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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8024N04.3
        

               
Conread position:
               
1-339
               

               
Cow position:
               
chr21:39077878-39077556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
187, 35
               

               
Conread position:
               
105-377
               

               
Cow position:
               
chr21:36163863-36163592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
215, 16
               

               
Conread position:
               
106-344
               

               
Cow position:
               
chr21:30565164-30565402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
159, 58
               

               
Conread position:
               
107-320
               

               
Cow position:
               
chr21:23802020-23801804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
16, 130
               

               
Conread position:
               
112-318
               

               
Cow position:
               
chr21:18837224-18837019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
112-342
               

               
Cow position:
               
chr21:13735735-13735507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-343
               

               
Cow position:
               
chr21:34900248-34900018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-344
               

               
Cow position:
               
chr21:11144424-11144193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-344
               

               
Cow position:
               
chr21:23585518-23585749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
154, 21
               

               
Conread position:
               
112-374
               

               
Cow position:
               
chr21:27148126-27147868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
113-279
               

               
Cow position:
               
chr21:14727114-14727276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
111, 14
               

               
Conread position:
               
113-281
               

               
Cow position:
               
chr21:11405453-11405286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-314
               

               
Cow position:
               
chr21:32573407-32573608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 31
               

               
Conread position:
               
113-318
               

               
Cow position:
               
chr21:38450561-38450364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr21:48234888-48234668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr21:4188963-4189195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
134, 23
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr21:4567379-4567600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
19, 27
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:6966045-6965816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:22463618-22463848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
18, 28
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:23329916-23329687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:26633803-26633574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:26757296-26757067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:30297906-30298135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:32237766-32237995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:34823603-34823832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:37298567-37298795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:38866185-38865956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:47168387-47168616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr21:48273770-48273541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:3253050-3253290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
41, 22
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:4719393-4719163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:5642412-5642180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
81, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:19351434-19351204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:23341078-23341308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:24887072-24887301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:26628195-26628425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:31949843-31950073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr21:41796294-41796068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-348
               

               
Cow position:
               
chr21:30627652-30627419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
13, 29
               

               
Conread position:
               
113-352
               

               
Cow position:
               
chr21:81173-81403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-356
               

               
Cow position:
               
chr21:31275770-31276013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-359
               

               
Cow position:
               
chr21:42460630-42460394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
153, 26
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr21:7047755-7047498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr21:19627281-19627026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr21:47648767-47649035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
17, 112
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr21:48195878-48196135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
114-318
               

               
Cow position:
               
chr21:1057887-1058093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
114-339
               

               
Cow position:
               
chr21:6765599-6765371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
35, 69
               

               
Conread position:
               
114-343
               

               
Cow position:
               
chr21:47532159-47532389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
26, 190
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr21:28988720-28988940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
153, 17
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr21:33728532-33728764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr21:46974305-46974077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
152, 18
               

               
Conread position:
               
115-295
               

               
Cow position:
               
chr21:38027047-38027227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr21:39400665-39400887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-364
               

               
Cow position:
               
chr21:4098004-4098255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
151, 29
               

               
Conread position:
               
115-375
               

               
Cow position:
               
chr21:2905363-2905109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-376
               

               
Cow position:
               
chr21:48262245-48262506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-392
               

               
Cow position:
               
chr21:9863509-9863242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
116-274
               

               
Cow position:
               
chr21:26699238-26699082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
119-342
               

               
Cow position:
               
chr21:27125288-27125063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
119-349
               

               
Cow position:
               
chr21:18829445-18829224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
12, 21
               

               
Conread position:
               
119-354
               

               
Cow position:
               
chr21:4079453-4079687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
22, 52
               

               
Conread position:
               
121-274
               

               
Cow position:
               
chr21:27428685-27428534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
12, 19
               

               
Conread position:
               
122-339
               

               
Cow position:
               
chr21:23448686-23448901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
133, 19
               

               
Conread position:
               
122-343
               

               
Cow position:
               
chr21:24697599-24697813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
144, 14
               

               
Conread position:
               
122-364
               

               
Cow position:
               
chr21:31252423-31252665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
10, 22
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr21:5020580-5020832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
143, 151
               

               
Conread position:
               
123-339
               

               
Cow position:
               
chr21:33983838-33983623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
11, 17
               

               
Conread position:
               
123-343
               

               
Cow position:
               
chr21:37323366-37323147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
123-377
               

               
Cow position:
               
chr21:42364371-42364628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
145, 93
               

               
Conread position:
               
124-338
               

               
Cow position:
               
chr21:16277841-16278052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
124-343
               

               
Cow position:
               
chr21:33901268-33901048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
141, 0
               

               
Conread position:
               
