
126, 134
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:94662978-94663184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr1:99916764-99916970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-345
               

               
Cow position:
               
chr1:57679053-57678847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
139-353
               

               
Cow position:
               
chr1:4515399-4515188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
139-353
               

               
Cow position:
               
chr1:55273717-55273502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-356
               

               
Cow position:
               
chr1:99582134-99581911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
139-371
               

               
Cow position:
               
chr1:4646209-4645981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
127, 134
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:19441215-19440981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
105, 111
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:24922183-24921951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
200, 24
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr1:52379618-52379856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr1:9261821-9262054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
127, 209
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr1:35598486-35598253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 211
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:5505263-5505506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:13251220-13250977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:14240742-14240499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
119, 108
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:16117074-16116832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:23117883-23117640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:25053262-25053019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:26811749-26811507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:28876422-28876665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:36646126-36645888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 87
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:52355347-52355105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:52371297-52371540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:57363008-57362765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:63602463-63602220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:67078502-67078259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:69406483-69406726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:72114466-72114704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:76618149-76617907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:76749067-76748829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:79334662-79334419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:79453435-79453192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:97076176-97075933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:99838026-99837783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr1:100888183-100887940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr1:86705463-86705706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 61
               

               
Conread position:
               
139-457
               

               
Cow position:
               
chr1:57246421-57246745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
105, 138
               

               
Conread position:
               
140-246
               

               
Cow position:
               
chr1:29947917-29947813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
140-297
               

               
Cow position:
               
chr1:29410884-29410725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr1:54163760-54163587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
61, 44
               

               
Conread position:
               
140-313
               

               
Cow position:
               
chr1:99106091-99105918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
126, 86
               

               
Conread position:
               
140-332
               

               
Cow position:
               
chr1:31414901-31414710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr1:4452759-4452558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
24, 36
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr1:26446480-26446680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr1:42056922-42057118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
140-339
               

               
Cow position:
               
chr1:5163013-5162813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
140-339
               

               
Cow position:
               
chr1:12468467-12468267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
61, 23
               

               
Conread position:
               
140-339
               

               
Cow position:
               
chr1:41517532-41517339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
140-339
               

               
Cow position:
               
chr1:72864272-72864471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
140-342
               

               
Cow position:
               
chr1:68846384-68846189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 37
               

               
Conread position:
               
140-342
               

               
Cow position:
               
chr1:92279485-92279288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr1:6765771-6765573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
126, 49
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr1:11874316-11874120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
126, 105
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr1:67289945-67290147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 103
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr1:100420924-100421129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 101
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr1:3440289-3440493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr1:47454654-47454449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr1:58528597-58528802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 60
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr1:59483537-59483332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr1:68854281-68854482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
126, 90
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr1:24580732-24580955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
140-366
               

               
Cow position:
               
chr1:71939401-71939170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
53, 44
               

               
Conread position:
               
140-377
               

               
Cow position:
               
chr1:12057924-12057684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
20, 134
               

               
Conread position:
               
140-377
               

               
Cow position:
               
chr1:42740022-42740264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
140-377
               

               
Cow position:
               
chr1:102431413-102431175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
125, 202
               

               
Conread position:
               
140-389
               

               
Cow position:
               
chr1:60279862-60280098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
128, 30
               

               
Conread position:
               
141-288
               

               
Cow position:
               
chr1:45021553-45021701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
141-327
               

               
Cow position:
               
chr1:53487804-53487988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
47, 43
               

               
Conread position:
               
141-328
               

               
Cow position:
               
chr1:89263286-89263097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
60, 43
               

               
Conread position:
               
141-339
               

               
Cow position:
               
chr1:38400949-38401146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr1:61220757-61220962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
99, 45
               

               
Conread position:
               
141-349
               

               
Cow position:
               
chr1:61748124-61747915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
125, 78
               

               
Conread position:
               
141-377
               

               
Cow position:
               
chr1:21114096-21113856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
141-378
               

               
Cow position:
               
chr1:31391967-31391732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
191, 22
               

               
Conread position:
               
142-335
               

               
Cow position:
               
chr1:30234071-30234259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
124, 42
               

               
Conread position:
               
142-343
               

               
Cow position:
               
chr1:19049937-19049736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
66, 42
               

               
Conread position:
               
142-344
               

               
Cow position:
               
chr1:31814343-31814545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
142-372
               

               
Cow position:
               
chr1:99278659-99278428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 206
               

               
Conread position:
               
142-377
               

               
Cow position:
               
chr1:56644563-56644322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
143-343
               

               
Cow position:
               
chr1:19793031-19793232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
33, 102
               

               
Conread position:
               
144-306
               

               
Cow position:
               
chr1:40061553-40061714 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
124, 20
               

               
Conread position:
               
144-341
               

               
Cow position:
               
chr1:22288331-22288528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
122, 27
               

               
Conread position:
               
145-328
               

               
Cow position:
               
chr1:58218428-58218609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
122, 40
               

               
Conread position:
               
145-342
               

               
Cow position:
               
chr1:25119946-25119753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
43, 39
               

               
Conread position:
               
145-343
               

               
Cow position:
               
chr1:57970268-57970082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
95, 25
               

               
Conread position:
               
145-344
               

               
Cow position:
               
chr1:53371699-53371901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
81, 20
               

               
Conread position:
               
145-349
               

               
Cow position:
               
chr1:20098432-20098627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
120, 95
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr1:88266796-88266564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
91, 133
               

               
Conread position:
               
145-377
               

               
Cow position:
               
chr1:20001668-20001440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
124, 25
               

               
Conread position:
               
145-384
               

               
Cow position:
               
chr1:15368306-15368069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 43
               

               
Conread position:
               
146-337
               

               
Cow position:
               
chr1:20867276-20867085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
122, 104
               

               
Conread position:
               
146-346
               

               
Cow position:
               
chr1:73870186-73870387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
147-339
               

               
Cow position:
               
chr1:6240942-6240755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
121, 55
               

               
Conread position:
               
147-343
               

               
Cow position:
               
chr1:62507910-62507715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
18, 120
               

               
Conread position:
               
148-361
               

               
Cow position:
               
chr1:43024741-43024953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
149-339
               

               
Cow position:
               
chr1:90391543-90391354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 21
               

               
Conread position:
               
149-372
               

               
Cow position:
               
chr1:57635947-57636175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
150-300
               

               
Cow position:
               
chr1:51982783-51982935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
150-318
               

               
Cow position:
               
chr1:31515778-31515609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
150-335
               

               
Cow position:
               
chr1:76851938-76851752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
104, 100
               

               
Conread position:
               
150-343
               

               
Cow position:
               
chr1:68252665-68252855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 95
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr1:11199294-11199100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr1:88328151-88327954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
150-355
               

               
Cow position:
               
chr1:101008522-101008317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
51, 140
               

               
Conread position:
               
150-376
               

               
Cow position:
               
chr1:67913413-67913642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
150-389
               

               
Cow position:
               
chr1:82163458-82163228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
105, 14
               

               
Conread position:
               
150-390
               

               
Cow position:
               
chr1:56619613-56619359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
151-336
               

