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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8024N04.3
        

               
Conread position:
               
21-344
               

               
Cow position:
               
chr9:53603644-53603330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
227, 124
               

               
Conread position:
               
67-307
               

               
Cow position:
               
chr9:3744210-3743973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
198, 16
               

               
Conread position:
               
89-343
               

               
Cow position:
               
chr9:42475955-42475702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
176, 41
               

               
Conread position:
               
95-343
               

               
Cow position:
               
chr9:52001972-52001730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
171, 10
               

               
Conread position:
               
99-337
               

               
Cow position:
               
chr9:3388682-3388452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
166, 6
               

               
Conread position:
               
99-377
               

               
Cow position:
               
chr9:59196998-59197266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
167, 6
               

               
Conread position:
               
110-344
               

               
Cow position:
               
chr9:7104082-7103849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
155, 20
               

               
Conread position:
               
111-349
               

               
Cow position:
               
chr9:9623088-9623321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
112-343
               

               
Cow position:
               
chr9:6707767-6707537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
153, 18
               

               
Conread position:
               
112-353
               

               
Cow position:
               
chr9:20988446-20988687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
5, 33
               

               
Conread position:
               
113-264
               

               
Cow position:
               
chr9:9872091-9872240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-335
               

               
Cow position:
               
chr9:55796953-55796733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-337
               

               
Cow position:
               
chr9:37097756-37097978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
28, 18
               

               
Conread position:
               
113-338
               

               
Cow position:
               
chr9:58747668-58747447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr9:10678777-10678553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 30
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr9:30439548-30439771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
20, 15
               

               
Conread position:
               
113-339
               

               
Cow position:
               
chr9:50900484-50900267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr9:46670083-46670305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-340
               

               
Cow position:
               
chr9:47045099-47045325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr9:9210295-9210522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-341
               

               
Cow position:
               
chr9:54459350-54459123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:174621-174393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:216859-216630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:2495589-2495360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
128, 18
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:3052417-3052646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:3222623-3222844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:4673207-4673436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:5430618-5430847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:5452488-5452259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:7830751-7830525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:16639426-16639655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:18243831-18243602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:18830890-18831113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:28681352-28681581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:33843475-33843704 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:35565387-35565158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:35624466-35624695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:37253556-37253785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:41312889-41312660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:48795140-48794911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:50326848-50327077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:52526303-52526532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:55758594-55758823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-343
               

               
Cow position:
               
chr9:59496031-59495802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:1062544-1062314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:13187356-13187586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:13620845-13620615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:17017906-17018136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:37907999-37908229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:40316288-40316516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:44202928-44202698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:45792000-45792230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:47883131-47882907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:58615544-58615311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-344
               

               
Cow position:
               
chr9:62818069-62817839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-350
               

               
Cow position:
               
chr9:62401169-62400934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
113-353
               

               
Cow position:
               
chr9:30401434-30401671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 20
               

               
Conread position:
               
113-364
               

               
Cow position:
               
chr9:37168620-37168867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
153, 15
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:8282118-8281861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:13312715-13312966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:24423674-24423931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:28785496-28785751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:34238607-34238350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:36829900-36829643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:37174253-37173996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:39303401-39303144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-374
               

               
Cow position:
               
chr9:46667646-46667389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-375
               

               
Cow position:
               
chr9:1099746-1100004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr9:3411742-3411480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 27
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr9:6764620-6764350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr9:43302449-43302185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
233, 17
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr9:54413457-54413191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
113-377
               

               
Cow position:
               
chr9:64562361-64562616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
155, 17
               

               
Conread position:
               
113-389
               

               
Cow position:
               
chr9:23421738-23422009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
18, 27
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr9:1071132-1070861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
113-392
               

               
Cow position:
               
chr9:17061206-17060935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
152, 17
               

               
Conread position:
               
114-307
               

               
Cow position:
               
chr9:9199246-9199435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
152, 29
               

               
Conread position:
               
114-338
               

               
Cow position:
               
chr9:33068347-33068121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
112, 29
               

               
Conread position:
               
114-344
               

               
Cow position:
               
chr9:3806744-3806976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
114-353
               

               
Cow position:
               
chr9:18007750-18007987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
114-364
               

               
Cow position:
               
chr9:5533782-5533536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 73
               

               
Conread position:
               
114-364
               

               
Cow position:
               
chr9:25974833-25974588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
27, 14
               

               
Conread position:
               
115-270
               

               
Cow position:
               
chr9:43856384-43856231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
16, 29
               

               
Conread position:
               
115-322
               

               
Cow position:
               
chr9:10672181-10671980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
115-334
               

               
Cow position:
               
chr9:34945860-34945642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
41, 29
               

               
Conread position:
               
115-335
               

               
Cow position:
               
chr9:51159998-51160215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
153, 29
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr9:34567798-34568020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
18, 29
               

               
Conread position:
               
115-339
               

               
Cow position:
               
chr9:59760781-59761008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 134
               

               
Conread position:
               
115-343
               

               
Cow position:
               
chr9:19079019-19079245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
151, 24
               

               
Conread position:
               
115-373
               

               
Cow position:
               
chr9:1640409-1640665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
73, 21
               

               
Conread position:
               
115-387
               

               
Cow position:
               
chr9:21461616-21461888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
13, 31
               

               
Conread position:
               
116-434
               

               
Cow position:
               
chr9:23028875-23028564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
15, 24
               

               
Conread position:
               
118-338
               

               
Cow position:
               
chr9:29300862-29300646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
151, 25
               

               
Conread position:
               
119-283
               

               
Cow position:
               
chr9:8601731-8601570 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
13, 26
               

               
Conread position:
               
119-343
               

               
Cow position:
               
chr9:18109857-18110080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
22, 51
               

               
Conread position:
               
121-338
               

               
Cow position:
               
chr9:1938875-1938666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
10, 19
               

               
Conread position:
               
122-339
               

               
Cow position:
               
chr9:36088693-36088903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
11, 22
               

               
Conread position:
               
122-344
               

               
Cow position:
               
chr9:7005900-7006122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
143, 133
               

               
Conread position:
               
122-376
               

               
Cow position:
               
chr9:3932951-3932700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
146, 17
               

               
Conread position:
               