124-344
               

               
Cow position:
               
chr21:18285245-18285462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
124-354
               

               
Cow position:
               
chr21:44862156-44861932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
142, 21
               

               
Conread position:
               
124-372
               

               
Cow position:
               
chr21:17435564-17435313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
118, 102
               

               
Conread position:
               
124-374
               

               
Cow position:
               
chr21:3766331-3766084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
117, 11
               

               
Conread position:
               
124-377
               

               
Cow position:
               
chr21:4586240-4585984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
115, 21
               

               
Conread position:
               
126-339
               

               
Cow position:
               
chr21:21217036-21216823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
140, 54
               

               
Conread position:
               
126-361
               

               
Cow position:
               
chr21:18787072-18786842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
14, 112
               

               
Conread position:
               
126-377
               

               
Cow position:
               
chr21:2293745-2293487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr21:6623249-6623469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr21:36376429-36376637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
138, 92
               

               
Conread position:
               
127-377
               

               
Cow position:
               
chr21:43403998-43403744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
138, 23
               

               
Conread position:
               
127-389
               

               
Cow position:
               
chr21:28811146-28810886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
10, 45
               

               
Conread position:
               
128-372
               

               
Cow position:
               
chr21:39508529-39508293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
137, 102
               

               
Conread position:
               
131-377
               

               
Cow position:
               
chr21:27287419-27287667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
134, 142
               

               
Conread position:
               
136-343
               

               
Cow position:
               
chr21:16575999-16575791 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
136-371
               

               
Cow position:
               
chr21:33316918-33316678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
137-377
               

               
Cow position:
               
chr21:2878392-2878145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
138-354
               

               
Cow position:
               
chr21:19969681-19969903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
24, 50
               

               
Conread position:
               
139-293
               

               
Cow position:
               
chr21:39428853-39429008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr21:30966492-30966287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr21:33710049-33709844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr21:10570738-10570944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr21:27066148-27065942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr21:30595639-30595433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr21:32396575-32396374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr21:42917244-42917450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-349
               

               
Cow position:
               
chr21:44219130-44219341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 62
               

               
Conread position:
               
139-355
               

               
Cow position:
               
chr21:470745-470961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
127, 43
               

               
Conread position:
               
139-371
               

               
Cow position:
               
chr21:33257007-33257244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr21:29499989-29500220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 189
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:1195989-1196231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
126, 138
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:10853716-10853959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:20244149-20243906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:31512819-31512577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:42558225-42558468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr21:44762229-44761990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr21:25190102-25190350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
122, 208
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr21:27342950-27342700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
127, 108
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr21:29423512-29423754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
126, 172
               

               
Conread position:
               
140-316
               

               
Cow position:
               
chr21:18851260-18851086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
126, 94
               

               
Conread position:
               
140-330
               

               
Cow position:
               
chr21:20263224-20263033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
140-342
               

               
Cow position:
               
chr21:28210321-28210519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr21:2514303-2514503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr21:5596242-5596446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
51, 44
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr21:20910975-20910775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
127, 73
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr21:23783951-23783748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
99, 35
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr21:46831113-46830909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr21:43154-43359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr21:4791568-4791770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
188, 95
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr21:12802659-12802453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 23
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr21:16768671-16768466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
140-346
               

               
Cow position:
               
chr21:48291903-48291695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
140-353
               

               
Cow position:
               
chr21:2928422-2928207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
140-377
               

               
Cow position:
               
chr21:37147332-37147084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
82, 0
               

               
Conread position:
               
141-339
               

               
Cow position:
               
chr21:28908686-28908490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
141-377
               

               
Cow position:
               
chr21:39700980-39700741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
142-318
               

               
Cow position:
               
chr21:37344196-37344019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 42
               

               
Conread position:
               
142-337
               

               
Cow position:
               
chr21:13437554-13437750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
46, 42
               

               
Conread position:
               
143-308
               

               
Cow position:
               
chr21:18846880-18846715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
124, 37
               

               
Conread position:
               
143-339
               

               
Cow position:
               
chr21:38020639-38020831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 41
               

               
Conread position:
               
144-377
               

               
Cow position:
               
chr21:22855362-22855591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
122, 44
               

               
Conread position:
               
145-339
               

               
Cow position:
               
chr21:47360714-47360521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
119, 45
               

               
Conread position:
               
146-344
               

               
Cow position:
               
chr21:23501216-23501018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
120, 38
               

               
Conread position:
               
146-346
               

               
Cow position:
               
chr21:8126822-8126621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
8, 89
               

               
Conread position:
               
146-372
               

               
Cow position:
               
chr21:18979707-18979484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
120, 96
               

               
Conread position:
               