               
Cow position:
               
chr1:57743900-57743717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
37, 33
               

               
Conread position:
               
151-342
               

               
Cow position:
               
chr1:76304301-76304111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
151-353
               

               
Cow position:
               
chr1:39112046-39112249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
40, 33
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr1:22727638-22727865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
152-337
               

               
Cow position:
               
chr1:54116583-54116767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
152-339
               

               
Cow position:
               
chr1:31317138-31316949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
19, 129
               

               
Conread position:
               
152-354
               

               
Cow position:
               
chr1:40532540-40532343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
32, 18
               

               
Conread position:
               
152-383
               

               
Cow position:
               
chr1:61746841-61746616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
153-344
               

               
Cow position:
               
chr1:57659939-57660131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
154-343
               

               
Cow position:
               
chr1:4208159-4207969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr1:61727745-61727552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
155-264
               

               
Cow position:
               
chr1:63517497-63517388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-307
               

               
Cow position:
               
chr1:86592963-86592809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
155-322
               

               
Cow position:
               
chr1:22529470-22529302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-327
               

               
Cow position:
               
chr1:23658729-23658556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-331
               

               
Cow position:
               
chr1:101524059-101523885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
86, 122
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr1:16973771-16973592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr1:57946271-57946454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-338
               

               
Cow position:
               
chr1:5013456-5013273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
111, 89
               

               
Conread position:
               
155-342
               

               
Cow position:
               
chr1:87830591-87830777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
111, 29
               

               
Conread position:
               
155-342
               

               
Cow position:
               
chr1:89234691-89234503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:3932299-3932110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:8470821-8470632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:8517729-8517540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:12374963-12374774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:19158116-19157927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:34392520-34392330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:46930613-46930424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:48810853-48810664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:52380785-52380974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:78290898-78291087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:83060300-83060112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
110, 46
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:84448966-84449155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:95474561-95474372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr1:96193810-96193628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 34
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:7162467-7162277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:17248322-17248132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:20849190-20849000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:21133790-21133601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
110, 71
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:32795542-32795732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:33716301-33716491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 174
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:61203725-61203915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:71792271-71792460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
111, 23
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:88179200-88179390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:88676807-88677000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 98
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:89431744-89431934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:94464454-94464641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
110, 45
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr1:102552344-102552534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
86, 97
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr1:7415826-7416017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-367
               

               
Cow position:
               
chr1:40088716-40088933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
78, 95
               

               
Conread position:
               
155-371
               

               
Cow position:
               
chr1:9595605-9595384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr1:7746274-7746488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr1:20832223-20832440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
110, 195
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr1:68602289-68602065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-375
               

               
Cow position:
               
chr1:73018128-73017904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 15
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:18195936-18196163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
86, 94
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:21507747-21507524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:29428940-29429172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:30494905-30495121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 79
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:33548060-33547833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:38712053-38712280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:52508279-52508055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
113, 15
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:53578397-53578623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
110, 162
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:55043921-55043696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:55780212-55780436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
110, 68
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:63048920-63049146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
110, 9
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:66490922-66491145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:82920798-82920573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
110, 21
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:89112163-89112383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:93857863-93858090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:101974067-101973840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
73, 95
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr1:102321776-102321551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
32, 16
               

               
Conread position:
               
155-388
               

               
Cow position:
               
chr1:7837420-7837189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
109, 135
               

               
Conread position:
               
155-398
               

               
Cow position:
               
chr1:4337107-4337349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
110, 118
               

               
Conread position:
               
156-306
               

               
Cow position:
               
chr1:37420974-37420825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr1:30034959-30035138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
110, 28
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr1:30786186-30786002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
156-337
               

               
Cow position:
               
chr1:73431029-73430847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
35, 126
               

               
Conread position:
               
156-338
               

               
Cow position:
               
chr1:50764488-50764672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
156-338
               

               
Cow position:
               
chr1:86506011-86505829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
110, 55
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr1:28176092-28176279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
156-344
               

               
Cow position:
               
chr1:3382977-3382788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
156-344
               

               
Cow position:
               
chr1:57574245-57574056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
156-364
               

               
Cow position:
               
chr1:11854608-11854403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 155
               

               
Conread position:
               
156-376
               

               
Cow position:
               
chr1:30033614-30033831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
110, 33
               

               
Conread position:
               
156-377
               

               
Cow position:
               
chr1:71081502-71081280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 205
               

               
Conread position:
               
156-377
               

               
Cow position:
               
chr1:86599670-86599443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
156-389
               

               
Cow position:
               
chr1:37323938-37323713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
156-390
               

               
Cow position:
               
chr1:56439089-56438853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
45, 28
               

               
Conread position:
               
157-318
               

               
Cow position:
               
chr1:13638557-13638396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
109, 130
               

               
Conread position:
               
157-349
               

               
Cow position:
               
chr1:16797759-16797567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
157-377
               

               
Cow position:
               
chr1:58340257-58340482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
158-344
               

               
Cow position:
               
chr1:81320983-81320796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
107, 133
               

               
Conread position:
               
158-364
               

               
Cow position:
               
chr1:73434160-73433953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr1:39250093-39249909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
32, 21
               

               
Conread position:
               
159-343
               

               
Cow position:
               
chr1:21678136-21678321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
159-344
               

               
Cow position:
               
chr1:89484438-89484622 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
107, 48
               

               
Conread position:
               
159-371
               

               
Cow position:
               
chr1:68368030-68368244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
107, 42
               

               
Conread position:
               
160-318
               

               
Cow position:
               
chr1:73443513-73443355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 41
               

               
Conread position:
               
160-337
               

               
Cow position:
               
chr1:99628730-99628561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 11
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr1:41736528-41736345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
107, 10
               

               
Conread position:
               
160-372
               

               
Cow position:
               
chr1:58197108-58196895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 173
               

               
Conread position:
               
161-344
               

               
Cow position:
               
chr1:70069064-70068880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
104, 0
               

               
Conread position:
               
161-508
               

               
Cow position:
               
chr1:71667133-71666761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
65, 317
               

               
Conread position:
               
162-343
               

               
Cow position:
               
chr1:8845004-8845186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
162-372
               

               
Cow position:
               
chr1:15049157-15049365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 38
               

               
Conread position:
               
164-339
               

               
Cow position:
               
chr1:69287063-69286886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
164-374
               

               
Cow position:
               
chr1:7196704-7196912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
101, 182
               

               
Conread position:
               
165-307
               

               
Cow position:
               
chr1:44137473-44137330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
90, 110
               

               
Conread position:
               
165-343
               

               
Cow position:
               
chr1:21080089-21079910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
165-343
               

               
Cow position:
               
chr1:45006310-45006487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
101, 145
               

               
Conread position:
               
165-353
               

               
Cow position:
               
chr1:31342057-31341866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
165-364
               

               
Cow position:
               
chr1:24571790-24571596 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
181, 42
               

               
Conread position:
               
165-377
               

               
Cow position:
               
chr1:51980330-51980539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
101, 58
               

               
Conread position:
               
165-390
               

               
Cow position:
               
chr1:24562403-24562183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
101, 42
               

