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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8025C15.5
        

               
Conread position:
               
624-1002
               

               
Cow position:
               
chr1:78096757-78097127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
18, 79
               

               
Conread position:
               
627-921
               

               
Cow position:
               
chr1:24534428-24534135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
173, 34
               

               
Conread position:
               
627-993
               

               
Cow position:
               
chr1:31348617-31348247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 256
               

               
Conread position:
               
629-939
               

               
Cow position:
               
chr1:31272615-31272304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 131
               

               
Conread position:
               
642-983
               

               
Cow position:
               
chr1:51628658-51628326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
644-992
               

               
Cow position:
               
chr1:98453426-98453786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
5, 142
               

               
Conread position:
               
644-999
               

               
Cow position:
               
chr1:71079114-71078764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
213, 46
               

               
Conread position:
               
646-845
               

               
Cow position:
               
chr1:45535549-45535750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
118, 183
               

               
Conread position:
               
646-974
               

               
Cow position:
               
chr1:53458540-53458871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
118, 270
               

               
Conread position:
               
646-989
               

               
Cow position:
               
chr1:48444351-48444003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 136
               

               
Conread position:
               
647-819
               

               
Cow position:
               
chr1:24413288-24413468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
647-918
               

               
Cow position:
               
chr1:85028804-85029073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
117, 22
               

               
Conread position:
               
647-992
               

               
Cow position:
               
chr1:17196784-17196434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 34
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr1:6941310-6941658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
129, 47
               

               
Conread position:
               
647-999
               

               
Cow position:
               
chr1:98030763-98031113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
124, 56
               

               
Conread position:
               
647-1007
               

               
Cow position:
               
chr1:1956483-1956127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
117, 71
               

               
Conread position:
               
648-775
               

               
Cow position:
               
chr1:67821364-67821237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
648-783
               

               
Cow position:
               
chr1:63905625-63905492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
648-787
               

               
Cow position:
               
chr1:3035147-3035005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-788
               

               
Cow position:
               
chr1:31960070-31960214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
648-809
               

               
Cow position:
               
chr1:41004517-41004353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-814
               

               
Cow position:
               
chr1:75967277-75967443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 120
               

               
Conread position:
               
648-819
               

               
Cow position:
               
chr1:24445781-24445610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 33
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chr1:29671674-29671502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 8
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chr1:55135679-55135850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-825
               

               
Cow position:
               
chr1:71946526-71946347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
648-841
               

               
Cow position:
               
chr1:89508402-89508588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
152, 116
               

               
Conread position:
               
648-845
               

               
Cow position:
               
chr1:82443611-82443411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 104
               

               
Conread position:
               
648-846
               

               
Cow position:
               
chr1:99136585-99136386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
139, 165
               

               
Conread position:
               
648-849
               

               
Cow position:
               
chr1:98563009-98563209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
148, 73
               

               
Conread position:
               
648-867
               

               
Cow position:
               
chr1:1991575-1991350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
116, 73
               

               
Conread position:
               
648-869
               

               
Cow position:
               
chr1:69415868-69415639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
648-871
               

               
Cow position:
               
chr1:94404058-94404283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-872
               

               
Cow position:
               
chr1:42555111-42555339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr1:60281216-60281448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
133, 0
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr1:74947277-74947043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 232
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr1:6788440-6788207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
116, 146
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr1:55146651-55146874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr1:68951473-68951701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
143, 124
               

               
Conread position:
               
648-876
               

               
Cow position:
               
chr1:89497811-89498030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-890
               

               
Cow position:
               
chr1:70026498-70026254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
181, 120
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chr1:4414362-4414105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
116, 171
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chr1:20204872-20205131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chr1:81563582-81563849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chr1:88652476-88652740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
116, 108
               

               
Conread position:
               
648-918
               

               
Cow position:
               
chr1:91800756-91800480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 93
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr1:54478170-54478449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 139
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr1:72304525-72304269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
203, 69
               

               
Conread position:
               
648-920
               

               
Cow position:
               
chr1:44125798-44125517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
114, 19
               

               
Conread position:
               
