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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8025C15.5
        

               
Conread position:
               
629-989
               

               
Cow position:
               
chr11:18698684-18699036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
135, 7
               

               
Conread position:
               
646-873
               

               
Cow position:
               
chr11:67550556-67550327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
18, 98
               

               
Conread position:
               
646-921
               

               
Cow position:
               
chr11:17278846-17278577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 94
               

               
Conread position:
               
646-989
               

               
Cow position:
               
chr11:13592556-13592905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
46, 74
               

               
Conread position:
               
646-993
               

               
Cow position:
               
chr11:2083956-2084315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
48, 241
               

               
Conread position:
               
646-993
               

               
Cow position:
               
chr11:15016864-15017228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
647-920
               

               
Cow position:
               
chr11:22499528-22499269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
153, 54
               

               
Conread position:
               
647-931
               

               
Cow position:
               
chr11:44636937-44636649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 273
               

               
Conread position:
               
647-941
               

               
Cow position:
               
chr11:80530186-80530478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 135
               

               
Conread position:
               
647-989
               

               
Cow position:
               
chr11:53778436-53778786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
51, 17
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr11:55333732-55334089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 138
               

               
Conread position:
               
647-997
               

               
Cow position:
               
chr11:34646412-34646769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 74
               

               
Conread position:
               
648-776
               

               
Cow position:
               
chr11:19508117-19508246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
648-783
               

               
Cow position:
               
chr11:25165264-25165399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
648-807
               

               
Cow position:
               
chr11:62749926-62749774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
151, 73
               

               
Conread position:
               
648-813
               

               
Cow position:
               
chr11:25319875-25320044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-819
               

               
Cow position:
               
chr11:17968755-17968588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chr11:67951138-67950976 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
152, 62
               

               
Conread position:
               
648-822
               

               
Cow position:
               
chr11:63516648-63516824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
648-837
               

               
Cow position:
               
chr11:4412193-4412010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
152, 103
               

               
Conread position:
               
648-845
               

               
Cow position:
               
chr11:8936663-8936472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
648-845
               

               
Cow position:
               
chr11:18591610-18591414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
151, 126
               

               
Conread position:
               
648-846
               

               
Cow position:
               
chr11:16251424-16251223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-854
               

               
Cow position:
               
chr11:65430882-65431083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
648-856
               

               
Cow position:
               
chr11:42793151-42792942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
648-862
               

               
Cow position:
               
chr11:2811907-2811690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr11:10620501-10620276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr11:64090262-64090045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
203, 108
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr11:67747106-67747336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
116, 127
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr11:24937486-24937718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
648-891
               

               
Cow position:
               
chr11:45898231-45897981 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 125
               

               
Conread position:
               
648-894
               

               
Cow position:
               
chr11:39115318-39115565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-900
               

               
Cow position:
               
chr11:8840916-8840668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
199, 73
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chr11:50778195-50778448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
116, 132
               

               
Conread position:
               
648-909
               

               
Cow position:
               
chr11:31352748-31352465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
648-913
               

               
Cow position:
               
chr11:35874170-35873912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
193, 101
               

               
Conread position:
               
648-917
               

               
Cow position:
               
chr11:42044166-42043902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 59
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr11:5031953-5031679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr11:9270906-9270630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
48, 250
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr11:10213740-10213472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
117, 29
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr11:19500958-19500695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
116, 95
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr11:41271963-41272234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-921
               

               
Cow position:
               
chr11:8148075-8147800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
152, 63
               

               
Conread position:
               
648-921
               

               
Cow position:
               
chr11:17660916-17661182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
116, 96
               

               
Conread position:
               
648-927
               

               
Cow position:
               
chr11:47544952-47545238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
113, 268
               

               
Conread position:
               
648-928
               

               
Cow position:
               
chr11:16342417-16342124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
76, 9
               

               
Conread position:
               
648-929
               

               
Cow position:
               
chr11:5288-5569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 34
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr11:952093-952372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr11:23138240-23137945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
51, 189
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr11:34113087-34113374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr11:44036540-44036831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
64, 188
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr11:69119124-69119402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chr11:36238605-36238886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
116, 141
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chr11:43897962-43898247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
153, 66
               

               
Conread position:
               
648-938
               

               
Cow position:
               
chr11:7590015-7590303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 68
               

               
Conread position:
               