               
Conread position:
               
167-344
               

               
Cow position:
               
chr1:78796720-78796544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
99, 143
               

               
Conread position:
               
167-377
               

               
Cow position:
               
chr1:30372246-30372462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
170-344
               

               
Cow position:
               
chr1:15743176-15743351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
170-377
               

               
Cow position:
               
chr1:32361040-32360836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
171-342
               

               
Cow position:
               
chr1:66242704-66242532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
48, 59
               

               
Conread position:
               
171-343
               

               
Cow position:
               
chr1:72807936-72808109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
171-363
               

               
Cow position:
               
chr1:42054218-42054023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
97, 77
               

               
Conread position:
               
171-364
               

               
Cow position:
               
chr1:33442837-33442645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
97, 13
               

               
Conread position:
               
171-389
               

               
Cow position:
               
chr1:29901870-29901665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
99, 61
               

               
Conread position:
               
171-389
               

               
Cow position:
               
chr1:31238832-31238615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
95, 171
               
UCSC Genome Browser

               
Conread position:
               
173-374
               

               
Cow position:
               
chr1:76700385-76700187 (view  custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
97, 62
               
UCSC Genome Browser

               
               
               
Conread position:
175-340

               
               
               
Cow position:
chr1:88028183-88028348 (view  custom track)

               
               
               
Alignm length:
166

               
               
               
Alignm identity:
125

               
               
               
Alignm E-value:
3e-30

               
               
               
Alignm gaps (pig, cow):
0, 0
UCSC Genome Browser

               
               
               
Conread position:
175-344

               
               
               
Cow position:
chr1:17436040-17435871 (view  custom track)

               
               
               
Alignm length:
170

               
               
               
Alignm identity:
127

               
               
               
Alignm E-value:
3e-30

               
               
               
Alignm gaps (pig, cow):
0, 0

               
               
               Conread position:180-344
               
               
               Cow position:chr1:21421294-21421127 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:180-377
               
               
               Cow position:chr1:38478977-38479179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:180-377
               
               
               Cow position:chr1:80902111-80901910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:181-372
               
               
               Cow position:chr1:74302745-74302554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 151

               
               
               Conread position:184-344
               
               
               Cow position:chr1:39889448-39889610 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:184-374
               
               
               Cow position:chr1:67189059-67188864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:193-381
               
               
               Cow position:chr1:95018689-95018496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:194-343
               
               
               Cow position:chr1:35785155-35785305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:194-343
               
               
               Cow position:chr1:71124259-71124109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:194-346
               
               
               Cow position:chr1:68783534-68783382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 104

               
               
               Conread position:194-389
               
               
               Cow position:chr1:4375414-4375217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):74, 51

               
               
               Conread position:195-342
               
               
               Cow position:chr1:101801525-101801673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:196-340
               
               
               Cow position:chr1:92881471-92881325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:196-377
               
               
               Cow position:chr1:88337825-88338010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:197-343
               
               
               Cow position:chr1:44837135-44836988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:197-344
               
               
               Cow position:chr1:81362663-81362808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:206-388
               
               
               Cow position:chr1:90605461-90605283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:127
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:207-343
               
               
               Cow position:chr1:27494634-27494770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):59, 28

               
               
               Conread position:215-344
               
               
               Cow position:chr1:85163916-85163784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:217-338
               
               
               Cow position:chr1:44229618-44229740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:221-336
               
               
               Cow position:chr1:86574234-86574350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:355-502
               
               
               Cow position:chr1:66242665-66242519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 26

               
               
               Conread position:402-938
               
               
               Cow position:chr1:46839221-46839775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:567
               
               
               Alignm identity:367
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):170, 75

               
               
               Conread position:441-648
               
               
               Cow position:chr1:55682324-55682123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):16, 29

               
               
               Conread position:476-938
               
               
               Cow position:chr1:68827214-68826738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:485
               
               
               Alignm identity:292
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):96, 83

               
               
               Conread position:477-888
               
               
               Cow position:chr1:99609058-99609486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):51, 42

               
               
               Conread position:480-811
               
               
               Cow position:chr1:29901259-29900944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):90, 36

               
               
               Conread position:487-943
               
               
               Cow position:chr1:92963100-92963568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:316
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):50, 32

               
               
               Conread position:488-891
               
               
               Cow position:chr1:72141265-72141693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:299
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):34, 146

               
               
               Conread position:494-789
               
               
               Cow position:chr1:11873644-11873348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):23, 32

               
               
               Conread position:494-845
               
               
               Cow position:chr1:52753455-52753090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:247
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):78, 23

               
               
               Conread position:496-892
               
               
               Cow position:chr1:22730476-22730854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:278
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):74, 28

               
               
               Conread position:499-937
               
               
               Cow position:chr1:33719830-33720289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:466
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):18, 26

               
               
               Conread position:501-687
               
               
               Cow position:chr1:54484784-54484976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):71, 58

               
               
               Conread position:501-888
               
               
               Cow position:chr1:73960418-73960818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 16

               
               
               Conread position:502-938
               
               
               Cow position:chr1:25183842-25184278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:454
               
               
               Alignm identity:297
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):15, 24

               
               
               Conread position:503-889
               
               
               Cow position:chr1:4290871-4291283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:284
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):18, 35

               
               
               Conread position:504-943
               
               
               Cow position:chr1:7657596-7657143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:465
               
               
               Alignm identity:311
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):21, 191

               
               
               Conread position:505-880
               
               
               Cow position:chr1:83747661-83748052 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:281
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):17, 49

               
               
               Conread position:505-938
               
               
               Cow position:chr1:32341484-32341029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:464
               
               
               Alignm identity:312
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):71, 20

               
               
               Conread position:508-843
               
               
               Cow position:chr1:1991704-1991350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:251
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):45, 19

               
               
               Conread position:509-850
               
               
               Cow position:chr1:4374612-4374262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:250
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):66, 8

               
               
               Conread position:509-938
               
               
               Cow position:chr1:26688752-26688305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):66, 17

               
               
               Conread position:510-938
               
               
               Cow position:chr1:72012077-72011636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 15

               
               
               Conread position:514-788
               
               
               Cow position:chr1:56657771-56658045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:188
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):93, 19

               
               
               Conread position:515-731
               
               
               Cow position:chr1:95327423-95327199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 6

               
               
               Conread position:515-850
               
               
               Cow position:chr1:85774188-85774532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:227
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):10, 140

               
               
               Conread position:515-892
               
               
               Cow position:chr1:51394149-51394539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:269
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):55, 132

               
               
               Conread position:516-889
               
               
               Cow position:chr1:79165361-79164975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:275
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:518-850
               
               
               Cow position:chr1:54207083-54206741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 53

               
               
               Conread position:518-938
               
               
               Cow position:chr1:20001016-20000570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 124

               
               
               Conread position:518-938
               
               
               Cow position:chr1:57119608-57119180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 7

               
               
               Conread position:519-679
               
               
               Cow position:chr1:80184005-80183839 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):53, 126

               
               
               Conread position:519-892
               
               
               Cow position:chr1:23969303-23968936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:261
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):52, 109