122-377
               

               
Cow position:
               
chr9:30675234-30675493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
143, 62
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr9:3075302-3075515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
145, 20
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr9:18071644-18071863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-344
               

               
Cow position:
               
chr9:28774105-28773888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-361
               

               
Cow position:
               
chr9:9515833-9516063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
8, 17
               

               
Conread position:
               
123-389
               

               
Cow position:
               
chr9:29338069-29338325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 15
               

               
Conread position:
               
125-344
               

               
Cow position:
               
chr9:10326394-10326615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr9:1740397-1740141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
140, 177
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr9:22803489-22803233 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
125-377
               

               
Cow position:
               
chr9:24918126-24917869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
126-342
               

               
Cow position:
               
chr9:2857006-2857223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
126-344
               

               
Cow position:
               
chr9:58674746-58674527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
15, 127
               

               
Conread position:
               
127-343
               

               
Cow position:
               
chr9:34690366-34690153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
138, 146
               

               
Conread position:
               
127-374
               

               
Cow position:
               
chr9:35592978-35592731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
58, 221
               

               
Conread position:
               
132-364
               

               
Cow position:
               
chr9:13220705-13220937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
32, 203
               

               
Conread position:
               
132-372
               

               
Cow position:
               
chr9:15981871-15982116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 47
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr9:7058877-7058669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
129, 39
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr9:30737343-30737134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
41, 78
               

               
Conread position:
               
136-344
               

               
Cow position:
               
chr9:47171226-47171435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
139-342
               

               
Cow position:
               
chr9:20409544-20409747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
139-342
               

               
Cow position:
               
chr9:34917795-34917993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
127, 25
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr9:1307176-1306971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr9:2681664-2681869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-343
               

               
Cow position:
               
chr9:22570280-22570485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:1838131-1838332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 31
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:2873650-2873857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:3061762-3061969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:4940323-4940118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
126, 161
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:5414876-5414669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:6252739-6252946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:9016250-9016456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:16178760-16178966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:22755748-22755547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
98, 137
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:34059457-34059251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 25
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:37158434-37158230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:44168768-44168973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
139-344
               

               
Cow position:
               
chr9:47005909-47006115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
70, 111
               

               
Conread position:
               
139-353
               

               
Cow position:
               
chr9:13181093-13181302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
127, 31
               

               
Conread position:
               
139-372
               

               
Cow position:
               
chr9:5007149-5007379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
207, 113
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr9:772072-771839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
126, 207
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr9:873828-874062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 208
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr9:29193394-29193163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
102, 112
               

               
Conread position:
               
139-374
               

               
Cow position:
               
chr9:46627487-46627720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
126, 207
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:5627995-5628237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:10857209-10857451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
129, 61
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:17302802-17302561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 84
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:21412473-21412722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:27781736-27781493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:29106051-29106294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
102, 110
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:32972543-32972785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
126, 63
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:42868697-42868453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
139-377
               

               
Cow position:
               
chr9:59479681-59479438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
139-389
               

               
Cow position:
               
chr9:19156116-19155865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
140-322
               

               
Cow position:
               
chr9:22438676-22438856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
140-327
               

               
Cow position:
               
chr9:44821062-44821249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
53, 35
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr9:17993173-17992978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
140-338
               

               
Cow position:
               
chr9:20900151-20900347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
126, 115
               

               
Conread position:
               
140-339
               

               
Cow position:
               
chr9:6329230-6329032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
61, 34
               

               
Conread position:
               
140-342
               

               
Cow position:
               
chr9:54997050-54997253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr9:33845195-33845398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
64, 43
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr9:42696148-42696353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr9:42902258-42902059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
126, 60
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr9:62669376-62669173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
127, 44
               

               
Conread position:
               
140-343
               

               
Cow position:
               
chr9:62764133-62763927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
41, 142
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr9:5030753-5030549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
126, 30
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr9:47263216-47263420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
48, 44
               

               
Conread position:
               
140-344
               

               
Cow position:
               
chr9:49981678-49981878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 103
               

               
Conread position:
               
140-361
               

               
Cow position:
               
chr9:2222842-2223064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
126, 40
               

               
Conread position:
               
140-364
               

               
Cow position:
               
chr9:9958007-9957784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
126, 96
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr9:24873778-24873550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
126, 96
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr9:28822269-28822037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
126, 73
               

               
Conread position:
               
140-377
               

               
Cow position:
               
chr9:28657880-28657638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
140-383
               

               
Cow position:
               
chr9:1998123-1997874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
101, 67
               

               
Conread position:
               
140-389
               

               
Cow position:
               
chr9:54995812-54996051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
126, 67
               

               
Conread position:
               
140-415
               

               
Cow position:
               
chr9:36621898-36622174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
126, 163
               

               
Conread position:
               
141-318
               

               
Cow position:
               
chr9:51692442-51692261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
141-342
               

               
Cow position:
               
chr9:44518519-44518320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
141-343
               

               
Cow position:
               
chr9:2834822-2834620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
124, 112
               

               
Conread position:
               
141-344
               

               
Cow position:
               
chr9:2548517-2548316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
141-353
               

               
Cow position:
               
chr9:61739873-61739662 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
58, 89
               

               
Conread position:
               
141-362
               

               
Cow position:
               
chr9:25547976-25547756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
125, 207
               

               
Conread position:
               
142-330
               

               
Cow position:
               
chr9:43538465-43538277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
142-378
               

               
Cow position:
               
chr9:9577982-9578214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
143-338
               

               
Cow position:
               
chr9:50775879-50776074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
122, 41
               

               
Conread position:
               
143-339
               

               
Cow position:
               
chr9:4862401-4862198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
143-377
               

               
Cow position:
               
chr9:53530882-53531118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
47, 41
               

               
Conread position:
               
144-343
               

               
Cow position:
               
chr9:45383407-45383607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
145-328
               

               
Cow position:
               
chr9:5839951-5839770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
123, 14
               

               
Conread position:
               
145-339
               

               
Cow position:
               
chr9:27050326-27050525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
145-342
               

               
Cow position:
               
chr9:40413-40219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
54, 39
               

               
Conread position:
               
145-376
               

               
Cow position:
               
chr9:46525037-46524806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
121, 183
               

               
Conread position:
               