648-938
               

               
Cow position:
               
chr11:48474524-48474816 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
51, 249
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:30954820-30955116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 273
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:48272019-48272318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:59702305-59702609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
14, 93
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:63847674-63847962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
150, 17
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:73924738-73924445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 71
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr11:76114476-76114760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr11:66425066-66424763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 250
               

               
Conread position:
               
648-943
               

               
Cow position:
               
chr11:35684673-35684379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr11:377824-377519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
44, 275
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr11:26845759-26845471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr11:28643903-28644213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr11:33341324-33341020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr11:44234175-44234481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
114, 60
               

               
Conread position:
               
648-953
               

               
Cow position:
               
chr11:79728848-79728535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 123
               

               
Conread position:
               
648-954
               

               
Cow position:
               
chr11:11232633-11232332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
128, 257
               

               
Conread position:
               
648-954
               

               
Cow position:
               
chr11:32436153-32436469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 72
               

               
Conread position:
               
648-967
               

               
Cow position:
               
chr11:23586459-23586784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
77, 63
               

               
Conread position:
               
648-968
               

               
Cow position:
               
chr11:36112243-36112563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
42, 67
               

               
Conread position:
               
648-970
               

               
Cow position:
               
chr11:3393387-3393067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 31
               

               
Conread position:
               
648-970
               

               
Cow position:
               
chr11:45646773-45646446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 272
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr11:11469813-11469502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
208, 40
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr11:68207017-68206695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
143, 88
               

               
Conread position:
               
648-979
               

               
Cow position:
               
chr11:11557989-11558327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 274
               

               
Conread position:
               
648-980
               

               
Cow position:
               
chr11:33349877-33349545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
49, 129
               

               
Conread position:
               
648-984
               

               
Cow position:
               
chr11:38670504-38670851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
44, 192
               

               
Conread position:
               
648-985
               

               
Cow position:
               
chr11:259356-259014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
648-985
               

               
Cow position:
               
chr11:2925466-2925146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
648-985
               

               
Cow position:
               
chr11:21728447-21728126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 89
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chr11:80923502-80923162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 331
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:6400248-6399898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 26
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:24601795-24602123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
228, 114
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:27248314-27248654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 120
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:27405244-27404905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
115, 70
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:34121022-34121361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:35723801-35724136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 63
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:44031824-44032172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:46748042-46747693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
120, 105
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:49152773-49153106 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
45, 74
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:50152994-50152647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr11:83066319-83066658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr11:2907697-2907366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 123
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:9463653-9464006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 236
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:15772898-15772544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 168
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:19247374-19247036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
44, 30
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:20684755-20684401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 128
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:35347933-35347582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
45, 141
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:36058626-36058967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
49, 66
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:52381050-52380703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr11:75480205-75479853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:41005-41340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
114, 71
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:1849341-1848995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
15, 71
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:2917764-2917423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
148, 121
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:8495861-8496203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
51, 135
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:8525289-8524948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
152, 118
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:10095168-10095513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:11125484-11125835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
116, 133
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:13043322-13042978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 14
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:13061408-13061084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
144, 97
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:15632735-15632390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
84, 92
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:17036728-17036362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
44, 292
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:17083476-17083143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
133, 62
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:17860333-17859983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 117
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:20761668-20762022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 209
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:30191994-30192348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
35, 40
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:30639124-30638782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
44, 78
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:33348364-33348029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:35154003-35153650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 327
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:36182509-36182861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
89, 21
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:42016814-42016469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 123
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:42292011-42291670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
45, 56
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:45872498-45872140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:48383351-48383700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 19
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:48932763-48932419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
116, 132
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:52297399-52297053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 289
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:53773497-53773853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
31, 238
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:62239568-62239911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:65607869-65607521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
152, 136
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:66188499-66188151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:68910027-68909683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
50, 20
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:74316535-74316876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:78381230-78380899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:81300788-81300451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
42, 54
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr11:83323397-83323747 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
152, 39
               

               
Conread position:
               
648-994
               

               
Cow position:
               
chr11:40818818-40818461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
51, 290
               

               
Conread position:
               
648-996
               

               
Cow position:
               
chr11:4732163-4732517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr11:21844311-21843965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 104
               

               
Conread position:
               