               
               
               Conread position:520-730
               
               
               Cow position:chr1:82861508-82861732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:520-815
               
               
               Cow position:chr1:22448849-22448542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 39

               
               
               Conread position:520-816
               
               
               Cow position:chr1:56719048-56719342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):43, 75

               
               
               Conread position:520-884
               
               
               Cow position:chr1:82936847-82936483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:520-889
               
               
               Cow position:chr1:39418383-39417996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:268
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):50, 120

               
               
               Conread position:520-889
               
               
               Cow position:chr1:94226813-94226436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 117

               
               
               Conread position:520-893
               
               
               Cow position:chr1:36997932-36998308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:263
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:521-764
               
               
               Cow position:chr1:77099804-77099565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):44, 91

               
               
               Conread position:521-884
               
               
               Cow position:chr1:72286313-72285954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):51, 38

               
               
               Conread position:521-889
               
               
               Cow position:chr1:39069214-39068837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 5

               
               
               Conread position:522-845
               
               
               Cow position:chr1:73584665-73584340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):43, 121

               
               
               Conread position:522-871
               
               
               Cow position:chr1:47233738-47233387 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:237
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):50, 118

               
               
               Conread position:523-944
               
               
               Cow position:chr1:81161755-81162188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:295
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):52, 80

               
               
               Conread position:524-706
               
               
               Cow position:chr1:96193135-96192937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):23, 175

               
               
               Conread position:524-731
               
               
               Cow position:chr1:22628900-22628686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:154
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:524-818
               
               
               Cow position:chr1:61724286-61723977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):48, 81

               
               
               Conread position:524-850
               
               
               Cow position:chr1:15547208-15547545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:524-850
               
               
               Cow position:chr1:88652370-88652711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 35

               
               
               Conread position:524-888
               
               
               Cow position:chr1:76470398-76470761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):48, 86

               
               
               Conread position:524-935
               
               
               Cow position:chr1:56225216-56225627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):48, 31

               
               
               Conread position:524-936
               
               
               Cow position:chr1:91066409-91065973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 92

               
               
               Conread position:524-937
               
               
               Cow position:chr1:80764796-80764369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 120

               
               
               Conread position:524-938
               
               
               Cow position:chr1:22777812-22777376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:296
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):51, 121

               
               
               Conread position:524-940
               
               
               Cow position:chr1:42555009-42555431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:339
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 35

               
               
               Conread position:525-694
               
               
               Cow position:chr1:3872591-3872765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 119

               
               
               Conread position:526-677
               
               
               Cow position:chr1:52510502-52510346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):46, 116

               
               
               Conread position:526-693
               
               
               Cow position:chr1:15028427-15028593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):81, 41

               
               
               Conread position:526-719
               
               
               Cow position:chr1:56748331-56748533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:526-726
               
               
               Cow position:chr1:20521941-20521741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):47, 78

               
               
               Conread position:526-731
               
               
               Cow position:chr1:52506803-52506603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):45, 91

               
               
               Conread position:526-731
               
               
               Cow position:chr1:99136689-99136479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):44, 117

               
               
               Conread position:526-756
               
               
               Cow position:chr1:53613440-53613216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):81, 36

               
               
               Conread position:526-760
               
               
               Cow position:chr1:31548579-31548818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 202

               
               
               Conread position:526-771
               
               
               Cow position:chr1:33811675-33811921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 91

               
               
               Conread position:526-781
               
               
               Cow position:chr1:13455884-13456148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):49, 246

               
               
               Conread position:526-789
               
               
               Cow position:chr1:63905733-63905461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):46, 233

               
               
               Conread position:526-796
               
               
               Cow position:chr1:71818718-71818442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 17

               
               
               Conread position:526-807
               
               
               Cow position:chr1:3137673-3137957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:192
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):15, 84

               
               
               Conread position:526-810
               
               
               Cow position:chr1:32244658-32244361 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):49, 63

               
               
               Conread position:526-811
               
               
               Cow position:chr1:57264245-57263957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:221
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):46, 33

               
               
               Conread position:526-815
               
               
               Cow position:chr1:43380288-43379985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:526-817
               
               
               Cow position:chr1:57247177-57247476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 121

               
               
               Conread position:526-839
               
               
               Cow position:chr1:21460611-21460936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):46, 21

               
               
               Conread position:526-840
               
               
               Cow position:chr1:45535443-45535771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:526-845
               
               
               Cow position:chr1:51628761-51628443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:526-845
               
               
               Cow position:chr1:81613126-81613459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:230
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:526-845
               
               
               Cow position:chr1:92437250-92436920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:526-846
               
               
               Cow position:chr1:85783267-85783587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:526-849
               
               
               Cow position:chr1:27145911-27145579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 320

               
               
               Conread position:526-849
               
               
               Cow position:chr1:68253332-68253668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):49, 119

               
               
               Conread position:526-850
               
               
               Cow position:chr1:31348167-31347859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):46, 27

               
               
               Conread position:526-850
               
               
               Cow position:chr1:61742227-61741893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 168

               
               
               Conread position:526-850
               
               
               Cow position:chr1:64251308-64250977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:526-850
               
               
               Cow position:chr1:81290259-81290581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 114

               
               
               Conread position:526-850
               
               
               Cow position:chr1:81913411-81913080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 153

               
               
               Conread position:526-850
               
               
               Cow position:chr1:98551458-98551795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):46, 22

               
               
               Conread position:526-850
               
               
               Cow position:chr1:102647528-102647198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 115

               
               
               Conread position:526-851
               
               
               Cow position:chr1:34300807-34300475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:235
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):39, 118

               
               
               Conread position:526-853
               
               
               Cow position:chr1:57635208-57635542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:240
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):44, 33

               
               
               Conread position:526-875
               
               
               Cow position:chr1:82884644-82884290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:248
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):79, 37

               
               
               Conread position:526-879
               
               
               Cow position:chr1:81868986-81868620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:526-888
               
               
               Cow position:chr1:101822755-101822397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:254
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:526-889
               
               
               Cow position:chr1:52488217-52487862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):27, 45

               
               
               Conread position:526-889
               
               
               Cow position:chr1:68818055-68817680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:249
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):44, 37

               
               
               Conread position:526-890
               
               
               Cow position:chr1:34856888-34856508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:256
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):39, 81

               
               
               Conread position:526-890
               
               
               Cow position:chr1:84240641-84241000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):49, 33

               
               
               Conread position:526-891
               
               
               Cow position:chr1:2075587-2075241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:248
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):46, 111

               
               
               Conread position:526-892
               
               
               Cow position:chr1:197261-196885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:257
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 45

               
               
               Conread position:526-897
               
               
               Cow position:chr1:80336509-80336122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:262
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 187

               
               
               Conread position:526-914
               
               
               Cow position:chr1:80973873-80973465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:286
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:526-927
               
               
               Cow position:chr1:74084448-74084040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:286
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):82, 48

               
               
               Conread position:526-936
               
               
               Cow position:chr1:74947376-74946955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 56

               
               
               Conread position:526-937
               
               
               Cow position:chr1:37309763-37309365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:526-938
               