146-354
               

               
Cow position:
               
chr9:10760350-10760557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
42, 38
               

               
Conread position:
               
148-330
               

               
Cow position:
               
chr9:33478076-33478259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
149-343
               

               
Cow position:
               
chr9:49073877-49073682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
149-361
               

               
Cow position:
               
chr9:20317607-20317821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
12, 176
               

               
Conread position:
               
150-300
               

               
Cow position:
               
chr9:64106353-64106203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
80, 91
               

               
Conread position:
               
150-339
               

               
Cow position:
               
chr9:17870693-17870881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
150-342
               

               
Cow position:
               
chr9:33659434-33659240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
25, 13
               

               
Conread position:
               
150-366
               

               
Cow position:
               
chr9:31114842-31115055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
150-371
               

               
Cow position:
               
chr9:12285521-12285295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
91, 99
               

               
Conread position:
               
150-389
               

               
Cow position:
               
chr9:17306995-17307225 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
118, 82
               

               
Conread position:
               
151-376
               

               
Cow position:
               
chr9:52408134-52407907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
152-344
               

               
Cow position:
               
chr9:20941666-20941859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
22, 181
               

               
Conread position:
               
152-352
               

               
Cow position:
               
chr9:37194235-37194037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
15, 153
               

               
Conread position:
               
153-338
               

               
Cow position:
               
chr9:1856658-1856472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 17
               

               
Conread position:
               
154-343
               

               
Cow position:
               
chr9:26576886-26577072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
154-377
               

               
Cow position:
               
chr9:2173726-2173952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
87, 69
               

               
Conread position:
               
155-311
               

               
Cow position:
               
chr9:12260173-12260016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-337
               

               
Cow position:
               
chr9:51556159-51556342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-338
               

               
Cow position:
               
chr9:43670046-43670230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-339
               

               
Cow position:
               
chr9:53776885-53777068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 34
               

               
Conread position:
               
155-342
               

               
Cow position:
               
chr9:42053338-42053150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:2208477-2208291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
111, 62
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:4647451-4647263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
33, 29
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:6304627-6304817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:9611695-9611506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:20577956-20578144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
81, 23
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:26325938-26326126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 62
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:31417324-31417135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:33056974-33057163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:43494240-43494429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:43496326-43496515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:50840624-50840813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:56177066-56177255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-343
               

               
Cow position:
               
chr9:63563612-63563801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:6365568-6365758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:8387012-8387202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:10802865-10803054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:12161782-12161978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
71, 141
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:28025011-28025202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
155-344
               

               
Cow position:
               
chr9:38633972-38634161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 14
               

               
Conread position:
               
155-345
               

               
Cow position:
               
chr9:19545702-19545893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
155-351
               

               
Cow position:
               
chr9:11478066-11477871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
155-372
               

               
Cow position:
               
chr9:40143159-40142943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
113, 52
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr9:12378640-12378854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr9:30186898-30187114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 59
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr9:60409594-60409811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
110, 191
               

               
Conread position:
               
155-374
               

               
Cow position:
               
chr9:64012037-64011821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
110, 191
               

               
Conread position:
               
155-375
               

               
Cow position:
               
chr9:55031697-55031921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
110, 27
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:1991362-1991135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:4552988-4553212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
111, 148
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:18506632-18506410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
110, 177
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:22655990-22656217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:27038305-27038532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
83, 94
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:42570407-42570634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:51178477-51178249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
155-377
               

               
Cow position:
               
chr9:59539101-59539320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
191, 111
               

               
Conread position:
               
155-389
               

               
Cow position:
               
chr9:34900669-34900900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
155-815
               

               
Cow position:
               
chr9:27443286-27442625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
663
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
110, 177
               

               
Conread position:
               
156-336
               

               
Cow position:
               
chr9:26055223-26055404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
89, 24
               

               
Conread position:
               
156-336
               

               
Cow position:
               
chr9:50689093-50689271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
110, 8
               

               
Conread position:
               
156-339
               

               
Cow position:
               
chr9:33999424-33999609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
156-342
               

               
Cow position:
               
chr9:9818060-9817870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
110, 159
               

               
Conread position:
               
156-343
               

               
Cow position:
               
chr9:382697-382513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
109, 44
               

               
Conread position:
               
156-344
               

               
Cow position:
               
chr9:17633680-17633869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr9:36844747-36844552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
156-349
               

               
Cow position:
               
chr9:61845698-61845891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
110, 177
               

               
Conread position:
               
156-353
               

               
Cow position:
               
chr9:1519779-1519975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
175, 85
               

               
Conread position:
               
156-373
               

               
Cow position:
               
chr9:5887196-5886985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
108, 117
               

               
Conread position:
               
157-303
               

               
Cow position:
               
chr9:39591096-39591243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
157-339
               

               
Cow position:
               
chr9:64054640-64054822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
109, 45
               

               
Conread position:
               
157-353
               

               
Cow position:
               
chr9:1983565-1983761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
87, 92
               

               
Conread position:
               
157-377
               

               
Cow position:
               
chr9:31810771-31810996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
158-398
               

               
Cow position:
               
chr9:22361956-22361718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
108, 78
               

               
Conread position:
               
159-340
               

               
Cow position:
               
chr9:34554043-34553861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
159-342
               

               
Cow position:
               
chr9:44580024-44579841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
29, 25
               

               
Conread position:
               
159-345
               

               
Cow position:
               
chr9:16981873-16981686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
159-377
               

               
Cow position:
               
chr9:2200788-2201010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
159-389
               

               
Cow position:
               
chr9:825707-825482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
107, 12
               

               
Conread position:
               
160-338
               

               
Cow position:
               
chr9:23044082-23043903 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
39, 80
               

               
Conread position:
               
160-342
               

               
Cow position:
               
chr9:4305889-4305705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
71, 53
               

               
Conread position:
               
160-343
               

               
Cow position:
               
chr9:9491754-9491576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chr9:3756642-3756457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chr9:10665099-10665285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
11, 48
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chr9:13492942-13493120 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
83, 89
               

               
Conread position:
               
160-344
               

               
Cow position:
               
chr9:28702646-28702832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
28, 24
               

               
Conread position:
               
160-345
               

               
Cow position:
               
chr9:8951852-8951666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
105, 11
               