149-342
               

               
Cow position:
               
chr21:21000918-21000726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
22, 36
               

               
Conread position:
               
149-343
               

               
Cow position:
               
chr21:38899915-38900100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
119, 26
               

               
Conread position:
               
149-349
               

               
Cow position:
               
chr21:21412128-21411934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
42, 35
               

               
Conread position:
               
150-323
               

               
Cow position:
               
chr21:4722110-4722273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr21:12153285-12153471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 95
               

               
Conread position:
               
150-344
               

               
Cow position:
               
chr21:28881135-28881325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 31
               

               
Conread position:
               
150-366
               

               
Cow position:
               
chr21:22315993-22316201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
150-372
               

               
Cow position:
               
chr21:28028091-28028313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
14, 138
               

               
Conread position:
               
151-372
               

               
Cow position:
               
chr21:42842825-42842605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
115, 19
               

               
Conread position:
               
152-343
               

               
Cow position:
               
chr21:21966638-21966825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
152-377
               

               
Cow position:
               
chr21:4733073-4732850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
154-349
               

               
Cow position:
               
chr21:24297608-24297412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
21, 105
               

               
Conread position:
               
155-304
               

               
Cow position:
               
chr21:27375573-27375723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
155-306
               

               
Cow position:
               
chr21:33245799-33245647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-318
               

               
Cow position:
               
chr21:18573990-18574154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-335
               

               
Cow position:
               
chr21:649212-649032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
155-336
               

               
Cow position:
               
chr21:22719631-22719452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
28, 48
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr21:15546221-15546043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
111, 36
               

               
Conread position:
               
155-338
               

               
Cow position:
               
chr21:27263150-27263331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
111, 85
               

               
Conread position:
               
155-339
               

               
Cow position:
               
chr21:9010640-9010455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-339
               

               
Cow position:
               
chr21:34657458-34657642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-342
               

               
Cow position:
               
chr21:18931642-18931829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:3497039-3496850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:11509408-11509597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:25598140-25598320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 120
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:32773402-32773591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:36892765-36892576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr21:47977734-47977923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:2503209-2503399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
41, 139
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:4282946-4282754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
27, 150
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:5010003-5009812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:8071632-8071440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
110, 15
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:17721049-17721235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:27608235-27608045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:30850329-30850519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:40267955-40267775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr21:48530631-48530828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
155-352
               

               
Cow position:
               
chr21:13300291-13300482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
96, 31
               

               
Conread position:
               
155-352
               

               
Cow position:
               
chr21:13749626-13749826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
65, 9
               

               
Conread position:
               
155-354
               

               
Cow position:
               
chr21:13704543-13704342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
155-361
               

               
Cow position:
               
chr21:32534288-32534493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
111, 138
               

               
Conread position:
               
155-367
               

               
Cow position:
               
chr21:17207645-17207857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 193
               

               
Conread position:
               
155-372
               

               
Cow position:
               
chr21:17144155-17144377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-372
               

               
Cow position:
               
chr21:28915508-28915287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
155-372
               

               
Cow position:
               
chr21:36534741-36534523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
110, 187
               

               
Conread position:
               
155-373
               

               
Cow position:
               
chr21:28476769-28476978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
155-375
               

               
Cow position:
               
chr21:2419664-2419881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 46
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr21:149614-149841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr21:3782240-3782466 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
106, 93
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr21:26400302-26400075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr21:49655716-49655490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-389
               

               
Cow position:
               
chr21:9895824-9896053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
111, 191
               

               
Conread position:
               
155-393
               

               
Cow position:
               
chr21:14534080-14534320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
156-305
               

               
Cow position:
               
chr21:27522361-27522211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
156-322
               

               
Cow position:
               
chr21:25986883-25987049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
109, 97
               

               
Conread position:
               
156-338
               

               
Cow position:
               
chr21:21131209-21131026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 28
               

               
Conread position:
               
156-344
               

               
Cow position:
               
chr21:39470296-39470107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr21:45782264-45782070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
156-356
               

               
Cow position:
               
chr21:17415368-17415175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 8
               

               
Conread position:
               
156-377
               

               
Cow position:
               
chr21:4812876-4812650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
157-343
               

               
Cow position:
               
chr21:45174-45358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
84, 42
               

               
Conread position:
               
157-343
               

               
Cow position:
               
chr21:26830094-26829907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
159-343
               

               
Cow position:
               
chr21:36977466-36977284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
108, 67
               

               
Conread position:
               
159-344
               

               
Cow position:
               
chr21:4559603-4559416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
159-352
               

               
Cow position:
               
chr21:12571289-12571482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
107, 162
               

               
Conread position:
               
160-377
               

               
Cow position:
               
chr21:13111650-13111430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
160-389
               