               
               Cow position:chr1:3657626-3657199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:278
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:526-938
               
               
               Cow position:chr1:6165992-6166418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:286
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):36, 84

               
               
               Conread position:526-938
               
               
               Cow position:chr1:12871266-12870824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:311
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):46, 119

               
               
               Conread position:526-938
               
               
               Cow position:chr1:30066380-30066788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:526-938
               
               
               Cow position:chr1:40599793-40600211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:268
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):82, 44

               
               
               Conread position:526-938
               
               
               Cow position:chr1:61736844-61737263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:287
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):47, 37

               
               
               Conread position:526-938
               
               
               Cow position:chr1:64302491-64302064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):198, 79

               
               
               Conread position:526-938
               
               
               Cow position:chr1:70534193-70533771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 120

               
               
               Conread position:526-938
               
               
               Cow position:chr1:77720486-77720074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:288
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):79, 26

               
               
               Conread position:526-938
               
               
               Cow position:chr1:85028702-85029122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:272
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 33

               
               
               Conread position:526-938
               
               
               Cow position:chr1:95765348-95764926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 162

               
               
               Conread position:526-940
               
               
               Cow position:chr1:19465803-19466224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 114

               
               
               Conread position:527-687
               
               
               Cow position:chr1:3076649-3076490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):45, 103

               
               
               Conread position:527-754
               
               
               Cow position:chr1:97620098-97619859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:174
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):48, 32

               
               
               Conread position:527-846
               
               
               Cow position:chr1:6939897-6939564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):49, 164

               
               
               Conread position:527-849
               
               
               Cow position:chr1:79278692-79278373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 16

               
               
               Conread position:527-850
               
               
               Cow position:chr1:55146543-55146873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:527-887
               
               
               Cow position:chr1:93810185-93810546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:258
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):187, 81

               
               
               Conread position:527-889
               
               
               Cow position:chr1:70828656-70829021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):197, 71

               
               
               Conread position:527-890
               
               
               Cow position:chr1:75744602-75744982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:527-936
               
               
               Cow position:chr1:53039957-53039544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:527-938
               
               
               Cow position:chr1:21787068-21787510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:527-938
               
               
               Cow position:chr1:54478064-54478502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 117

               
               
               Conread position:528-812
               
               
               Cow position:chr1:47008770-47009069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):28, 108

               
               
               Conread position:528-889
               
               
               Cow position:chr1:1165343-1165705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:260
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):29, 174

               
               
               Conread position:528-938
               
               
               Cow position:chr1:93110882-93110446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:529-724
               
               
               Cow position:chr1:67014128-67014333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):42, 30

               
               
               Conread position:529-728
               
               
               Cow position:chr1:12596157-12595955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:148
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 62

               
               
               Conread position:529-769
               
               
               Cow position:chr1:50634662-50634410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:529-846
               
               
               Cow position:chr1:6795192-6794854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 307

               
               
               Conread position:529-849
               
               
               Cow position:chr1:48444438-48444120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):41, 91

               
               
               Conread position:529-849
               
               
               Cow position:chr1:93499366-93499695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):46, 185

               
               
               Conread position:529-850
               
               
               Cow position:chr1:21835692-21836006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):46, 117

               
               
               Conread position:529-935
               
               
               Cow position:chr1:31871164-31871592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:296
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 302

               
               
               Conread position:530-848
               
               
               Cow position:chr1:7350283-7350621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:530-889
               
               
               Cow position:chr1:4032379-4032751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:261
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):42, 80

               
               
               Conread position:530-943
               
               
               Cow position:chr1:54199635-54199202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:291
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):78, 41

               
               
               Conread position:531-714
               
               
               Cow position:chr1:37646255-37646071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):33, 110

               
               
               Conread position:531-718
               
               
               Cow position:chr1:99118131-99118327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:145
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):38, 188

               
               
               Conread position:531-819
               
               
               Cow position:chr1:55163668-55163962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):41, 147

               
               
               Conread position:531-835
               
               
               Cow position:chr1:61564537-61564853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:531-843
               
               
               Cow position:chr1:99807976-99807648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:531-844
               
               
               Cow position:chr1:68276153-68276480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):22, 117

               
               
               Conread position:531-845
               
               
               Cow position:chr1:63391026-63390697 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:223
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:531-848
               
               
               Cow position:chr1:44164825-44165158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):40, 31

               
               
               Conread position:531-850
               
               
               Cow position:chr1:91800862-91800525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:531-889
               
               
               Cow position:chr1:1956583-1956216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:257
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 114

               
               
               Conread position:531-889
               
               
               Cow position:chr1:10778320-10778682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):39, 28

               
               
               Conread position:531-935
               
               
               Cow position:chr1:28678284-28678687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 12

               
               
               Conread position:531-937
               
               
               Cow position:chr1:100551716-100552151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:293
               
               
               Alignm E-value:9.00054e-42
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:531-938
               
               
               Cow position:chr1:31190358-31189948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):74, 49

               
               
               Conread position:531-938
               
               
               Cow position:chr1:82378540-82378958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 29

               
               
               Conread position:531-938
               
               
               Cow position:chr1:88338443-88338836 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:287
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):74, 149

               
               
               Conread position:531-939
               
               
               Cow position:chr1:46940116-46939690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:288
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):41, 114

               
               
               Conread position:532-849
               
               
               Cow position:chr1:85162800-85162473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:532-850
               
               
               Cow position:chr1:36931906-36932229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 103

               
               
               Conread position:532-889
               
               
               Cow position:chr1:35162151-35162529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:259
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:533-714
               
               
               Cow position:chr1:81363742-81363918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 61

               
               
               Conread position:533-718
               
               
               Cow position:chr1:14379782-14379597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):31, 66

               
               
               Conread position:533-729
               
               
               Cow position:chr1:41004619-41004412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:533-729
               
               
               Cow position:chr1:97806540-97806739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:533-739
               
               
               Cow position:chr1:36613527-36613315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 33

               
               
               Conread position:533-807
               
               
               Cow position:chr1:82504715-82505007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):37, 257

               
               
               Conread position:533-821
               
               
               Cow position:chr1:100770987-100770707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:195
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):126, 10

               
               
               Conread position:533-845
               
               
               Cow position:chr1:52496524-52496840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):37, 114

               
               
               Conread position:533-845
               
               
               Cow position:chr1:86113665-86113330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):39, 265

               
               
               Conread position:533-849
               
               
               Cow position:chr1:100800105-100800427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):44, 26

               
               
               Conread position:533-850
               
               
               Cow position:chr1:44769363-44769034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):7, 114

               
               
               Conread position:533-850
               
               
               Cow position:chr1:78810784-78811113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):37, 197

               
               
               Conread position:533-851
               
               
               Cow position:chr1:33997164-33996848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):32, 93

               
               
               Conread position:533-851
               
               
               Cow position:chr1:47658103-47658421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:215
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):75, 104

               
               
               Conread position:533-876
               
               
               Cow position:chr1:16855940-16855593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):37, 20

               
               
               Conread position:533-889
               
               
               Cow position:chr1:8349563-8349205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:253
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):37, 74