648-920
               

               
Cow position:
               
chr1:75933118-75933387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
253, 118
               

               
Conread position:
               
648-921
               

               
Cow position:
               
chr1:42874101-42873828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
121, 70
               

               
Conread position:
               
648-923
               

               
Cow position:
               
chr1:51968307-51968585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
648-924
               

               
Cow position:
               
chr1:95176785-95177062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
648-925
               

               
Cow position:
               
chr1:95215336-95215064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
51, 143
               

               
Conread position:
               
648-927
               

               
Cow position:
               
chr1:100393315-100393033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
648-929
               

               
Cow position:
               
chr1:19885234-19885512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
132, 46
               

               
Conread position:
               
648-929
               

               
Cow position:
               
chr1:93043875-93044148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chr1:74822301-74822581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
116, 73
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr1:4291004-4291295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 276
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chr1:100800205-100800481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
152, 16
               

               
Conread position:
               
648-934
               

               
Cow position:
               
chr1:84255604-84255905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
44, 75
               

               
Conread position:
               
648-938
               

               
Cow position:
               
chr1:93554689-93554976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
43, 85
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:3167223-3166935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:3882619-3882320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
115, 96
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:81613235-81613529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
140, 112
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:83747790-83748080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 75
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:85162698-85162408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr1:90868593-90868306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
124, 40
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr1:52994873-52995166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
116, 52
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr1:62036650-62036945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
42, 72
               

               
Conread position:
               
648-943
               

               
Cow position:
               
chr1:91875061-91874771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
115, 9
               

               
Conread position:
               
648-945
               

               
Cow position:
               
chr1:21787176-21787483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-946
               

               
Cow position:
               
chr1:73960551-73960846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
152, 122
               

               
Conread position:
               
648-961
               

               
Cow position:
               
chr1:52039482-52039793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 86
               

               
Conread position:
               
648-969
               

               
Cow position:
               
chr1:84910781-84910473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
114, 13
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr1:68619088-68618762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
53, 256
               

               
Conread position:
               
648-979
               

               
Cow position:
               
chr1:53397837-53398151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-986
               

               
Cow position:
               
chr1:61005716-61005375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
64, 118
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chr1:41056529-41056866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chr1:93528540-93528880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 129
               

               
Conread position:
               
648-988
               

               
Cow position:
               
chr1:83072289-83072629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:197158-196818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 71
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:11729027-11729359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
114, 140
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:37322156-37321822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 203
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:41696904-41697242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 136
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:69678476-69678135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:70434849-70435174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:74084351-74084000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
54, 274
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:75744706-75745048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 271
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:78857475-78857138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:80311316-80311645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
116, 88
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr1:93499472-93499807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
116, 79
               

               
Conread position:
               
648-990
               

               
Cow position:
               
chr1:84906222-84905871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr1:33409782-33409433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
49, 67
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr1:49077497-49077133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
46, 243
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr1:64678547-64678870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr1:89388181-89388533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr1:49317651-49317310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
50, 141
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr1:63434960-63434607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
52, 40
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr1:72103692-72104045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 134
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr1:79165240-79164891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
50, 235
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:3923949-3923612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
141, 161
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:5597352-5597020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
117, 62
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:12222759-12222412 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
45, 137
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:14309192-14308837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 236
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:20667896-20667558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
116, 138
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:24542733-24542378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:24581429-24581758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 63
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:26178965-26178616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
50, 77
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:28563723-28563369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
50, 96
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:29935532-29935199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:31934360-31934696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
52, 15
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:33331239-33330910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 59
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:40599889-40600217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
129, 112
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:42175570-42175920 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:44506813-44507160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
44, 259
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:51445725-51446074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
44, 102
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:54206973-54206627 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
114, 263
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:55705404-55705055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 316
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:57575913-57575572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 121
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:59518766-59519103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:61742122-61741772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
65, 72
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:62964124-62964460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
65, 77
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:64804258-64803905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:68763836-68763492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 51
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:73546057-73545716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
41, 88
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:74929868-74929516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:77720386-77720068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:78091878-78092232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
46, 287
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:79590950-79591296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
49, 124
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:81569185-81568837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 235
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:82337935-82337588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
145, 200
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:82884544-82884184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:84812087-84811749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
116, 56
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:88913163-88913512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 142
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:90621665-90621314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:90864450-90864099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
54, 121
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:92197310-92197646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr1:92369578-92369943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
120, 138
               