               
Cow position:
               
chr21:13090318-13090086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
161-342
               

               
Cow position:
               
chr21:29665514-29665334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
30, 56
               

               
Conread position:
               
161-372
               

               
Cow position:
               
chr21:19973899-19974115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
163-344
               

               
Cow position:
               
chr21:7597796-7597614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
163-377
               

               
Cow position:
               
chr21:20588182-20588399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
103, 50
               

               
Conread position:
               
165-343
               

               
Cow position:
               
chr21:25156761-25156940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
165-349
               

               
Cow position:
               
chr21:23294007-23293827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
101, 6
               

               
Conread position:
               
166-313
               

               
Cow position:
               
chr21:28616731-28616881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
166-377
               

               
Cow position:
               
chr21:1766048-1765845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
100, 14
               

               
Conread position:
               
167-338
               

               
Cow position:
               
chr21:29213342-29213509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
99, 63
               

               
Conread position:
               
170-378
               

               
Cow position:
               
chr21:4278789-4279002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
190-389
               

               
Cow position:
               
chr21:28441945-28442146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
194-365
               

               
Cow position:
               
chr21:39059823-39059653 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
71, 86
               

               
Conread position:
               
195-343
               

               
Cow position:
               
chr21:10239881-10239732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
195-387
               

               
Cow position:
               
chr21:8890388-8890583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
204-372
               

               
Cow position:
               
chr21:48108667-48108498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 153
               

               
Conread position:
               
212-343
               

               
Cow position:
               
chr21:25813891-25813759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
56, 66
               

               
Conread position:
               
214-338
               

               
Cow position:
               
chr21:33349900-33350024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
353-511
               

               
Cow position:
               
chr21:28441963-28442119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 13
               

               
Conread position:
               
355-500
               

               
Cow position:
               
chr21:4739156-4739299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
457-850
               

               
Cow position:
               
chr21:44826143-44825753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
147, 62
               

               
Conread position:
               
475-850
               

               
Cow position:
               
chr21:30592547-30592176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
97, 41
               

               
Conread position:
               
481-842
               

               
Cow position:
               
chr21:22860756-22861127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
87, 7
               

               
Conread position:
               
483-810
               

               
Cow position:
               
chr21:17174894-17175239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 267
               

               
Conread position:
               
487-889
               

               
Cow position:
               
chr21:27569397-27568996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 34
               

               
Conread position:
               
487-938
               

               
Cow position:
               
chr21:15742333-15741859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
481
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
38, 141
               

               
Conread position:
               
494-850
               

               
Cow position:
               
chr21:10071161-10070794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 23
               

               
Conread position:
               
498-888
               

               
Cow position:
               
chr21:33562790-33563179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
74, 23
               

               
Conread position:
               
500-925
               

               
Cow position:
               
chr21:4098648-4099083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
448
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
71, 27
               

               
Conread position:
               
502-731
               

               
Cow position:
               
chr21:38691966-38692197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
15, 26
               

               
Conread position:
               
503-938
               

               
Cow position:
               
chr21:21223064-21223506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
454
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 57
               

               
Conread position:
               
504-906
               

               
Cow position:
               
chr21:24887787-24888183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
68, 17
               

               
Conread position:
               
506-851
               

               
Cow position:
               
chr21:19614953-19615310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 29
               

               
Conread position:
               
507-938
               

               
Cow position:
               
chr21:30849160-30848704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
466
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 21
               

               
Conread position:
               
508-850
               

               
Cow position:
               
chr21:39403755-39403392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
62, 16
               

               
Conread position:
               
511-850
               

               
Cow position:
               
chr21:32559571-32559232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
61, 146
               

               
Conread position:
               
511-924
               

               
Cow position:
               
chr21:34159737-34160159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
10, 43
               

               
Conread position:
               
514-808
               

               
Cow position:
               
chr21:5455197-5454901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 50
               

               
Conread position:
               
515-817
               

               
Cow position:
               
chr21:17674449-17674134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
56, 77
               

               
Conread position:
               
517-925
               

               
Cow position:
               
chr21:25800203-25800612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
180, 35
               

               
Conread position:
               
517-938
               

               
Cow position:
               
chr21:3253954-3254377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 110
               

               
Conread position:
               
519-901
               

               
Cow position:
               
chr21:395667-396058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
520-845
               

               
Cow position:
               
chr21:22718989-22718656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
50, 208
               

               
Conread position:
               
521-687
               

               
Cow position:
               
chr21:28029190-28029365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
521-833
               

               
Cow position:
               
chr21:16166840-16166524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
522-932
               

               
Cow position:
               
chr21:34237189-34237595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 24
               

               
Conread position:
               