648-1002
               

               
Cow position:
               
chr11:19592173-19591812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr11:29960128-29960472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 16
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr11:35580079-35580442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr11:71493036-71492679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
33, 110
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr11:2788200-2788576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
32, 246
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr11:7458465-7458099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
44, 237
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr11:67931672-67931310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
49, 208
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr11:77745434-77745068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
50, 29
               

               
Conread position:
               
649-807
               

               
Cow position:
               
chr11:47850849-47851008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
89, 138
               

               
Conread position:
               
649-820
               

               
Cow position:
               
chr11:59156056-59155882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 107
               

               
Conread position:
               
649-821
               

               
Cow position:
               
chr11:6154237-6154405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
76, 28
               

               
Conread position:
               
649-822
               

               
Cow position:
               
chr11:47165318-47165144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 108
               

               
Conread position:
               
649-874
               

               
Cow position:
               
chr11:30912167-30911952 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
151, 62
               

               
Conread position:
               
649-880
               

               
Cow position:
               
chr11:67804574-67804807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 121
               

               
Conread position:
               
649-910
               

               
Cow position:
               
chr11:48496765-48496505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 32
               

               
Conread position:
               
649-918
               

               
Cow position:
               
chr11:23128720-23128444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
16, 21
               

               
Conread position:
               
649-921
               

               
Cow position:
               
chr11:45631939-45631667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
115, 175
               

               
Conread position:
               
649-931
               

               
Cow position:
               
chr11:71501312-71501024 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
43, 17
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr11:25386886-25387185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr11:61958924-61958631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
43, 250
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr11:62225810-62226103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
78, 12
               

               
Conread position:
               
649-958
               

               
Cow position:
               
chr11:59872756-59873058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 24
               

               
Conread position:
               
649-968
               

               
Cow position:
               
chr11:8988405-8988091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
87, 49
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr11:7873970-7874306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr11:48544258-48544602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
16, 91
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr11:65157589-65157236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
65, 291
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr11:72375863-72375497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
62, 68
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:1625395-1625052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 71
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:17321483-17321835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
207, 104
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:20238493-20238846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 275
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:23272179-23271836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
15, 83
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:34616090-34616431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
48, 73
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:47899102-47899420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
193, 119
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:55052708-55053033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
20, 71
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:62620206-62620546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
135, 68
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr11:64077683-64077332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
17, 133
               

               
Conread position:
               
650-875
               

               
Cow position:
               
chr11:82796462-82796236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
80, 70
               

               
Conread position:
               
650-924
               

               
Cow position:
               
chr11:63434232-63433954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
197, 140
               

               
Conread position:
               
650-974
               

               
Cow position:
               
chr11:26144275-26143943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
48, 104
               

               
Conread position:
               
650-986
               

               
Cow position:
               
chr11:81162606-81162284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
650-989
               

               
Cow position:
               
chr11:83043540-83043201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
113, 247
               

               
Conread position:
               
650-992
               

               
Cow position:
               
chr11:34145090-34144750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
116, 47
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr11:62490260-62490591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
133, 14
               

               
Conread position:
               
651-849
               

               
Cow position:
               
chr11:955190-955391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
112, 0
               

               
Conread position:
               
651-876
               

               
Cow position:
               
chr11:3833528-3833309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
17, 38
               

               
Conread position:
               
651-931
               

               
Cow position:
               
chr11:63909833-63909561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
47, 66
               

               
Conread position:
               
651-939
               

               
Cow position:
               
chr11:2092164-2092445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
113, 70
               

               
Conread position:
               
651-956
               

               
Cow position:
               
chr11:82940797-82940493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
47, 65
               

               
Conread position:
               
651-974
               

               
Cow position:
               
chr11:30830791-30830467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
112, 270
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chr11:27746750-27747084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
94, 5
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chr11:41986219-41985878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
47, 5
               

               
Conread position:
               
651-1003
               

               
Cow position:
               
chr11:65762775-65762404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 0
               

               
Conread position:
               
651-1007
               

               
Cow position:
               
chr11:71868784-71868421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
41, 301
               

               
Conread position:
               
652-875
               

               
Cow position:
               
chr11:38874578-38874349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
652-989
               

               
Cow position:
               
chr11:14470195-14470527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
653-927
               

               
Cow position:
               
chr11:83230563-83230295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
112, 11
               