               
Conread position:
               
648-994
               

               
Cow position:
               
chr1:101280870-101280544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
648-995
               

               
Cow position:
               
chr1:484620-484269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 15
               

               
Conread position:
               
648-995
               

               
Cow position:
               
chr1:25383508-25383863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 283
               

               
Conread position:
               
648-996
               

               
Cow position:
               
chr1:25386897-25387243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
12, 28
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr1:101634550-101634895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
116, 96
               

               
Conread position:
               
648-1000
               

               
Cow position:
               
chr1:96277209-96276852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
82, 158
               

               
Conread position:
               
648-1001
               

               
Cow position:
               
chr1:89381120-89381473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 248
               

               
Conread position:
               
648-1001
               

               
Cow position:
               
chr1:89510083-89509726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
23, 65
               

               
Conread position:
               
648-1002
               

               
Cow position:
               
chr1:68817953-68817600 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 181
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr1:33207025-33206672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
202, 97
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr1:34771659-34771296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 101
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr1:71295465-71295097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
26, 114
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr1:42398351-42397993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr1:55429110-55428750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 57
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr1:57880943-57880575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 235
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr1:102784810-102785149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
129, 16
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr1:16767235-16766882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 48
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr1:55357440-55357085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
46, 145
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr1:70538453-70538812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 278
               

               
Conread position:
               
648-1007
               

               
Cow position:
               
chr1:22728897-22729265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
115, 274
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr1:96964166-96964531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
649-817
               

               
Cow position:
               
chr1:57900892-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
151, 72
               

               
Conread position:
               
649-818
               

               
Cow position:
               
chr1:12596057-12595885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
649-821
               

               
Cow position:
               
chr1:1403632-1403462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
649-890
               

               
Cow position:
               
chr1:43703254-43703500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
649-903
               

               
Cow position:
               
chr1:62291845-62291597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
17, 120
               

               
Conread position:
               
649-903
               

               
Cow position:
               
chr1:89349814-89350069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
115, 18
               

               
Conread position:
               
649-910
               

               
Cow position:
               
chr1:38401641-38401910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
649-910
               

               
Cow position:
               
chr1:45289025-45288759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
649-918
               

               
Cow position:
               
chr1:19465903-19466170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
649-930
               

               
Cow position:
               
chr1:36932004-36932285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
195, 117
               

               
Conread position:
               
649-938
               

               
Cow position:
               
chr1:41115868-41115583 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
115, 131
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr1:98551563-98551860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 257
               

               
Conread position:
               
649-940
               

               
Cow position:
               
chr1:71253706-71253418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
83, 89
               

               
Conread position:
               
649-950
               

               
Cow position:
               
chr1:89342148-89341832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
113, 292
               

               
Conread position:
               
649-978
               

               
Cow position:
               
chr1:87197674-87197997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
649-979
               

               
Cow position:
               
chr1:13637826-13637487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
63, 241
               

               
Conread position:
               
649-988
               

               
Cow position:
               
chr1:43389201-43388867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 25
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr1:6077745-6078088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
97, 178
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr1:62519204-62519554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr1:48105589-48105234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 170
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr1:78810886-78811229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 95
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr1:79844313-79844670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
69, 49
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:8467-8810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
16, 85
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:7748064-7748408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:7752230-7752572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:12464819-12464473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
115, 271
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:14379686-14379358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
117, 19
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:24133212-24132871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 73
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:33719964-33720296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
43, 101
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:43505371-43505716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
115, 274
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:70094188-70094530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:71119359-71119713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:72011963-72011630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
47, 181
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:76740837-76740480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 186
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:81290361-81290696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 41
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:86110884-86110553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 126
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr1:101713968-101714308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
649-1000
               

               
Cow position:
               
chr1:86682716-86682368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
649-1002
               

               
Cow position:
               
chr1:48580976-48581329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
650-918
               