522-938
               

               
Cow position:
               
chr21:44754986-44754564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
35, 170
               

               
Conread position:
               
524-788
               

               
Cow position:
               
chr21:40058602-40058871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 119
               

               
Conread position:
               
524-844
               

               
Cow position:
               
chr21:24130877-24131196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
524-850
               

               
Cow position:
               
chr21:81866-82200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 209
               

               
Conread position:
               
524-850
               

               
Cow position:
               
chr21:34391174-34390842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 107
               

               
Conread position:
               
524-850
               

               
Cow position:
               
chr21:42348882-42348562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
49, 222
               

               
Conread position:
               
524-850
               

               
Cow position:
               
chr21:42540424-42540089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
48, 64
               

               
Conread position:
               
524-863
               

               
Cow position:
               
chr21:44515070-44515411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
47, 83
               

               
Conread position:
               
524-889
               

               
Cow position:
               
chr21:27521529-27521163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
95, 47
               

               
Conread position:
               
524-930
               

               
Cow position:
               
chr21:23801325-23800911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 38
               

               
Conread position:
               
524-934
               

               
Cow position:
               
chr21:38900569-38901003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
437
               

               
Alignm identity:
               
319
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 224
               

               
Conread position:
               
525-849
               

               
Cow position:
               
chr21:28512329-28512646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
47, 148
               

               
Conread position:
               
526-698
               

               
Cow position:
               
chr21:13256602-13256779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 117
               

               
Conread position:
               
526-781
               

               
Cow position:
               
chr21:2785980-2785719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
526-785
               

               
Cow position:
               
chr21:5137694-5137420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 120
               

               
Conread position:
               
526-800
               

               
Cow position:
               
chr21:24765082-24765364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
526-810
               

               
Cow position:
               
chr21:35061886-35062179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
47, 161
               

               
Conread position:
               
526-810
               

               
Cow position:
               
chr21:47802462-47802167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
526-815
               

               
Cow position:
               
chr21:13489441-13489743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 17
               

               
Conread position:
               
526-835
               

               
Cow position:
               
chr21:20262536-20262217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
46, 181
               

               
Conread position:
               
526-836
               

               
Cow position:
               
chr21:10118351-10118678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
46, 271
               

               
Conread position:
               
526-839
               

               
Cow position:
               
chr21:10727079-10727399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
46, 98
               

               
Conread position:
               
526-843
               

               
Cow position:
               
chr21:33235596-33235930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr21:5153415-5153749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
526-847
               

               
Cow position:
               
chr21:4267552-4267217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
38, 212
               

               
Conread position:
               
526-848
               

               
Cow position:
               
chr21:29002364-29002022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr21:17511574-17511911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 130
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr21:45915906-45915585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 114
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr21:937847-938153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 33
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr21:15584605-15584285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
76, 37
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr21:16696168-16696507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
79, 114
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr21:19196370-19196030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr21:47760575-47760902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
78, 151
               

               
Conread position:
               
526-884
               

               
Cow position:
               
chr21:37706611-37706243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 93
               

               
Conread position:
               
526-888
               

               
Cow position:
               
chr21:20160482-20160852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr21:30231905-30231522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
37, 223
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr21:14464375-14464761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr21:30607287-30606918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
46, 16
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr21:42384303-42384686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr21:47764314-47763941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 369
               

               
Conread position:
               
526-892
               

               
Cow position:
               
chr21:6051304-6051683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 122
               

               
Conread position:
               
526-892
               

               
Cow position:
               
chr21:41974581-41974198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 306
               

               
Conread position:
               
526-893
               

               
Cow position:
               
chr21:19258624-19259000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
526-894
               

               
Cow position:
               
chr21:39401398-39401763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
83, 39
               

               
Conread position:
               
526-913
               

               
Cow position:
               
chr21:42414304-42413897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 125
               

               
Conread position:
               
526-916
               

               
Cow position:
               
chr21:9416040-9416451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 376
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr21:4276796-4276378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
33, 170
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr21:8206588-8207001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr21:33947446-33947030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
47, 33
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr21:34739647-34740070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 38
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr21:45355634-45356059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 118
               

               
Conread position:
               
527-723
               

               
Cow position:
               
chr21:5425780-5425977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 30
               

               
Conread position:
               
527-835
               

               
Cow position:
               
chr21:36756406-36756717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
527-892
               

               
Cow position:
               
chr21:13585259-13584881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
43, 32
               

               
Conread position:
               
527-937
               

               
Cow position:
               
chr21:23586675-23587115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 360
               

               
Conread position:
               
527-938
               

               
Cow position:
               
chr21:31662259-31662692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 421
               

               
Conread position:
               