               
Conread position:
               
653-931
               

               
Cow position:
               
chr11:38577948-38577669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 90
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr11:6234053-6233708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
39, 52
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr11:67600609-67600948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
111, 245
               

               
Conread position:
               
653-1003
               

               
Cow position:
               
chr11:64334684-64335015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
654-874
               

               
Cow position:
               
chr11:41176122-41175897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
110, 0
               

               
Conread position:
               
654-993
               

               
Cow position:
               
chr11:77319240-77319582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 177
               

               
Conread position:
               
655-940
               

               
Cow position:
               
chr11:16907214-16906934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
109, 43
               

               
Conread position:
               
657-921
               

               
Cow position:
               
chr11:75874921-75874655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
130, 88
               

               
Conread position:
               
661-989
               

               
Cow position:
               
chr11:80556055-80556384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 256
               

               
Conread position:
               
661-993
               

               
Cow position:
               
chr11:48295867-48296195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 57
               

               
Conread position:
               
661-993
               

               
Cow position:
               
chr11:81135327-81134999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
139, 16
               

               
Conread position:
               
663-993
               

               
Cow position:
               
chr11:6245158-6245491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
32, 132
               

               
Conread position:
               
664-921
               

               
Cow position:
               
chr11:16540700-16540961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
100, 52
               

               
Conread position:
               
664-974
               

               
Cow position:
               
chr11:56187457-56187758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
100, 74
               

               
Conread position:
               
664-993
               

               
Cow position:
               
chr11:11646907-11647267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
664-993
               

               
Cow position:
               
chr11:42296780-42296457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
100, 116
               

               
Conread position:
               
665-1005
               

               
Cow position:
               
chr11:71390725-71390391 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
98, 166
               

               
Conread position:
               
667-968
               

               
Cow position:
               
chr11:2576063-2575763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
101, 93
               

               
Conread position:
               
667-993
               

               
Cow position:
               
chr11:3175531-3175838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
669-913
               

               
Cow position:
               
chr11:55494522-55494770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
95, 75
               

               
Conread position:
               
669-930
               

               
Cow position:
               
chr11:62151042-62150787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
95, 46
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chr11:51729131-51729444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
131, 62
               

               
Conread position:
               
669-999
               

               
Cow position:
               
chr11:46580198-46580534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
669-1004
               

               
Cow position:
               
chr11:39499201-39499534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 49
               

               
Conread position:
               
669-1004
               

               
Cow position:
               
chr11:45434929-45435256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
87, 70
               

               
Conread position:
               
670-993
               

               
Cow position:
               
chr11:44222734-44223051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
673-820
               

               
Cow position:
               
chr11:70741129-70740982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
127, 100
               

               
Conread position:
               
673-989
               

               
Cow position:
               
chr11:5201803-5201480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
673-993
               

               
Cow position:
               
chr11:28993885-28993578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
178, 95
               

               
Conread position:
               
673-1004
               

               
Cow position:
               
chr11:35213314-35212990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
91, 20
               

               
Conread position:
               
674-987
               

               
Cow position:
               
chr11:62663373-62663078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
674-993
               

               
Cow position:
               
chr11:49873039-49872717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
48, 21
               

               
Conread position:
               
675-997
               

               
Cow position:
               
chr11:40395288-40395610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
18, 11
               

               
Conread position:
               
676-978
               

               
Cow position:
               
chr11:17493328-17493638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
88, 68
               

               
Conread position:
               
676-993
               

               
Cow position:
               
chr11:70250775-70251084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
124, 41
               

               
Conread position:
               
676-1001
               

               
Cow position:
               
chr11:18851768-18852081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
145, 86
               

               
Conread position:
               
679-992
               

               
Cow position:
               
chr11:63435370-63435691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
85, 133
               

               
Conread position:
               
680-989
               

               
Cow position:
               
chr11:23407315-23407626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
84, 242
               

               
Conread position:
               
680-989
               

               
Cow position:
               
chr11:49057256-49057549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
84, 108
               

               
Conread position:
               
683-938
               

               
Cow position:
               
chr11:69075765-69076025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
81, 146
               

               
Conread position:
               
683-989
               

               
Cow position:
               
chr11:64009575-64009892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
15, 97
               

               
Conread position:
               