               
Conread position:
               
160-346
               

               
Cow position:
               
chr9:9633855-9634042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
31, 24
               

               
Conread position:
               
163-372
               

               
Cow position:
               
chr9:21841379-21841171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
181, 54
               

               
Conread position:
               
164-372
               

               
Cow position:
               
chr9:59454696-59454483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
165-363
               

               
Cow position:
               
chr9:1850448-1850252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
166-337
               

               
Cow position:
               
chr9:11410404-11410577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
166-356
               

               
Cow position:
               
chr9:4127755-4127569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
16, 139
               

               
Conread position:
               
167-349
               

               
Cow position:
               
chr9:34688675-34688851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
99, 51
               

               
Conread position:
               
167-392
               

               
Cow position:
               
chr9:30139412-30139190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
74, 82
               

               
Conread position:
               
167-398
               

               
Cow position:
               
chr9:24996565-24996794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
99, 142
               

               
Conread position:
               
170-362
               

               
Cow position:
               
chr9:58133396-58133202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
171-338
               

               
Cow position:
               
chr9:5328159-5327992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
95, 116
               

               
Conread position:
               
171-339
               

               
Cow position:
               
chr9:13472367-13472200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
95, 41
               

               
Conread position:
               
171-344
               

               
Cow position:
               
chr9:14045873-14046047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
171-367
               

               
Cow position:
               
chr9:22442688-22442886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
25, 31
               

               
Conread position:
               
172-344
               

               
Cow position:
               
chr9:9442659-9442832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
174-341
               

               
Cow position:
               
chr9:17987552-17987384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
181-389
               

               
Cow position:
               
chr9:20959013-20959219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
85, 161
               

               
Conread position:
               
182-389
               

               
Cow position:
               
chr9:24427695-24427906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
66, 75
               

               
Conread position:
               
184-343
               

               
Cow position:
               
chr9:3717584-3717744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
185-343
               

               
Cow position:
               
chr9:9094092-9093933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
186-344
               

               
Cow position:
               
chr9:30020925-30021083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
189-330
               

               
Cow position:
               
chr9:28356198-28356057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
76, 84
               

               
Conread position:
               
190-340
               

               
Cow position:
               
chr9:9357371-9357521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
190-344
               

               
Cow position:
               
chr9:12195230-12195075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 17
               

               
Conread position:
               
190-349
               

               
Cow position:
               
chr9:31078139-31078300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
190-389
               

               
Cow position:
               
chr9:44920486-44920688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
38, 160
               

               
Conread position:
               
191-377
               

               
Cow position:
               
chr9:60590018-60590204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
75, 118
               

               
Conread position:
               
193-374
               

               
Cow position:
               
chr9:49221037-49220858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
72, 153
               

               
Conread position:
               
194-342
               

               
Cow position:
               
chr9:44624137-44623987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
196-362
               

               
Cow position:
               
chr9:10634147-10634311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
70, 22
               

               
Conread position:
               
198-338
               

               
Cow position:
               
chr9:18139428-18139566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
7, 115
               

               
Conread position:
               
200-377
               

               
Cow position:
               
chr9:38346916-38346739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
201-344
               

               
Cow position:
               
chr9:28725837-28725981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 0
               

               
Conread position:
               
202-344
               

               
Cow position:
               
chr9:11156426-11156284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
79, 90
               

               
Conread position:
               
202-377
               

               
Cow position:
               
chr9:2618546-2618366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
355-506
               

               
Cow position:
               
chr9:28725846-28725996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
355-508
               

               
Cow position:
               
chr9:24873708-24873559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 11
               

               
Conread position:
               
440-921
               

               
Cow position:
               
chr9:15950772-15951275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
345
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
82, 210
               

               
Conread position:
               
447-803
               

               
Cow position:
               
chr9:30138498-30138143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
121, 20
               

               
Conread position:
               
481-813
               

               
Cow position:
               
chr9:52724880-52725219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
120, 64
               

               
Conread position:
               
481-943
               

               
Cow position:
               
chr9:19382660-19382190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
480
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
487-845
               

               
Cow position:
               
chr9:30402088-30402460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 38
               

               
Conread position:
               
491-761
               

               
Cow position:
               
chr9:27052003-27052284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
491-842
               

               
Cow position:
               
chr9:6089428-6089056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
31, 127
               

               
Conread position:
               
494-889
               

               
Cow position:
               
chr9:26434739-26435141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
63, 23
               

               
Conread position:
               
499-889
               

               
Cow position:
               
chr9:34374610-34375008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
502-845
               

               
Cow position:
               
chr9:5141390-5141037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
13, 24
               

               
Conread position:
               
503-804
               

               
Cow position:
               
chr9:29034718-29035029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
503-845
               

               
Cow position:
               
chr9:41317645-41318008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
22, 18
               

               
Conread position:
               
503-888
               

               
Cow position:
               
chr9:16300258-16300652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
69, 18
               

               
Conread position:
               
504-889
               

               
Cow position:
               
chr9:33681992-33681575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
104, 21
               

               
Conread position:
               
506-850
               

               
Cow position:
               
chr9:28726413-28726764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
8, 20
               

               
Conread position:
               
506-888
               

               
Cow position:
               
chr9:50080733-50081123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
11, 20
               

               
Conread position:
               
507-718
               

               
Cow position:
               
chr9:3924928-3924718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
61, 7
               

               
Conread position:
               
508-892
               

               
Cow position:
               
chr9:10308697-10309082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
509-871
               

               
Cow position:
               
chr9:8998665-8998293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
63, 8
               

               
Conread position:
               
511-846
               

               
Cow position:
               
chr9:5029825-5029473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
60, 131
               

               
Conread position:
               
516-674
               

               
Cow position:
               
chr9:54666207-54666045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 9
               

               
Conread position:
               
516-821
               

               
Cow position:
               
chr9:18162850-18163170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
48, 128
               

               
Conread position:
               
516-851
               

               
Cow position:
               
chr9:35167470-35167135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8.40779e-45
               

               
Alignm gaps (pig, cow):
               
42, 9
               

               
Conread position:
               
516-889
               

               
Cow position:
               
chr9:55074833-55075212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
53, 11
               

               
Conread position:
               
518-851
               

               
Cow position:
               
chr9:21459855-21460192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
54, 9
               