527-938
               

               
Cow position:
               
chr21:38120906-38121323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
428
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
45, 104
               

               
Conread position:
               
528-849
               

               
Cow position:
               
chr21:11645169-11644834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
44, 116
               

               
Conread position:
               
528-849
               

               
Cow position:
               
chr21:16188000-16187675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 32
               

               
Conread position:
               
528-889
               

               
Cow position:
               
chr21:4282068-4281703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 104
               

               
Conread position:
               
528-938
               

               
Cow position:
               
chr21:46242439-46242015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 31
               

               
Conread position:
               
529-734
               

               
Cow position:
               
chr21:20910290-20910084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
529-771
               

               
Cow position:
               
chr21:31676299-31676548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
43, 111
               

               
Conread position:
               
529-840
               

               
Cow position:
               
chr21:18845214-18844889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
46, 60
               

               
Conread position:
               
529-851
               

               
Cow position:
               
chr21:4998684-4998361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
75, 110
               

               
Conread position:
               
529-889
               

               
Cow position:
               
chr21:10005083-10004709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
79, 117
               

               
Conread position:
               
529-889
               

               
Cow position:
               
chr21:29484785-29485155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
43, 30
               

               
Conread position:
               
529-938
               

               
Cow position:
               
chr21:3236333-3236747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
195, 74
               

               
Conread position:
               
530-717
               

               
Cow position:
               
chr21:9303959-9303769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
42, 110
               

               
Conread position:
               
530-905
               

               
Cow position:
               
chr21:17455187-17455578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
48, 37
               

               
Conread position:
               
531-687
               

               
Cow position:
               
chr21:20162338-20162502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
41, 62
               

               
Conread position:
               
531-703
               

               
Cow position:
               
chr21:393824-394005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
531-718
               

               
Cow position:
               
chr21:11706948-11706750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
41, 28
               

               
Conread position:
               
531-730
               

               
Cow position:
               
chr21:23478916-23478709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
44, 113
               

               
Conread position:
               
531-889
               

               
Cow position:
               
chr21:3818019-3818385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
531-889
               

               
Cow position:
               
chr21:28734109-28733736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
531-892
               

               
Cow position:
               
chr21:3585553-3585189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 15
               

               
Conread position:
               
532-801
               

               
Cow position:
               
chr21:21077133-21077409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
24, 69
               

               
Conread position:
               
533-730
               

               
Cow position:
               
chr21:5596951-5597158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
42, 146
               

               
Conread position:
               
533-753
               

               
Cow position:
               
chr21:18935566-18935792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
72, 33
               

               
Conread position:
               
533-788
               

               
Cow position:
               
chr21:912162-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
37, 111
               

               
Conread position:
               
533-804
               

               
Cow position:
               
chr21:13897996-13898274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
89, 40
               

               
Conread position:
               
533-815
               

               
Cow position:
               
chr21:39888939-39888652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
34, 107
               

               
Conread position:
               
533-827
               

               
Cow position:
               
chr21:48262936-48263243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
39, 93
               

               
Conread position:
               
533-836
               

               
Cow position:
               
chr21:23150214-23149902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
35, 26
               

               
Conread position:
               
533-843
               

               
Cow position:
               
chr21:4080159-4080474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
75, 210
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr21:12366192-12366499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
39, 153
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr21:13048391-13048065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
34, 5
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr21:18568846-18568511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
30, 116
               

               
Conread position:
               
533-850
               

               
Cow position:
               
chr21:32237102-32237412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
42, 111
               

               
Conread position:
               
533-875
               

               
Cow position:
               
chr21:30990463-30990124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
533-875
               

               
Cow position:
               
chr21:41620924-41621288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
533-887
               

               
Cow position:
               
chr21:18289466-18289833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
533-889
               

               
Cow position:
               
chr21:14760385-14760742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
36, 84
               

               
Conread position:
               
533-889
               

               
Cow position:
               
chr21:44252021-44251666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
39, 77
               

               
Conread position:
               
533-890
               

               
Cow position:
               
chr21:44671558-44671922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
37, 180
               

               
Conread position:
               
533-892
               

               
Cow position:
               
chr21:46849318-46848948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
39, 117
               

               
Conread position:
               
533-938
               

               
Cow position:
               
chr21:27863714-27863275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
534-731
               

               
Cow position:
               
chr21:24714459-24714666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
534-731
               

               
Cow position:
               
chr21:48484635-48484438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
74, 37
               

               
Conread position:
               
534-771
               

               
Cow position:
               
chr21:42913940-42913694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
534-815
               

               
Cow position:
               
chr21:24222732-24222440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
534-889
               

               
Cow position:
               
chr21:10151601-10151982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
534-889
               

               
Cow position:
               
chr21:28993820-28993454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
38, 171
               

