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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8025C15.5
        

               
Conread position:
               
168-285
               

               
Cow position:
               
chr21:12471005-12470887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
326-647
               

               
Cow position:
               
chr21:12455462-12455153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 33
               

               
Conread position:
               
627-995
               

               
Cow position:
               
chr21:37790120-37789750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 23
               

               
Conread position:
               
644-1003
               

               
Cow position:
               
chr21:11740217-11739859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 66
               

               
Conread position:
               
646-880
               

               
Cow position:
               
chr21:44515165-44515403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
62, 21
               

               
Conread position:
               
646-993
               

               
Cow position:
               
chr21:17560028-17559666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
135, 122
               

               
Conread position:
               
647-937
               

               
Cow position:
               
chr21:27624611-27624896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
177, 127
               

               
Conread position:
               
647-987
               

               
Cow position:
               
chr21:42135718-42135375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 272
               

               
Conread position:
               
647-989
               

               
Cow position:
               
chr21:41621026-41621374 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
117, 234
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr21:37479862-37480214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
117, 14
               

               
Conread position:
               
648-786
               

               
Cow position:
               
chr21:4568188-4568325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
648-787
               

               
Cow position:
               
chr21:393928-394061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
648-791
               

               
Cow position:
               
chr21:41957273-41957129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
648-807
               

               
Cow position:
               
chr21:21216238-21216085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
116, 46
               

               
Conread position:
               
648-814
               

               
Cow position:
               
chr21:912064-911896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
116, 132
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chr21:21077229-21077403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
152, 0
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chr21:39888845-39888672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
114, 133
               

               
Conread position:
               
648-824
               

               
Cow position:
               
chr21:12960996-12960818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 104
               

               
Conread position:
               
648-837
               

               
Cow position:
               
chr21:18041945-18041754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-36
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
648-840
               

               
Cow position:
               
chr21:5985415-5985222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 106
               

               
Conread position:
               
648-844
               

               
Cow position:
               
chr21:23150118-23149921 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
648-845
               

               
Cow position:
               
chr21:2904570-2904377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
116, 71
               

               
Conread position:
               
648-849
               

               
Cow position:
               
chr21:23192611-23192404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
648-867
               

               
Cow position:
               
chr21:17856450-17856670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
114, 46
               

               
Conread position:
               
648-872
               

               
Cow position:
               
chr21:18414953-18415183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 202
               

               
Conread position:
               
648-872
               

               
Cow position:
               
chr21:45330701-45330476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 148
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:724985-724751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:10601471-10601241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
118, 69
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:15911302-15911534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:19363557-19363325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
70, 16
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:20418782-20418548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:24642421-24642654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr21:39401497-39401724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
148, 125
               

               
Conread position:
               
648-876
               

               
Cow position:
               
chr21:33997323-33997092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
116, 38
               

               
Conread position:
               
648-913
               

               
Cow position:
               
chr21:2679459-2679723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 101
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr21:8206675-8206948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
116, 52
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr21:42348771-42348518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
208, 116
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chr21:45355739-45356011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
200, 109
               

               
Conread position:
               
648-920
               

               
Cow position:
               
chr21:33210105-33210367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
205, 120
               

               
Conread position:
               
648-921
               

               
Cow position:
               
chr21:28190935-28191212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
648-923
               

               
Cow position:
               
chr21:12723063-12723332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
149, 70
               

               
Conread position:
               
648-924
               

               
Cow position:
               
chr21:44671660-44671927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
648-925
               

               
Cow position:
               
chr21:25764541-25764820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-926
               

               
Cow position:
               
chr21:12801844-12801567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-928
               

               
Cow position:
               
chr21:31691385-31691670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
116, 142
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chr21:1058983-1059262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chr21:24598564-24598843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 88
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr21:18790657-18790375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr21:36297393-36297681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
116, 274
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chr21:33263752-33264036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr21:13128191-13127902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr21:26244826-26245113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr21:30250287-30250005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr21:33350649-33350940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-36
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr21:42384412-42384708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr21:5392636-5392337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
99, 38
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr21:7582003-7581705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
100, 129
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr21:23322177-23321873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
648-953
               