               
               
               Conread position:533-889
               
               
               Cow position:chr1:48105686-48105317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:241
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 111

               
               
               Conread position:533-889
               
               
               Cow position:chr1:54258315-54258685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:268
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):31, 99

               
               
               Conread position:533-889
               
               
               Cow position:chr1:89742264-89741876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:266
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):39, 249

               
               
               Conread position:533-892
               
               
               Cow position:chr1:90868688-90868319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 109

               
               
               Conread position:533-893
               
               
               Cow position:chr1:95215438-95215068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 226

               
               
               Conread position:533-930
               
               
               Cow position:chr1:31390836-31390428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 22

               
               
               Conread position:533-933
               
               
               Cow position:chr1:66430049-66430455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:282
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):72, 26

               
               
               Conread position:533-938
               
               
               Cow position:chr1:35170085-35170494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:287
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:533-938
               
               
               Cow position:chr1:63504087-63504500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 26

               
               
               Conread position:533-938
               
               
               Cow position:chr1:95017765-95017374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:280
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:533-940
               
               
               Cow position:chr1:45020055-45019618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:310
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):39, 26

               
               
               Conread position:534-788
               
               
               Cow position:chr1:57900992-57900729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):30, 112

               
               
               Conread position:534-788
               
               
               Cow position:chr1:75967185-75967443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):38, 83

               
               
               Conread position:534-804
               
               
               Cow position:chr1:1403721-1403453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 37

               
               
               Conread position:534-850
               
               
               Cow position:chr1:5023991-5023687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):23, 77

               
               
               Conread position:534-850
               
               
               Cow position:chr1:22826918-22827233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):42, 100

               
               
               Conread position:534-850
               
               
               Cow position:chr1:53458454-53458770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):29, 73

               
               
               Conread position:534-875
               
               
               Cow position:chr1:63435054-63434701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:246
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):71, 37

               
               
               Conread position:534-889
               
               
               Cow position:chr1:24534494-24534138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:256
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):38, 71

               
               
               Conread position:534-889
               
               
               Cow position:chr1:71253806-71253437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:243
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):38, 69

               
               
               Conread position:534-889
               
               
               Cow position:chr1:72069078-72068715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:258
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):38, 75

               
               
               Conread position:534-889
               
               
               Cow position:chr1:96365423-96365777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:246
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):29, 93

               
               
               Conread position:534-892
               
               
               Cow position:chr1:99642621-99642246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 269

               
               
               Conread position:534-938
               
               
               Cow position:chr1:3924045-3923618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 109

               
               
               Conread position:535-730
               
               
               Cow position:chr1:98708192-98708391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):37, 100

               
               
               Conread position:535-731
               
               
               Cow position:chr1:56073712-56073509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 163

               
               
               Conread position:535-734
               
               
               Cow position:chr1:77657816-77658022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):36, 24

               
               
               Conread position:535-846
               
               
               Cow position:chr1:75443667-75443360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):43, 109

               
               
               Conread position:535-850
               
               
               Cow position:chr1:45289123-45288796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 133

               
               
               Conread position:535-892
               
               
               Cow position:chr1:53308642-53308273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:262
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 24

               
               
               Conread position:535-892
               
               
               Cow position:chr1:69695259-69694872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:266
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):28, 115

               
               
               Conread position:535-892
               
               
               Cow position:chr1:82338035-82337658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 57

               
               
               Conread position:535-938
               
               
               Cow position:chr1:39427231-39426831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:290
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):35, 71

               
               
               Conread position:535-938
               
               
               Cow position:chr1:46218333-46218736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 107

               
               
               Conread position:535-938
               
               
               Cow position:chr1:78791557-78791141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 93

               
               
               Conread position:535-940
               
               
               Cow position:chr1:7143099-7142692 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:282
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):40, 109

               
               
               Conread position:535-940
               
               
               Cow position:chr1:42138615-42139027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:290
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):29, 114

               
               
               Conread position:535-940
               
               
               Cow position:chr1:71045505-71045923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:535-940
               
               
               Cow position:chr1:71135903-71136319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:292
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:536-687
               
               
               Cow position:chr1:58439295-58439143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):104, 35

               
               
               Conread position:536-731
               
               
               Cow position:chr1:44136711-44136514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:148
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 90

               
               
               Conread position:536-789
               
               
               Cow position:chr1:3340688-3340951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 177

               
               
               Conread position:536-815
               
               
               Cow position:chr1:43839278-43839568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):36, 105

               
               
               Conread position:536-850
               
               
               Cow position:chr1:53520657-53520986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:536-936
               
               
               Cow position:chr1:25793689-25793274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:281
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):39, 177

               
               
               Conread position:536-938
               
               
               Cow position:chr1:52415208-52414797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:272
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:536-938
               
               
               Cow position:chr1:66355957-66355547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):39, 23

               
               
               Conread position:537-889
               
               
               Cow position:chr1:78857570-78857210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):33, 170

               
               
               Conread position:537-892
               
               
               Cow position:chr1:70538355-70538733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:246
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:537-930
               
               
               Cow position:chr1:31414206-31413818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:537-938
               
               
               Cow position:chr1:34159584-34160014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:537-938
               
               
               Cow position:chr1:95176687-95177104 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 200

               
               
               Conread position:538-875
               
               
               Cow position:chr1:101834593-101834920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:232
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):208, 32

               
               
               Conread position:538-938
               
               
               Cow position:chr1:56477348-56477771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 21

               
               
               Conread position:539-825
               
               
               Cow position:chr1:20384867-20384574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):26, 111

               
               
               Conread position:539-872
               
               
               Cow position:chr1:51531527-51531853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:242
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):32, 96

               
               
               Conread position:539-890
               
               
               Cow position:chr1:48580884-48581248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):22, 110

               
               
               Conread position:539-938
               
               
               Cow position:chr1:59650020-59650437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:287
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:540-889
               
               
               Cow position:chr1:84239352-84239004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):32, 67

               
               
               Conread position:540-938
               
               
               Cow position:chr1:10064223-10063819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:289
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):35, 19

               
               
               Conread position:540-943
               
               
               Cow position:chr1:88911131-88910729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 26

               
               
               Conread position:542-889
               
               
               Cow position:chr1:95056812-95057164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:543-834
               
               
               Cow position:chr1:83082760-83083067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:543-874
               
               
               Cow position:chr1:56634854-56635202 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 107

               
               
               Conread position:543-887
               
               
               Cow position:chr1:53424945-53425294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):31, 85

               
               
               Conread position:543-890
               
               
               Cow position:chr1:3962926-3962567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):29, 63

               
               
               Conread position:543-892
               
               
               Cow position:chr1:88618350-88618716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:250
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):20, 189

               
               
               Conread position:543-938
               
               
               Cow position:chr1:97622440-97622053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 101

               
               
               Conread position:545-728
               
               
               Cow position:chr1:94403976-94404161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:134
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):21, 95

               
               
               Conread position:545-889
               
               
               Cow position:chr1:7442745-7443095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):25, 103

               
               
               Conread position:545-890
               
               
               Cow position:chr1:41696817-41697175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:238
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):60, 27