               
Conread position:
               
534-892
               

               
Cow position:
               
chr21:1591357-1591726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
534-910
               

               
Cow position:
               
chr21:24858117-24858513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
38, 196
               

               
Conread position:
               
534-936
               

               
Cow position:
               
chr21:33997416-33997008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 106
               

               
Conread position:
               
534-944
               

               
Cow position:
               
chr21:34565407-34564984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
41, 165
               

               
Conread position:
               
535-814
               

               
Cow position:
               
chr21:12961092-12960804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
70, 24
               

               
Conread position:
               
535-822
               

               
Cow position:
               
chr21:3381274-3380974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
535-842
               

               
Cow position:
               
chr21:5636914-5636595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
38, 94
               

               
Conread position:
               
535-844
               

               
Cow position:
               
chr21:3763930-3763615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
535-850
               

               
Cow position:
               
chr21:13738378-13738686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
72, 36
               

               
Conread position:
               
535-850
               

               
Cow position:
               
chr21:33210005-33210321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
37, 193
               

               
Conread position:
               
535-889
               

               
Cow position:
               
chr21:36795409-36795780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
28, 112
               

               
Conread position:
               
536-892
               

               
Cow position:
               
chr21:5898591-5898223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 114
               

               
Conread position:
               
536-935
               

               
Cow position:
               
chr21:35996980-35997394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
27, 111
               

               
Conread position:
               
536-937
               

               
Cow position:
               
chr21:32574541-32574945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 64
               

               
Conread position:
               
536-938
               

               
Cow position:
               
chr21:18942021-18941609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
36, 172
               

               
Conread position:
               
537-813
               

               
Cow position:
               
chr21:37282118-37282397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
38, 107
               

               
Conread position:
               
537-938
               

               
Cow position:
               
chr21:25286318-25286739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
538-771
               

               
Cow position:
               
chr21:18494776-18495020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
32, 109
               

               
Conread position:
               
538-890
               

               
Cow position:
               
chr21:13365151-13365520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 71
               

               
Conread position:
               
539-814
               

               
Cow position:
               
chr21:28443569-28443283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
5, 200
               

               
Conread position:
               
539-890
               

               
Cow position:
               
chr21:45473947-45473581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
24, 106
               

               
Conread position:
               
539-936
               

               
Cow position:
               
chr21:33727651-33727238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
5, 94
               

               
Conread position:
               
539-938
               

               
Cow position:
               
chr21:22353419-22353012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
38, 72
               

               
Conread position:
               
540-850
               

               
Cow position:
               
chr21:33263660-33263977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
23, 105
               

               
Conread position:
               
543-889
               

               
Cow position:
               
chr21:2927388-2927028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 27
               

               
Conread position:
               
544-760
               

               
Cow position:
               
chr21:37361654-37361436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
19, 68
               

               
Conread position:
               
545-816
               

               
Cow position:
               
chr21:3813666-3813385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 99
               

               
Conread position:
               
545-889
               

               
Cow position:
               
chr21:28989433-28989790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
63, 17
               

               
Conread position:
               
546-832
               

               
Cow position:
               
chr21:46829451-46829157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
17, 86
               

               
Conread position:
               
546-845
               

               
Cow position:
               
chr21:13488337-13488655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 230
               

               
Conread position:
               
546-927
               

               
Cow position:
               
chr21:15911218-15911614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 83
               

               
Conread position:
               
554-816
               

               
Cow position:
               
chr21:9848168-9847912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
555-889
               

               
Cow position:
               
chr21:32339910-32339563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 62
               

               
Conread position:
               
555-892
               

               
Cow position:
               
chr21:18790729-18790386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
17, 85
               

               
Conread position:
               
556-889
               

               
Cow position:
               
chr21:21169667-21169319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
16, 64
               

               
Conread position:
               
560-938
               

               
Cow position:
               
chr21:10823387-10823784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
45, 193
               

               
Conread position:
               
560-938
               

               
Cow position:
               
chr21:44213957-44214355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
50, 231
               

               
Conread position:
               
566-850
               

               
Cow position:
               
chr21:18800689-18800401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 157
               

               
Conread position:
               
566-938
               

               
Cow position:
               
chr21:13754642-13755006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
44, 27
               

               
Conread position:
               
567-850
               

               
Cow position:
               
chr21:32297670-32297386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
38, 79
               

               
Conread position:
               
571-787
               

               
Cow position:
               
chr21:36793737-36793964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 71
               

               
Conread position:
               
571-889
               

               
Cow position:
               
chr21:7582065-7581728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
571-891
               

               
Cow position:
               
chr21:10633796-10633462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
574-850
               