               
Conread position:
               
520-845
               

               
Cow position:
               
chr9:13994489-13994131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
52, 126
               

               
Conread position:
               
520-851
               

               
Cow position:
               
chr9:8937449-8937111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
51, 184
               

               
Conread position:
               
520-851
               

               
Cow position:
               
chr9:52407471-52407123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
41, 128
               

               
Conread position:
               
521-937
               

               
Cow position:
               
chr9:4861689-4861246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
85, 38
               

               
Conread position:
               
522-845
               

               
Cow position:
               
chr9:6397487-6397819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
52, 37
               

               
Conread position:
               
523-875
               

               
Cow position:
               
chr9:3070126-3070479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
40, 5
               

               
Conread position:
               
524-726
               

               
Cow position:
               
chr9:48343898-48343691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
524-730
               

               
Cow position:
               
chr9:49279748-49279559 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
196, 41
               

               
Conread position:
               
524-791
               

               
Cow position:
               
chr9:32812643-32812369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
81, 127
               

               
Conread position:
               
524-794
               

               
Cow position:
               
chr9:5621733-5622021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
524-824
               

               
Cow position:
               
chr9:1951973-1952283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 119
               

               
Conread position:
               
524-841
               

               
Cow position:
               
chr9:44831760-44832085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
80, 123
               

               
Conread position:
               
524-844
               

               
Cow position:
               
chr9:29184837-29185171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
48, 35
               

               
Conread position:
               
524-850
               

               
Cow position:
               
chr9:5510021-5509684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 206
               

               
Conread position:
               
524-888
               

               
Cow position:
               
chr9:33940904-33940523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
48, 120
               

               
Conread position:
               
524-889
               

               
Cow position:
               
chr9:56773376-56772992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
48, 186
               

               
Conread position:
               
524-889
               

               
Cow position:
               
chr9:62442578-62442206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
43, 57
               

               
Conread position:
               
524-893
               

               
Cow position:
               
chr9:46316491-46316859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
53, 118
               

               
Conread position:
               
524-936
               

               
Cow position:
               
chr9:43037780-43037352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
51, 207
               

               
Conread position:
               
525-844
               

               
Cow position:
               
chr9:5161773-5162084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
525-850
               

               
Cow position:
               
chr9:64091985-64091640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
9, 295
               

               
Conread position:
               
526-703
               

               
Cow position:
               
chr9:2034466-2034281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
42, 176
               

               
Conread position:
               
526-724
               

               
Cow position:
               
chr9:33388613-33388816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
526-729
               

               
Cow position:
               
chr9:51928999-51928780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
526-789
               

               
Cow position:
               
chr9:22227790-22228057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
37, 114
               

               
Conread position:
               
526-832
               

               
Cow position:
               
chr9:25958708-25958395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
526-835
               

               
Cow position:
               
chr9:4928924-4928602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
82, 266
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr9:7634563-7634236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-35
               

               
Alignm gaps (pig, cow):
               
26, 92
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr9:14974631-14974954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
46, 117
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr9:15805626-15805958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
46, 175
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr9:22656651-22656984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
39, 260
               

               
Conread position:
               
526-845
               

               
Cow position:
               
chr9:31077383-31077705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr9:5763335-5763671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
46, 296
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr9:34697001-34697339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
44, 117
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr9:34762558-34762890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr9:49764951-49764621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 158
               

               
Conread position:
               
526-850
               

               
Cow position:
               
chr9:52578238-52578578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
44, 184
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr9:4646038-4646366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
82, 36
               

               
Conread position:
               
526-851
               

               
Cow position:
               
chr9:31640023-31640366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
36, 128
               

               
Conread position:
               
526-881
               

               
Cow position:
               
chr9:36445916-36445543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
526-888
               

               
Cow position:
               
chr9:17410894-17411276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
82, 41
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:1520434-1520823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
37, 374
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:5327546-5327174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 39
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:6933777-6934157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
45, 176
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:9405760-9406137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 106
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:22696511-22696139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 114
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:26278882-26279253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
46, 25
               

               
Conread position:
               
526-889
               

               
Cow position:
               
chr9:54528810-54528430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
42, 182
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr9:5594795-5594418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
46, 126
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr9:20406931-20406571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
79, 204
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr9:44467054-44467424 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
47, 243
               

               
Conread position:
               
526-890
               

               
Cow position:
               
chr9:50076360-50075979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
39, 33
               

               
Conread position:
               
526-891
               

               
Cow position:
               
chr9:33093239-33092872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
46, 66
               

               
Conread position:
               
526-892
               

               
Cow position:
               
chr9:61997301-61997690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
5.99756e-43
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
526-893
               

               
Cow position:
               
chr9:8724095-8723706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
11, 191
               

               
Conread position:
               
526-900
               

               
Cow position:
               
chr9:62657087-62656705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
46, 114
               

               
Conread position:
               
526-921
               

               
Cow position:
               
chr9:43871267-43870852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 84
               

               
Conread position:
               
526-923
               

               
Cow position:
               
chr9:42445690-42446104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
526-925
               

               
Cow position:
               
chr9:18093369-18093762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 117
               

               
Conread position:
               
526-927
               

               
Cow position:
               
chr9:35375716-35375321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
44, 33
               

               
Conread position:
               
526-936
               

               
Cow position:
               
chr9:11102528-11102930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
39, 60
               

               
Conread position:
               
526-937
               

               
Cow position:
               
chr9:22318633-22318211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
434
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
46, 80
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr9:5226870-5227311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
444
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
46, 33
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr9:5433926-5433494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
436
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
82, 44
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr9:35101162-35100757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 118
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr9:41789573-41789151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
16, 25
               

               
Conread position:
               
526-938
               

               
Cow position:
               
chr9:54206037-54206457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
431
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
526-940
               

               
Cow position:
               
chr9:26404084-26403642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
526-941
               

               
Cow position:
               
chr9:14184970-14184535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
443
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
527-753
               

               
Cow position:
               
chr9:29825323-29825097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
81, 32
               

               
Conread position:
               
527-833
               

               
Cow position:
               
chr9:38692244-38692558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
527-850
               

               
Cow position:
               
chr9:5836458-5836109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
36, 104
               

               
Conread position:
               