               
Cow position:
               
chr1:70380298-70380024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
84, 162
               

               
Conread position:
               
650-992
               

               
Cow position:
               
chr1:74956174-74955841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 198
               

               
Conread position:
               
650-992
               

               
Cow position:
               
chr1:95499644-95499305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
141, 34
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr1:22192611-22192962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
47, 299
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr1:54156890-54156542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
49, 109
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr1:61012161-61012498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr1:102756580-102756243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
48, 17
               

               
Conread position:
               
651-912
               

               
Cow position:
               
chr1:12978529-12978795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
137, 178
               

               
Conread position:
               
651-930
               

               
Cow position:
               
chr1:81913299-81913023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
122, 57
               

               
Conread position:
               
651-931
               

               
Cow position:
               
chr1:47233630-47233345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
651-939
               

               
Cow position:
               
chr1:7971270-7971555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
104, 63
               

               
Conread position:
               
651-939
               

               
Cow position:
               
chr1:65909375-65909649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chr1:42887416-42887092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
201, 75
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chr1:101834673-101835004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
651-992
               

               
Cow position:
               
chr1:99609217-99609558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
44, 10
               

               
Conread position:
               
651-1003
               

               
Cow position:
               
chr1:19482226-19481897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
148, 60
               

               
Conread position:
               
651-1004
               

               
Cow position:
               
chr1:54258412-54258772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
42, 88
               

               
Conread position:
               
652-789
               

               
Cow position:
               
chr1:89082960-89083101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
652-821
               

               
Cow position:
               
chr1:77099698-77099528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
112, 12
               

               
Conread position:
               
652-993
               

               
Cow position:
               
chr1:56225315-56225658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 269
               

               
Conread position:
               
652-1001
               

               
Cow position:
               
chr1:86113561-86113196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
47, 141
               

               
Conread position:
               
653-989
               

               
Cow position:
               
chr1:2075487-2075162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
195, 15
               

               
Conread position:
               
653-989
               

               
Cow position:
               
chr1:100761930-100762262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
126, 37
               

               
Conread position:
               
653-992
               

               
Cow position:
               
chr1:50931125-50930789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
111, 82
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr1:22525730-22526066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr1:24778134-24777792 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
111, 33
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr1:65318426-65318769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
39, 71
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr1:82936735-82936413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
147, 66
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr1:97755368-97755693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
111, 17
               

               
Conread position:
               
653-1004
               

               
Cow position:
               
chr1:53374282-53374630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 25
               

               
Conread position:
               
654-932
               

               
Cow position:
               
chr1:85647930-85647650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
110, 242
               

               
Conread position:
               
654-993
               

               
Cow position:
               
chr1:61564648-61564973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
110, 174
               

               
Conread position:
               
655-989
               

               
Cow position:
               
chr1:91023615-91023280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 171
               

               
Conread position:
               
655-993
               

               
Cow position:
               
chr1:1981261-1980918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 59
               

               
Conread position:
               
656-939
               

               
Cow position:
               
chr1:53671884-53671609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
105, 8
               

               
Conread position:
               
657-989
               

               
Cow position:
               
chr1:20950576-20950905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
195, 109
               

               
Conread position:
               
658-930
               

               
Cow position:
               
chr1:97090183-97090459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
106, 62
               

               
Conread position:
               
658-992
               

               
Cow position:
               
chr1:8129111-8128788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
661-878
               

               
Cow position:
               
chr1:87440327-87440546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
103, 77
               

               
Conread position:
               
664-863
               

               
Cow position:
               
chr1:85301280-85301481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
100, 81
               

               
Conread position:
               
664-938
               

               
Cow position:
               
chr1:39069093-39068818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
136, 121
               

               
Conread position:
               
664-939
               

               
Cow position:
               
chr1:85550216-85549937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
100, 122
               

               
Conread position:
               
664-988
               

               
Cow position:
               
chr1:72068977-72068644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
664-989
               

               
Cow position:
               
chr1:89448759-89449086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 254
               

               
Conread position:
               
664-992
               

               
Cow position:
               
chr1:45555226-45555556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
100, 141
               