               
               
               Conread position:545-936
               
               
               Cow position:chr1:8869904-8869511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:412
               
               
               Alignm identity:280
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):31, 103

               
               
               Conread position:545-938
               
               
               Cow position:chr1:62732335-62732732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:268
               
               
               Alignm E-value:8.00001e-41
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:546-764
               
               
               Cow position:chr1:51836332-51836555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:546-938
               
               
               Cow position:chr1:26729489-26729861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:279
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):26, 13

               
               
               Conread position:546-938
               
               
               Cow position:chr1:51256797-51257181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:254
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):16, 44

               
               
               Conread position:547-845
               
               
               Cow position:chr1:70297033-70297348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):25, 145

               
               
               Conread position:547-935
               
               
               Cow position:chr1:64189264-64189665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:262
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):24, 81

               
               
               Conread position:547-938
               
               
               Cow position:chr1:76096201-76096600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:272
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:555-710
               
               
               Cow position:chr1:99543279-99543119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):9, 89

               
               
               Conread position:555-789
               
               
               Cow position:chr1:64962885-64962654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):17, 45

               
               
               Conread position:555-872
               
               
               Cow position:chr1:53411140-53410829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:222
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):10, 69

               
               
               Conread position:555-939
               
               
               Cow position:chr1:73761582-73761203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:269
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):17, 78

               
               
               Conread position:556-815
               
               
               Cow position:chr1:31235161-31234892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):16, 182

               
               
               Conread position:556-844
               
               
               Cow position:chr1:89076865-89076564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:202
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:556-938
               
               
               Cow position:chr1:65664836-65665219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:253
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):55, 42

               
               
               Conread position:557-938
               
               
               Cow position:chr1:69415945-69415543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 229

               
               
               Conread position:559-940
               
               
               Cow position:chr1:6305093-6304689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:269
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):46, 234

               
               
               Conread position:567-850
               
               
               Cow position:chr1:90976300-90976013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 69

               
               
               Conread position:567-936
               
               
               Cow position:chr1:52052920-52052549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 41

               
               
               Conread position:569-921
               
               
               Cow position:chr1:20099149-20099513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):38, 146

               
               
               Conread position:570-925
               
               
               Cow position:chr1:30441743-30442111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 66

               
               
               Conread position:571-794
               
               
               Cow position:chr1:53540178-53540409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):37, 136

               
               
               Conread position:571-815
               
               
               Cow position:chr1:52956047-52956297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):39, 55

               
               
               Conread position:571-837
               
               
               Cow position:chr1:54163022-54162742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:571-889
               
               
               Cow position:chr1:11728965-11729294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:222
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):34, 193

               
               
               Conread position:571-889
               
               
               Cow position:chr1:49433477-49433145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:236
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 135

               
               
               Conread position:571-889
               
               
               Cow position:chr1:78809671-78809995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):34, 71

               
               
               Conread position:571-892
               
               
               Cow position:chr1:8287826-8287509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):32, 74

               
               
               Conread position:571-941
               
               
               Cow position:chr1:74956236-74955843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:268
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):34, 260

               
               
               Conread position:572-815
               
               
               Cow position:chr1:71643875-71643624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):36, 171

               
               
               Conread position:573-938
               
               
               Cow position:chr1:75382781-75383149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:264
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 115

               
               
               Conread position:574-795
               
               
               Cow position:chr1:81277411-81277192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:574-892
               
               
               Cow position:chr1:34771713-34771382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 48

               
               
               Conread position:574-941
               
               
               Cow position:chr1:68862826-68863208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):34, 44

               
               
               Conread position:576-844
               
               
               Cow position:chr1:98310854-98311141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):29, 171

               
               
               Conread position:576-892
               
               
               Cow position:chr1:12464871-12464542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 56

               
               
               Conread position:578-850
               
               
               Cow position:chr1:75141801-75142072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):30, 60

               
               
               Conread position:580-845
               
               
               Cow position:chr1:72103643-72103920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):25, 62

               
               
               Conread position:581-889
               
               
               Cow position:chr1:28563771-28563450 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:581-893
               
               
               Cow position:chr1:46030555-46030242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):27, 57

               
               
               Conread position:584-809
               
               
               Cow position:chr1:81470929-81471166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):21, 204

               
               
               Conread position:584-851
               
               
               Cow position:chr1:94261348-94261612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:183
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:584-938
               
               
               Cow position:chr1:43340822-43340447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:250
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):21, 245

               
               
               Conread position:586-936
               
               
               Cow position:chr1:41115906-41115552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):138, 27

               
               
               Conread position:589-889
               
               
               Cow position:chr1:73196425-73196110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 84

               
               
               Conread position:590-850
               
               
               Cow position:chr1:86110914-86110669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):134, 18

               
               
               Conread position:592-850
               
               
               Cow position:chr1:6788475-6788208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):50, 9

               
               
               Conread position:595-889
               
               
               Cow position:chr1:65318393-65318693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:223
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):15, 29

               
               
               Conread position:599-890
               
               
               Cow position:chr1:484650-484348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 43

               
               
               Conread position:599-891
               
               
               Cow position:chr1:57297299-57297600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):82, 38

               
               
               Conread position:603-850
               
               
               Cow position:chr1:69540123-69540357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:603-936
               
               
               Cow position:chr1:9534000-9534326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 34

               
               
               Conread position:604-815
               
               
               Cow position:chr1:80631524-80631738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 121

               
               
               Conread position:604-829
               
               
               Cow position:chr1:70028404-70028634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):37, 190

               
               
               Conread position:604-845
               
               
               Cow position:chr1:724560-724810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:604-851
               
               
               Cow position:chr1:101701821-101701571 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):75, 122

               
               
               Conread position:604-890
               
               
               Cow position:chr1:32001495-32001201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):33, 45

               
               
               Conread position:604-890
               
               
               Cow position:chr1:54156915-54156614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):23, 13

               
               
               Conread position:604-921
               
               
               Cow position:chr1:75933098-75933414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 30

               
               
               Conread position:604-935
               
               
               Cow position:chr1:13195599-13195269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 172

               
               
               Conread position:604-938
               
               
               Cow position:chr1:20667916-20667564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:260
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):82, 33

               
               
               Conread position:604-938
               
               
               Cow position:chr1:23099725-23100068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 33

               
               
               Conread position:604-943
               
               
               Cow position:chr1:61225135-61225453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):33, 51

               
               
               Conread position:605-938
               
               
               Cow position:chr1:20581775-20582108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:224
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):92, 33

               
               
               Conread position:606-920
               
               
               Cow position:chr1:60281194-60281521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:234
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):36, 306

               
               
               Conread position:606-930
               
               
               Cow position:chr1:88322098-88321785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):228, 32

               
               
               Conread position:607-890
               
               
               Cow position:chr1:33207046-33206760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:200
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):35, 127

               
               
               Conread position:607-902
               
               
               Cow position:chr1:50345371-50345677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):39, 29

               
               
               Conread position:608-807
               
               
               Cow position:chr1:51684631-51684838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):68, 13

               
               