527-875
               

               
Cow position:
               
chr9:31078792-31079150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
78, 11
               

               
Conread position:
               
527-889
               

               
Cow position:
               
chr9:40542407-40542052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
48, 16
               

               
Conread position:
               
527-938
               

               
Cow position:
               
chr9:8599897-8599474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 100
               

               
Conread position:
               
527-938
               

               
Cow position:
               
chr9:20091332-20090909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
528-850
               

               
Cow position:
               
chr9:20989161-20989498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
528-893
               

               
Cow position:
               
chr9:30477507-30477861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
170, 53
               

               
Conread position:
               
529-760
               

               
Cow position:
               
chr9:36067197-36066963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
529-789
               

               
Cow position:
               
chr9:36999769-37000039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
529-881
               

               
Cow position:
               
chr9:56253191-56252825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
529-938
               

               
Cow position:
               
chr9:10127378-10127799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
427
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
71, 296
               

               
Conread position:
               
531-756
               

               
Cow position:
               
chr9:36623162-36623385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
41, 105
               

               
Conread position:
               
531-767
               

               
Cow position:
               
chr9:1984232-1984480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
39, 78
               

               
Conread position:
               
531-821
               

               
Cow position:
               
chr9:58133734-58134031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
39, 28
               

               
Conread position:
               
531-838
               

               
Cow position:
               
chr9:9416117-9416423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
42, 109
               

               
Conread position:
               
531-889
               

               
Cow position:
               
chr9:55084007-55084385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 113
               

               
Conread position:
               
531-890
               

               
Cow position:
               
chr9:34901829-34902186 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
74, 14
               

               
Conread position:
               
531-940
               

               
Cow position:
               
chr9:39152397-39152814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
33, 73
               

               
Conread position:
               
531-942
               

               
Cow position:
               
chr9:11870496-11870072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
531-943
               

               
Cow position:
               
chr9:34310324-34309891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
440
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
44, 262
               

               
Conread position:
               
532-938
               

               
Cow position:
               
chr9:43912218-43911801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 141
               

               
Conread position:
               
533-713
               

               
Cow position:
               
chr9:33823379-33823201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
75, 26
               

               
Conread position:
               
533-752
               

               
Cow position:
               
chr9:58439494-58439719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
39, 26
               

               
Conread position:
               
533-788
               

               
Cow position:
               
chr9:23028080-23027827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
37, 26
               

               
Conread position:
               
533-789
               

               
Cow position:
               
chr9:27697441-27697702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
533-807
               

               
Cow position:
               
chr9:10092106-10092390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
39, 76
               

               
Conread position:
               
533-815
               

               
Cow position:
               
chr9:20416224-20416514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
72, 38
               

               
Conread position:
               
533-840
               

               
Cow position:
               
chr9:38344183-38343860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
30, 305
               

               
Conread position:
               
533-845
               

               
Cow position:
               
chr9:23430858-23431181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
72, 37
               

               
Conread position:
               
533-847
               

               
Cow position:
               
chr9:52787248-52787576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
30, 112
               

               
Conread position:
               
533-850
               

               
Cow position:
               
chr9:28747234-28747560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
39, 104
               

               
Conread position:
               
533-850
               

               
Cow position:
               
chr9:35904463-35904785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
39, 92
               

               
Conread position:
               
533-850
               

               
Cow position:
               
chr9:59386493-59386809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
75, 33
               

               
Conread position:
               
533-889
               

               
Cow position:
               
chr9:9552375-9552007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
34, 142
               

               
Conread position:
               
533-889
               

               
Cow position:
               
chr9:19714358-19713996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
31, 108
               

               
Conread position:
               
533-932
               

               
Cow position:
               
chr9:59924829-59924425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
26, 44
               

               
Conread position:
               
533-938
               

               
Cow position:
               
chr9:28948140-28947735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 115
               

               
Conread position:
               
533-938
               

               
Cow position:
               
chr9:63784637-63785060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
39, 50
               

               
Conread position:
               
534-764
               

               
Cow position:
               
chr9:18072831-18073062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
25, 115
               

               
Conread position:
               
534-845
               

               
Cow position:
               
chr9:648062-647742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
33, 49
               

               
Conread position:
               
534-851
               

               
Cow position:
               
chr9:7410069-7409722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
38, 108
               

               
Conread position:
               
534-892
               

               
Cow position:
               
chr9:42498116-42497738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
38, 110
               

               
Conread position:
               
534-936
               

               
Cow position:
               
chr9:14961235-14960822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
41, 25
               

               
Conread position:
               
534-938
               

               
Cow position:
               
chr9:3387978-3387565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
24, 110
               

               
Conread position:
               
534-938
               

               
Cow position:
               
chr9:9823232-9823633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 77
               

               
Conread position:
               
534-938
               

               
Cow position:
               
chr9:50606666-50607081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
34, 99
               

               
Conread position:
               
534-940
               

               
Cow position:
               
chr9:13670924-13670483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
23, 183
               

               
Conread position:
               
535-847
               

               
Cow position:
               
chr9:35850184-35849866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 108
               

               
Conread position:
               
535-888
               

               
Cow position:
               
chr9:22443326-22443710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 24
               

               
Conread position:
               
535-889
               

               
Cow position:
               
chr9:824241-823878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
32, 82
               

               
Conread position:
               
535-889
               

               
Cow position:
               
chr9:10011086-10010731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
20, 13
               

               
Conread position:
               
535-889
               

               
Cow position:
               
chr9:32306954-32307315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
70, 31
               

               
Conread position:
               
535-910
               

               
Cow position:
               
chr9:3932253-3931858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
4e-39
               

               
Alignm gaps (pig, cow):
               
15, 21
               

               
Conread position:
               
535-919
               

               
Cow position:
               
chr9:2863716-2863331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
70, 152
               

               
Conread position:
               
535-938
               

               
Cow position:
               
chr9:63598107-63597705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
535-940
               

               
Cow position:
               
chr9:34468307-34468712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
536-753
               

               
Cow position:
               
chr9:30664494-30664723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
36, 23
               

               
Conread position:
               
536-785
               

               
Cow position:
               
chr9:18002664-18002928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 109
               

               
Conread position:
               
536-850
               

               
Cow position:
               
chr9:51205006-51204687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
69, 34
               