               
Conread position:
               
667-939
               

               
Cow position:
               
chr1:41047435-41047165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
97, 38
               

               
Conread position:
               
667-991
               

               
Cow position:
               
chr1:64302383-64302060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
96, 259
               

               
Conread position:
               
667-993
               

               
Cow position:
               
chr1:101860624-101860295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
90, 77
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr1:78838665-78838975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
131, 69
               

               
Conread position:
               
669-989
               

               
Cow position:
               
chr1:97954592-97954295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
127, 49
               

               
Conread position:
               
670-993
               

               
Cow position:
               
chr1:64572381-64572706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 269
               

               
Conread position:
               
673-993
               

               
Cow position:
               
chr1:10632919-10633232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 48
               

               
Conread position:
               
674-880
               

               
Cow position:
               
chr1:80899989-80900201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
90, 96
               

               
Conread position:
               
676-993
               

               
Cow position:
               
chr1:4243469-4243138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 99
               

               
Conread position:
               
677-993
               

               
Cow position:
               
chr1:5010965-5010641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 94
               

               
Conread position:
               
677-993
               

               
Cow position:
               
chr1:11172249-11172560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
16, 87
               

               
Conread position:
               
678-921
               

               
Cow position:
               
chr1:3790190-3789948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 95
               

               
Conread position:
               
680-993
               

               
Cow position:
               
chr1:20104146-20104458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
83, 101
               

               
Conread position:
               
680-993
               

               
Cow position:
               
chr1:79640412-79640097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
84, 14
               

               
Conread position:
               
683-824
               

               
Cow position:
               
chr1:9437428-9437284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
683-992
               

               
Cow position:
               
chr1:261598-261273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
81, 45
               

               
Conread position:
               
683-993
               

               
Cow position:
               
chr1:58754914-58754606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
81, 29
               

               
Conread position:
               
684-993
               

               
Cow position:
               
chr1:26934379-26934076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
172, 36
               

               
Conread position:
               
688-845
               

               
Cow position:
               
chr1:58439115-58438956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
76, 11
               

               
Conread position:
               
690-939
               

               
Cow position:
               
chr1:45553356-45553102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
690-940
               

               
Cow position:
               
chr1:7023008-7023261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
74, 59
               

               
Conread position:
               
690-992
               

               
Cow position:
               
chr1:98059937-98060250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
35, 27
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chr1:10716390-10716697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
96, 48
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chr1:41138244-41137956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
74, 94
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chr1:56618763-56618464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 85
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chr1:81477981-81477671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
74, 10
               

               
Conread position:
               
690-1001
               

               
Cow position:
               
chr1:23999033-23998724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
167, 38
               

               
Conread position:
               
692-939
               

               
Cow position:
               
chr1:37886921-37886671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 135
               

               
Conread position:
               
693-1004
               

               
Cow position:
               
chr1:648215-648531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
83, 92
               

               
Conread position:
               
694-930
               

               
Cow position:
               
chr1:67688689-67688451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 92
               

               
Conread position:
               
695-1003
               

               
Cow position:
               
chr1:65028422-65028722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
26, 226
               

               
Conread position:
               
696-1004
               

               
Cow position:
               
chr1:10616774-10617094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
67, 205
               

               
Conread position:
               
701-993
               

               
Cow position:
               
chr1:635786-635492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
63, 85
               

               
Conread position:
               
702-993
               

               
Cow position:
               
chr1:82513456-82513160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
62, 190
               

               
Conread position:
               
703-1005
               

               
Cow position:
               
chr1:22944125-22943824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 108
               

               
Conread position:
               
709-993
               

               
Cow position:
               
chr1:90904847-90904565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
98, 53
               

               
Conread position:
               
716-944
               

               
Cow position:
               
chr1:80841564-80841790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
6, 57
               

               
Conread position:
               
718-939
               

               
Cow position:
               
chr1:50991850-50992075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 39
               

               
Conread position:
               
722-989
               

               
Cow position:
               
chr1:78066620-78066355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
12, 88
               

               
Conread position:
               