               Conread position:610-850
               
               
               Cow position:chr1:59518752-59518990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):114, 27

               
               
               Conread position:610-937
               
               
               Cow position:chr1:2997775-2998117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:230
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):10, 27

               
               
               Conread position:610-938
               
               
               Cow position:chr1:20544123-20544453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:231
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):35, 62

               
               
               Conread position:613-921
               
               
               Cow position:chr1:75347451-75347775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:614-938
               
               
               Cow position:chr1:96472276-96472601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):30, 138

               
               
               Conread position:615-938
               
               
               Cow position:chr1:70434840-70435172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:233
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):143, 22

               
               
               Conread position:618-853
               
               
               Cow position:chr1:101946867-101946636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):106, 19

               
               
               Conread position:619-875
               
               
               Cow position:chr1:77683198-77683457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):105, 18

               
               
               Conread position:619-888
               
               
               Cow position:chr1:72105255-72105524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):18, 9

               
               
               Conread position:619-892
               
               
               Cow position:chr1:97696581-97696865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 17

               
               
               Conread position:619-934
               
               
               Cow position:chr1:24407058-24406732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):27, 9

               
               
               Conread position:622-849
               
               
               Cow position:chr1:182647-182878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:622-850
               
               
               Cow position:chr1:9470554-9470323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):36, 15

               
               
               Conread position:622-890
               
               
               Cow position:chr1:96081328-96081599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):52, 15

               
               
               Conread position:622-892
               
               
               Cow position:chr1:97938809-97939078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 14

               
               
               Conread position:622-919
               
               
               Cow position:chr1:93554687-93554982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:216
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):54, 15

               
               
               Conread position:623-836
               
               
               Cow position:chr1:24445782-24445567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):101, 12

               
               
               Conread position:623-889
               
               
               Cow position:chr1:88913162-88913438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 20

               
               
               Conread position:625-850
               
               
               Cow position:chr1:43703254-43703484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):99, 10

               
               
               Conread position:628-892
               
               
               Cow position:chr1:57420878-57420615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:635-821
               
               
               Cow position:chr1:93228380-93228570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:131
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:638-938
               
               
               Cow position:chr1:30047736-30047441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):84, 169

               
               
               Conread position:638-938
               
               
               Cow position:chr1:39225067-39224753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-40
               
               
               Alignm gaps (pig, cow):86, 42

               
               
               Conread position:639-912
               
               
               Cow position:chr1:6734323-6734592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):57, 31

               
               
               Conread position:639-935
               
               
               Cow position:chr1:50045658-50045965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:211
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):57, 174

               
               
               Conread position:643-789
               
               
               Cow position:chr1:70312942-70312792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:643-856
               
               
               Cow position:chr1:7609478-7609700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):59, 209

               
               
               Conread position:643-874
               
               
               Cow position:chr1:31272578-31272338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:643-892
               
               
               Cow position:chr1:23512792-23512539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):108, 85

               
               
               Conread position:643-892
               
               
               Cow position:chr1:24778122-24777872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:643-925
               
               
               Cow position:chr1:26531715-26531427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):91, 11

               
               
               Conread position:644-930
               
               
               Cow position:chr1:72731902-72732200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 58

               
               
               Conread position:644-939
               
               
               Cow position:chr1:85141868-85141567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):53, 131

               
               
               Conread position:647-892
               
               
               Cow position:chr1:85550211-85549955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:647-938
               
               
               Cow position:chr1:541671-541961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-40
               
               
               Alignm gaps (pig, cow):150, 71

               
               
               Conread position:651-884
               
               
               Cow position:chr1:61543046-61542805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:658-889
               
               
               Cow position:chr1:72813490-72813735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):14, 126

               
               
               Conread position:664-894
               
               
               Cow position:chr1:6826405-6826176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):92, 58

               
               
               Conread position:668-938
               
               
               Cow position:chr1:15902379-15902662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):41, 16

               
               
               Conread position:669-938
               
               
               Cow position:chr1:26427973-26427694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 39

               
               
               Conread position:670-851
               
               
               Cow position:chr1:87936789-87936974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:670-938
               
               
               Cow position:chr1:60509566-60509298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):54, 92

               
               
               Conread position:670-938
               
               
               Cow position:chr1:81582012-81582281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):143, 56

               
               
               Conread position:680-938
               
               
               Cow position:chr1:42541496-42541777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):30, 276

               
               
               Conread position:681-936
               
               
               Cow position:chr1:59132312-59132051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):16, 80

               
               
               Conread position:694-923
               
               
               Cow position:chr1:100474145-100474383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):33, 199

               
               
               Conread position:696-921
               
               
               Cow position:chr1:96928948-96929184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:169
               
               
               Alignm E-value:9e-21
               
               
               Alignm gaps (pig, cow):28, 141

               
               
               Conread position:698-919
               
               
               Cow position:chr1:96192745-96192512 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:708-924
               
               
               Cow position:chr1:59147414-59147191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:166
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):40, 24

               
               
               Conread position:713-938
               
               
               Cow position:chr1:51565465-51565696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:170
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):11, 90

               
               
               Conread position:723-937
               
               
               Cow position:chr1:97962586-97962810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):9, 88

               
               
               Conread position:735-938
               
               
               Cow position:chr1:23759741-23759951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):93, 5

               
               
               Conread position:741-901
               
               
               Cow position:chr1:39121870-39121706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:126
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):111, 20

               
               
               Conread position:742-938
               
               
               Cow position:chr1:12430295-12430105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):14, 21

               
               
               Conread position:745-938
               
               
               Cow position:chr1:54289222-54289024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):83, 23

               
               
               Conread position:745-938
               
               
               Cow position:chr1:64218458-64218262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):11, 74

               
               
               Conread position:746-938
               
               
               Cow position:chr1:5006133-5006330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):101, 15

               
               
               Conread position:749-943
               
               
               Cow position:chr1:38205447-38205646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 179

               
               
               Conread position:751-938
               
               
               Cow position:chr1:5637083-5636886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):71, 14

               
               
               Conread position:752-940
               
               
               Cow position:chr1:47402505-47402693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):48, 9

               
               
               Conread position:753-930
               
               
               Cow position:chr1:46006227-46006045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):75, 15

               
               
               Conread position:755-930
               
               
               Cow position:chr1:62142505-62142324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:756-938
               
               
               Cow position:chr1:70416111-70416295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):66, 12

               
               
               Conread position:762-938
               
               
               Cow position:chr1:95229345-95229163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:778-937
               
               
               Cow position:chr1:45925042-45925206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:785-944
               
               
               Cow position:chr1:82076587-82076750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 152

               
               
               Conread position:796-938
               
               
               Cow position:chr1:79663418-79663267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:798-938
               
               
               Cow position:chr1:64624805-64624662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):30, 99

               
               
               Conread position:798-938
               
               
               Cow position:chr1:96043640-96043787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):28, 106

               
               
               Conread position:802-938
               
               
               Cow position:chr1:83926413-83926555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:115
               
               
               Alignm E-value:6e-28
               
               
               Alignm gaps (pig, cow):20, 0
Show alignments to all cow chromosomes.