               
Conread position:
               
536-889
               

               
Cow position:
               
chr9:18216814-18217183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 13
               

               
Conread position:
               
536-938
               

               
Cow position:
               
chr9:19903337-19902941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
39, 69
               

               
Conread position:
               
536-938
               

               
Cow position:
               
chr9:58669664-58669249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
37, 23
               

               
Conread position:
               
537-754
               

               
Cow position:
               
chr9:30189382-30189157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
67, 139
               

               
Conread position:
               
537-837
               

               
Cow position:
               
chr9:35533668-35533980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
5e-40
               

               
Alignm gaps (pig, cow):
               
34, 22
               

               
Conread position:
               
537-850
               

               
Cow position:
               
chr9:3220403-3220096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
144, 18
               

               
Conread position:
               
537-851
               

               
Cow position:
               
chr9:44914812-44915138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
537-866
               

               
Cow position:
               
chr9:24997232-24997578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
2.8026e-45
               

               
Alignm gaps (pig, cow):
               
35, 56
               

               
Conread position:
               
537-892
               

               
Cow position:
               
chr9:17310278-17310647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
35, 70
               

               
Conread position:
               
537-938
               

               
Cow position:
               
chr9:29808749-29808323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
25, 417
               

               
Conread position:
               
537-938
               

               
Cow position:
               
chr9:54437536-54437128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
38, 22
               

               
Conread position:
               
538-788
               

               
Cow position:
               
chr9:35305837-35306095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
34, 111
               

               
Conread position:
               
538-884
               

               
Cow position:
               
chr9:47906007-47906358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
6.00036e-42
               

               
Alignm gaps (pig, cow):
               
37, 21
               

               
Conread position:
               
538-893
               

               
Cow position:
               
chr9:8288901-8288530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
25, 107
               

               
Conread position:
               
539-816
               

               
Cow position:
               
chr9:31587815-31588108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
539-892
               

               
Cow position:
               
chr9:41283310-41282928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
540-845
               

               
Cow position:
               
chr9:47472977-47472651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3e-25
               

               
Alignm gaps (pig, cow):
               
32, 96
               

               
Conread position:
               
540-889
               

               
Cow position:
               
chr9:51566207-51566579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
35, 19
               

               
Conread position:
               
540-896
               

               
Cow position:
               
chr9:37069288-37069651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
32, 94
               

               
Conread position:
               
540-938
               

               
Cow position:
               
chr9:5756722-5757128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 104
               

               
Conread position:
               
540-938
               

               
Cow position:
               
chr9:28983462-28983050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
540-938
               

               
Cow position:
               
chr9:47869288-47868873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
10, 147
               

               
Conread position:
               
543-788
               

               
Cow position:
               
chr9:27076973-27077219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
29, 91
               

               
Conread position:
               
543-848
               

               
Cow position:
               
chr9:17929051-17928719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
543-887
               

               
Cow position:
               
chr9:58204941-58204591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
543-889
               

               
Cow position:
               
chr9:55287613-55287973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
32, 106
               

               
Conread position:
               
545-889
               

               
Cow position:
               
chr9:64559610-64559966 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
546-809
               

               
Cow position:
               
chr9:40105751-40105469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
21, 101
               

               
Conread position:
               
546-938
               

               
Cow position:
               
chr9:20961013-20961392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 80
               

               
Conread position:
               
547-876
               

               
Cow position:
               
chr9:32625270-32624937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
26, 42
               

               
Conread position:
               
549-941
               

               
Cow position:
               
chr9:9200453-9200857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7.00649e-44
               

               
Alignm gaps (pig, cow):
               
24, 95
               

               
Conread position:
               
555-883
               

               
Cow position:
               
chr9:55118344-55118009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
555-889
               

               
Cow position:
               
chr9:33598247-33597904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 87
               

               
Conread position:
               
555-916
               

               
Cow position:
               
chr9:34287060-34286690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
17, 61
               

               
Conread position:
               
555-925
               

               
Cow position:
               
chr9:23043041-23042658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 88
               

               
Conread position:
               
555-938
               

               
Cow position:
               
chr9:20839880-20839496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
20, 89
               

               
Conread position:
               
556-837
               

               
Cow position:
               
chr9:34742466-34742751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
49, 15
               

               
Conread position:
               
556-838
               

               
Cow position:
               
chr9:6225189-6225482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
49, 87
               

               
Conread position:
               
556-851
               

               
Cow position:
               
chr9:8534418-8534731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
556-889
               

               
Cow position:
               
chr9:23541153-23541467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 82
               

               
Conread position:
               
556-890
               

               
Cow position:
               
chr9:9753134-9753475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
52, 10
               

               
Conread position:
               
559-815
               

               
Cow position:
               
chr9:29108799-29108532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
16, 41
               

               
Conread position:
               
559-892
               

               
Cow position:
               
chr9:38846087-38846419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
13, 72
               

               
Conread position:
               
563-889
               

               
Cow position:
               
chr9:31814121-31814470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
7, 76
               

               
Conread position:
               
567-938
               

               
Cow position:
               
chr9:5209836-5209451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 319
               

               
Conread position:
               
571-846
               

               
Cow position:
               
chr9:44552995-44552710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
33, 69
               

               
Conread position:
               
571-850
               

               
Cow position:
               
chr9:25922071-25921783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9e-36
               

               
Alignm gaps (pig, cow):
               
35, 15
               

               
Conread position:
               
571-851
               

               
Cow position:
               
chr9:7363275-7362987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
37, 73
               

               
Conread position:
               
571-883
               

               
Cow position:
               
chr9:48118454-48118759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
37, 45
               

               
Conread position:
               
571-884
               

               
Cow position:
               
chr9:55890057-55889736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-24
               

               
Alignm gaps (pig, cow):
               
37, 78
               

               
Conread position:
               
571-930
               

               
Cow position:
               
chr9:3959302-3958945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
7e-34
               

               
Alignm gaps (pig, cow):
               
34, 69
               

               
Conread position:
               
571-938
               

               
Cow position:
               
chr9:58979649-58979254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
36, 258
               

               
Conread position:
               
574-731
               

               
Cow position:
               
chr9:17806237-17806079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
36, 62
               

               
Conread position:
               