723-910
               

               
Cow position:
               
chr1:52467222-52467414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
724-875
               

               
Cow position:
               
chr1:61560805-61560647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
724-992
               

               
Cow position:
               
chr1:98583679-98583939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
727-989
               

               
Cow position:
               
chr1:35671466-35671724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
17, 74
               

               
Conread position:
               
727-993
               

               
Cow position:
               
chr1:79135203-79135471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
24, 119
               

               
Conread position:
               
732-989
               

               
Cow position:
               
chr1:89158200-89157942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
39, 191
               

               
Conread position:
               
734-992
               

               
Cow position:
               
chr1:48618307-48618056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
108, 7
               

               
Conread position:
               
737-950
               

               
Cow position:
               
chr1:80584365-80584577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
739-964
               

               
Cow position:
               
chr1:3965776-3965999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
25, 47
               

               
Conread position:
               
739-993
               

               
Cow position:
               
chr1:46143526-46143275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
43, 185
               

               
Conread position:
               
739-993
               

               
Cow position:
               
chr1:54267997-54267748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
61, 30
               

               
Conread position:
               
739-993
               

               
Cow position:
               
chr1:95072266-95072535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
740-993
               

               
Cow position:
               
chr1:48206598-48206348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
24, 100
               

               
Conread position:
               
742-992
               

               
Cow position:
               
chr1:79003913-79004167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
22, 117
               

               
Conread position:
               
748-992
               

               
Cow position:
               
chr1:81481439-81481194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
16, 170
               

               
Conread position:
               
748-993
               

               
Cow position:
               
chr1:70175596-70175349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
28, 170
               

               
Conread position:
               
757-989
               

               
Cow position:
               
chr1:102529902-102529665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
7, 29
               

               
Conread position:
               
763-987
               

               
Cow position:
               
chr1:62997758-62997987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 67
               

               
Conread position:
               
764-993
               

               
Cow position:
               
chr1:8287670-8287438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
766-1003
               

               
Cow position:
               
chr1:89158733-89158501 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
216, 60
               

               
Conread position:
               
770-993
               

               
Cow position:
               
chr1:67654353-67654133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 149
               

               
Conread position:
               
772-993
               

               
Cow position:
               
chr1:82537899-82538119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
13, 57
               

               
Conread position:
               
774-993
               

               
Cow position:
               
chr1:41027046-41027264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 143
               

               
Conread position:
               
777-1003
               

               
Cow position:
               
chr1:83025192-83024963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
9, 104
               

               
Conread position:
               
786-997
               

               
Cow position:
               
chr1:24530485-24530694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
37, 42
               

               
Conread position:
               
787-989
               

               
Cow position:
               
chr1:45315652-45315443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
794-989
               

               
Cow position:
               
chr1:759427-759224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
800-993
               

               
Cow position:
               
chr1:100573629-100573436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 80
               

               
Conread position:
               
802-989
               

               
Cow position:
               
chr1:7965853-7966035 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
806-993
               

               
Cow position:
               
chr1:42774915-42775098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
42, 21
               

               
Conread position:
               
808-993
               

               
Cow position:
               
chr1:71946078-71945888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
808-1003
               

               
Cow position:
               
chr1:70483328-70483132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 107
               

               
Conread position:
               
811-989
               

               
Cow position:
               
chr1:55685969-55685790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
43, 114
               

               
Conread position:
               
817-1004
               

               
Cow position:
               
chr1:102730747-102730554 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
826-989
               

               
Cow position:
               
chr1:102523617-102523452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
26, 137
               

               
Conread position:
               
826-999
               

               
Cow position:
               
chr1:91743435-91743265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
832-993
               

               
Cow position:
               
chr1:30028199-30028040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
49, 44
               

               
Conread position:
               
851-989
               

               
Cow position:
               
chr1:10470478-10470610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
853-993
               

               
Cow position:
               
chr1:1799084-1799224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
23, 28
               

               
Conread position:
               
853-993
               

               
Cow position:
               
chr1:80423678-80423540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
853-993
               

               
Cow position:
               
chr1:92578779-92578642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
69, 0
               
Show alignments to all cow chromosomes.