               
Cow position:
               
chr21:30990367-30990076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-956
               

               
Cow position:
               
chr21:9990419-9990724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
132, 70
               

               
Conread position:
               
648-956
               

               
Cow position:
               
chr21:45330045-45329741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
55, 125
               

               
Conread position:
               
648-961
               

               
Cow position:
               
chr21:21169588-21169275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
648-968
               

               
Cow position:
               
chr21:9416149-9416475 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
44, 167
               

               
Conread position:
               
648-978
               

               
Cow position:
               
chr21:28734009-28733676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
124, 46
               

               
Conread position:
               
648-986
               

               
Cow position:
               
chr21:19196260-19195918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chr21:27521430-27521097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
50, 108
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr21:5898491-5898162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
648-991
               

               
Cow position:
               
chr21:641489-641832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 25
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:3361108-3360767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
124, 26
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:3585457-3585115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
149, 15
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:10561681-10561336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
149, 259
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:12462067-12461720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
116, 240
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:13048294-13047941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
49, 61
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:19083693-19083336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
45, 196
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:23535616-23535962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
50, 72
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr21:32297604-32297259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
202, 91
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:802392-802073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
207, 72
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:6051409-6051755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:6833951-6834300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:14452139-14452483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
150, 108
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:17875289-17874940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:20152850-20153207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 146
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:20160586-20160928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
125, 49
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:23586783-23587122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
146, 250
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:27229892-27229553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 248
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:27810311-27810642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
271, 120
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:27863613-27863269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:29002255-29001896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
120, 263
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:32559452-32559121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 29
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:33982902-33982564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 47
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:34010493-34010146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
118, 47
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:34653980-34654320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 53
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:37299372-37299710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
116, 45
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:41155766-41156121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 100
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:41974472-41974117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
116, 136
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:44825982-44825625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
116, 91
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr21:46849220-46848883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr21:6713623-6713270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
26, 74
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr21:32339835-32339491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
648-1002
               

               
Cow position:
               
chr21:10004979-10004624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr21:957575-957929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr21:29069426-29069062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr21:24858218-24858579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
118, 90
               

               
Conread position:
               
648-1006
               

               
Cow position:
               
chr21:11645062-11644701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 21
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr21:16914678-16915049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
45, 185
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chr21:23980279-23979909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
649-757
               

               
Cow position:
               
chr21:23683452-23683560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
649-777
               

               
Cow position:
               
chr21:14515753-14515882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
13, 119
               

               
Conread position:
               
649-797
               

               
Cow position:
               
chr21:12617041-12617191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
75, 68
               

               
Conread position:
               
649-845
               

               
Cow position:
               
chr21:9360349-9360536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
649-871
               

               
Cow position:
               
chr21:13488427-13488657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
115, 16
               

               
Conread position:
               
649-873
               

               
Cow position:
               
chr21:35569475-35569252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 59
               

               
Conread position:
               
649-888
               

               
Cow position:
               
chr21:20192800-20193041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
649-894
               

               
Cow position:
               
chr21:43357357-43357103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
49, 169
               

               
Conread position:
               
649-902
               

               
Cow position:
               
chr21:18845111-18844851 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 63
               

               
Conread position:
               
649-902
               

               
Cow position:
               
chr21:18850322-18850063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
115, 28
               

               
Conread position:
               
649-921
               

               
Cow position:
               
chr21:395774-396047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 132
               

               
Conread position:
               
649-921
               

               
Cow position:
               
chr21:28626145-28626417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
115, 15
               

               
Conread position:
               
649-931
               

               
Cow position:
               
chr21:4399701-4399992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
49, 152
               

               
Conread position:
               
649-934
               

               
Cow position:
               
chr21:22465101-22465380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
88, 100
               

               
Conread position:
               