574-845
               

               
Cow position:
               
chr9:214217-214496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
29, 158
               

               
Conread position:
               
574-889
               

               
Cow position:
               
chr9:14796533-14796854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-23
               

               
Alignm gaps (pig, cow):
               
36, 41
               

               
Conread position:
               
574-889
               

               
Cow position:
               
chr9:50139526-50139201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
575-850
               

               
Cow position:
               
chr9:49710088-49709807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-35
               

               
Alignm gaps (pig, cow):
               
30, 167
               

               
Conread position:
               
578-892
               

               
Cow position:
               
chr9:56011738-56011412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
27, 186
               

               
Conread position:
               
580-938
               

               
Cow position:
               
chr9:15006512-15006879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
24, 200
               

               
Conread position:
               
581-889
               

               
Cow position:
               
chr9:11319394-11319718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
24, 63
               

               
Conread position:
               
582-851
               

               
Cow position:
               
chr9:35027936-35028206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
26, 36
               

               
Conread position:
               
584-884
               

               
Cow position:
               
chr9:15225055-15225375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
587-920
               

               
Cow position:
               
chr9:4580188-4580524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
23, 53
               

               
Conread position:
               
588-820
               

               
Cow position:
               
chr9:32711163-32710920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
17, 59
               

               
Conread position:
               
596-845
               

               
Cow position:
               
chr9:30652487-30652744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
128, 11
               

               
Conread position:
               
597-851
               

               
Cow position:
               
chr9:28391814-28392066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
45, 140
               

               
Conread position:
               
599-875
               

               
Cow position:
               
chr9:49417202-49416917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
77, 38
               

               
Conread position:
               
603-889
               

               
Cow position:
               
chr9:62668468-62668166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
5, 107
               

               
Conread position:
               
604-888
               

               
Cow position:
               
chr9:28354728-28354434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
129, 33
               

               
Conread position:
               
604-930
               

               
Cow position:
               
chr9:9315511-9315181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
65, 24
               

               
Conread position:
               
604-938
               

               
Cow position:
               
chr9:15684578-15684919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
604-938
               

               
Cow position:
               
chr9:25469242-25468923 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
604-938
               

               
Cow position:
               
chr9:32816924-32817272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
66, 33
               

               
Conread position:
               
604-942
               

               
Cow position:
               
chr9:47108801-47108478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
25, 77
               

               
Conread position:
               
606-938
               

               
Cow position:
               
chr9:39428588-39428932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-37
               

               
Alignm gaps (pig, cow):
               
36, 87
               

               
Conread position:
               
610-850
               

               
Cow position:
               
chr9:19493255-19493506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-32
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
612-938
               

               
Cow position:
               
chr9:27292082-27292409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
84, 13
               

               
Conread position:
               
614-850
               

               
Cow position:
               
chr9:17799831-17799585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-33
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
618-851
               

               
Cow position:
               
chr9:50543224-50543469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-27
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
619-851
               

               
Cow position:
               
chr9:11313315-11313551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
52, 16
               

               
Conread position:
               
619-940
               

               
Cow position:
               
chr9:24837723-24837407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
6e-21
               

               
Alignm gaps (pig, cow):
               
57, 9
               

               
Conread position:
               
623-938
               

               
Cow position:
               
chr9:32115416-32115731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 38
               

               
Conread position:
               
628-892
               

               
Cow position:
               
chr9:56065734-56065477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
628-915
               

               
Cow position:
               
chr9:34106908-34106604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
69, 9
               

               
Conread position:
               
639-940
               

               
Cow position:
               
chr9:5575496-5575184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
57, 145
               

               
Conread position:
               
643-875
               

               
Cow position:
               
chr9:40215416-40215177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
35, 179
               

               
Conread position:
               
643-889
               

               
Cow position:
               
chr9:17518316-17518573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
643-938
               

               
Cow position:
               
chr9:25557138-25556832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-22
               

               
Alignm gaps (pig, cow):
               
111, 75
               

               
Conread position:
               
643-938
               

               
Cow position:
               
chr9:46252983-46252691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
205, 85
               

               
Conread position:
               
646-850
               

               
Cow position:
               
chr9:50202739-50202533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
78, 145
               

               
Conread position:
               
646-938
               

               
Cow position:
               
chr9:2888140-2887842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-31
               

               
Alignm gaps (pig, cow):
               
94, 33
               

               
Conread position:
               
647-923
               

               
Cow position:
               
chr9:12225812-12226094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
34, 61
               

               
Conread position:
               
647-938
               

               
Cow position:
               
chr9:51720733-51721038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-38
               

               
Alignm gaps (pig, cow):
               
27, 122
               

               
Conread position:
               
649-937
               

               
Cow position:
               
chr9:55562661-55562365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-24
               

               
Alignm gaps (pig, cow):
               
77, 35
               

               
Conread position:
               
655-920
               

               
Cow position:
               
chr9:33697189-33696915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
69, 50
               

               
Conread position:
               
664-850
               

               
Cow position:
               
chr9:43937091-43936905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
60, 95
               

               
Conread position:
               
670-902
               

               
Cow position:
               
chr9:34284093-34283857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
99, 58
               

               
Conread position:
               
673-943
               

               
Cow position:
               
chr9:5399280-5398998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4.99997e-41
               

               
Alignm gaps (pig, cow):
               
52, 233
               

               
Conread position:
               
677-845
               

               
Cow position:
               
chr9:43013862-43013687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-28
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
726-938
               

               
Cow position:
               
chr9:27347878-27347667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
101, 10
               

               
Conread position:
               
742-901
               

               
Cow position:
               
chr9:24429028-24429193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-30
               

               
Alignm gaps (pig, cow):
               
80, 6
               

               
Conread position:
               
743-938
               

               
Cow position:
               
chr9:25400132-25400338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
12, 49
               

               
Conread position:
               
773-938
               

               
Cow position:
               
chr9:26559574-26559746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
773-943
               

               
Cow position:
               
chr9:5829102-5828929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
775-936
               

               
Cow position:
               
chr9:60549375-60549543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
802-938
               

               
Cow position:
               
chr9:34431829-34431688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
9e-25
               

               
Alignm gaps (pig, cow):
               
26, 95
               
Show alignments to all cow chromosomes.