685-919
               

               
Cow position:
               
chr11:65767056-65767296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
686-993
               

               
Cow position:
               
chr11:33825031-33824744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
78, 141
               

               
Conread position:
               
687-991
               

               
Cow position:
               
chr11:69977838-69978133 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
77, 51
               

               
Conread position:
               
687-993
               

               
Cow position:
               
chr11:47772531-47772212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
93, 34
               

               
Conread position:
               
687-993
               

               
Cow position:
               
chr11:67615382-67615082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chr11:261399-261087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
161, 74
               

               
Conread position:
               
691-988
               

               
Cow position:
               
chr11:62788993-62789292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
691-992
               

               
Cow position:
               
chr11:76652887-76653190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
691-993
               

               
Cow position:
               
chr11:48672579-48672884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
80, 25
               

               
Conread position:
               
693-993
               

               
Cow position:
               
chr11:67615062-67614755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
96, 73
               

               
Conread position:
               
693-1003
               

               
Cow position:
               
chr11:40608731-40608413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
7, 257
               

               
Conread position:
               
695-875
               

               
Cow position:
               
chr11:21497390-21497575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 92
               

               
Conread position:
               
698-992
               

               
Cow position:
               
chr11:70756353-70756643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
66, 60
               

               
Conread position:
               
702-921
               

               
Cow position:
               
chr11:6194081-6194303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
72, 82
               

               
Conread position:
               
704-993
               

               
Cow position:
               
chr11:8461893-8462175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
147, 74
               

               
Conread position:
               
709-992
               

               
Cow position:
               
chr11:63999207-63998921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
714-974
               

               
Cow position:
               
chr11:31410997-31410729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
28, 122
               

               
Conread position:
               
721-974
               

               
Cow position:
               
chr11:30493893-30494142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
44, 68
               

               
Conread position:
               
722-992
               

               
Cow position:
               
chr11:39060705-39060436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-32
               

               
Alignm gaps (pig, cow):
               
22, 47
               

               
Conread position:
               
728-989
               

               
Cow position:
               
chr11:42160159-42159896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
36, 157
               

               
Conread position:
               
730-993
               

               
Cow position:
               
chr11:80564196-80564467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
34, 177
               

               
Conread position:
               
734-993
               

               
Cow position:
               
chr11:8437782-8437520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
30, 49
               

               
Conread position:
               
738-997
               

               
Cow position:
               
chr11:47724814-47725063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 46
               

               
Conread position:
               
739-997
               

               
Cow position:
               
chr11:17676458-17676201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
61, 29
               

               
Conread position:
               
740-936
               

               
Cow position:
               
chr11:35803047-35803251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
24, 90
               

               
Conread position:
               
740-992
               

               
Cow position:
               
chr11:33409347-33409097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
60, 28
               

               
Conread position:
               
745-989
               

               
Cow position:
               
chr11:62813033-62812787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
745-993
               

               
Cow position:
               
chr11:46922980-46922717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
19, 199
               

               
Conread position:
               
745-993
               

               
Cow position:
               
chr11:63866736-63866491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 34
               

               
Conread position:
               
745-993
               

               
Cow position:
               
chr11:72292461-72292731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
746-993
               

               
Cow position:
               
chr11:17721885-17721631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
750-993
               

               
Cow position:
               
chr11:4637250-4637005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
14, 132
               

               
Conread position:
               
763-989
               

               
Cow position:
               
chr11:25119996-25119770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
13, 60
               

               
Conread position:
               
763-993
               

               
Cow position:
               
chr11:1932556-1932318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
769-928
               

               
Cow position:
               
chr11:36329090-36328931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
31, 16
               

               
Conread position:
               
786-993
               

               
Cow position:
               
chr11:21885793-21886000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
794-992
               

               
Cow position:
               
chr11:15382535-15382326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
6, 0
               

               
Conread position:
               
795-993
               

               
Cow position:
               
chr11:30895034-30894833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
61, 145
               

               
Conread position:
               
799-989
               

               
Cow position:
               
chr11:63165673-63165485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
59, 116
               

               
Conread position:
               
812-993
               

               
Cow position:
               
chr11:30986628-30986806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
72, 64
               

               
Conread position:
               
856-995
               

               
Cow position:
               
chr11:70821078-70821216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
20, 28
               
Show alignments to all cow chromosomes.