               
Cow position:
               
chr21:27624560-27624831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
70, 13
               

               
Conread position:
               
574-889
               

               
Cow position:
               
chr21:24642366-24642689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
15, 42
               

               
Conread position:
               
575-889
               

               
Cow position:
               
chr21:26244780-26245091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
48, 33
               

               
Conread position:
               
575-937
               

               
Cow position:
               
chr21:46607735-46607369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 65
               

               
Conread position:
               
582-815
               

               
Cow position:
               
chr21:6102404-6102164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
23, 64
               

               
Conread position:
               
584-850
               

               
Cow position:
               
chr21:35354395-35354664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
13, 32
               

               
Conread position:
               
584-889
               

               
Cow position:
               
chr21:42007602-42007285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
34, 21
               

               
Conread position:
               
585-889
               

               
Cow position:
               
chr21:957526-957847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
588-892
               

               
Cow position:
               
chr21:11359899-11360205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
599-789
               

               
Cow position:
               
chr21:4568163-4568356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
125, 38
               

               
Conread position:
               
603-938
               

               
Cow position:
               
chr21:12301622-12301286 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 55
               

               
Conread position:
               
604-845
               

               
Cow position:
               
chr21:12462088-12461839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
10, 34
               

               
Conread position:
               
604-889
               

               
Cow position:
               
chr21:29978880-29978583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
604-923
               

               
Cow position:
               
chr21:46921-47249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
118, 37
               

               
Conread position:
               
604-938
               

               
Cow position:
               
chr21:21181059-21181402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
604-938
               

               
Cow position:
               
chr21:46552217-46551881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
72, 23
               

               
Conread position:
               
605-845
               

               
Cow position:
               
chr21:36789677-36789923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
39, 67
               

               
Conread position:
               
607-898
               

               
Cow position:
               
chr21:25629026-25628725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 34
               

               
Conread position:
               
610-890
               

               
Cow position:
               
chr21:28924005-28924287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
66, 27
               

               
Conread position:
               
613-938
               

               
Cow position:
               
chr21:10673023-10673354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 24
               

               
Conread position:
               
614-848
               

               
Cow position:
               
chr21:10561692-10561452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
7, 24
               

               
Conread position:
               
617-909
               

               
Cow position:
               
chr21:42022186-42022475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
144, 20
               

               
Conread position:
               
619-940
               

               
Cow position:
               
chr21:20418787-20418460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
625-905
               

               
Cow position:
               
chr21:22121426-22121697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
99, 12
               

               
Conread position:
               
629-889
               

               
Cow position:
               
chr21:30835270-30835540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
41, 17
               

               
Conread position:
               
639-938
               

               
Cow position:
               
chr21:9940278-9939964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 246
               

               
Conread position:
               
643-845
               

               
Cow position:
               
chr21:40432368-40432573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
8, 117
               

               
Conread position:
               
643-893
               

               
Cow position:
               
chr21:22210324-22210066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
33, 42
               

               
Conread position:
               
643-938
               

               
Cow position:
               
chr21:37014483-37014181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 107
               

               
Conread position:
               
645-944
               

               
Cow position:
               
chr21:31661927-31662234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
79, 72
               

               
Conread position:
               
647-847
               

               
Cow position:
               
chr21:33360110-33359912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
29, 116
               

               
Conread position:
               
647-889
               

               
Cow position:
               
chr21:36909858-36910108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
650-938
               

               
Cow position:
               
chr21:33414158-33413853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
98, 126
               

               
Conread position:
               
651-893
               

               
Cow position:
               
chr21:1511219-1511470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
73, 173
               

               
Conread position:
               
651-937
               

               
Cow position:
               
chr21:15544290-15543996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
92, 139
               

               
Conread position:
               
663-937
               

               
Cow position:
               
chr21:47715604-47715321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
671-889
               

               
Cow position:
               
chr21:28919576-28919351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
673-940
               

               
Cow position:
               
chr21:26753445-26753715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
24, 77
               

               
Conread position:
               
686-889
               

               
Cow position:
               
chr21:10538287-10538078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
72, 41
               

               
Conread position:
               
691-920
               

               
Cow position:
               
chr21:13395566-13395811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
52, 36
               

               
Conread position:
               
695-938
               

               
Cow position:
               
chr21:42209659-42209401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
29, 78
               

               
Conread position:
               
701-943
               

               
Cow position:
               
chr21:37235363-37235616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
713-941
               

               
Cow position:
               
chr21:6387992-6388221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 9
               

               
Conread position:
               
754-935
               

               
Cow position:
               
chr21:18135836-18135651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
769-938
               

               
Cow position:
               
chr21:26147130-26147303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
59, 18
               
Show alignments to all cow chromosomes.