649-937
               

               
Cow position:
               
chr21:29484885-29485175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 13
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr21:36795505-36795804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 12
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr21:46264076-46264369 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
113, 85
               

               
Conread position:
               
649-962
               

               
Cow position:
               
chr21:8549579-8549902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
17, 169
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr21:9310947-9311301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr21:29214247-29213912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
158, 55
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr21:30592400-30592068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
115, 87
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr21:42500940-42501298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr21:7825274-7824941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
16, 71
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr21:22860903-22861241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
115, 222
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr21:40589575-40589231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 47
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr21:46940-47297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
17, 183
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr21:27569256-27568909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
130, 55
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr21:41590655-41590316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
126, 18
               

               
Conread position:
               
650-890
               

               
Cow position:
               
chr21:18842329-18842088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
114, 54
               

               
Conread position:
               
650-920
               

               
Cow position:
               
chr21:18828401-18828124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
650-992
               

               
Cow position:
               
chr21:44658487-44658810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
226, 94
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr21:13035138-13034785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 67
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr21:17183825-17184168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 117
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr21:20260416-20260047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr21:23822072-23822402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
201, 129
               

               
Conread position:
               
651-789
               

               
Cow position:
               
chr21:45375529-45375668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
113, 43
               

               
Conread position:
               
651-891
               

               
Cow position:
               
chr21:34391069-34390825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
113, 129
               

               
Conread position:
               
651-919
               

               
Cow position:
               
chr21:9940288-9940012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
70, 251
               

               
Conread position:
               
651-938
               

               
Cow position:
               
chr21:42414195-42413900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
23, 71
               

               
Conread position:
               
651-946
               

               
Cow position:
               
chr21:29978850-29978553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
122, 60
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chr21:30222251-30222588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
113, 14
               

               
Conread position:
               
651-992
               

               
Cow position:
               
chr21:38900684-38901012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chr21:18800623-18800280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
137, 86
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chr21:20262427-20262097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
651-1004
               

               
Cow position:
               
chr21:10263942-10264296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
113, 12
               

               
Conread position:
               
652-821
               

               
Cow position:
               
chr21:16612532-16612702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
112, 61
               

               
Conread position:
               
652-910
               

               
Cow position:
               
chr21:35354440-35354702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
112, 150
               

               
Conread position:
               
652-993
               

               
Cow position:
               
chr21:45906714-45906371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
111, 134
               

               
Conread position:
               
653-910
               

               
Cow position:
               
chr21:38121009-38121270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
111, 83
               

               
Conread position:
               
653-947
               

               
Cow position:
               
chr21:13365246-13365551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
91, 185
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr21:6997846-6998191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr21:30835270-30835616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
40, 177
               

               
Conread position:
               
653-996
               

               
Cow position:
               
chr21:15584512-15584170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 47
               

               
Conread position:
               
653-1001
               

               
Cow position:
               
chr21:7673034-7673371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
111, 65
               

               
Conread position:
               
653-1003
               

               
Cow position:
               
chr21:643235-643585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 58
               

               
Conread position:
               
656-989
               

               
Cow position:
               
chr21:47719387-47719058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
108, 15
               

               
Conread position:
               
656-993
               

               
Cow position:
               
chr21:22210333-22209993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
152, 124
               

               
Conread position:
               
663-1004
               

               
Cow position:
               
chr21:13840240-13840589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
34, 209
               

               
Conread position:
               
664-989
               

               
Cow position:
               
chr21:81998-82305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
187, 100
               

               
Conread position:
               
665-1004
               

               
Cow position:
               
chr21:7394302-7394630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 13
               

               
Conread position:
               
668-890
               

               
Cow position:
               
chr21:16187885-16187658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
96, 76
               

               
Conread position:
               
669-918
               

               
Cow position:
               
chr21:47764191-47763941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
173, 116
               

               
Conread position:
               
670-1002
               

               
Cow position:
               
chr21:4280747-4280417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
94, 57
               

               
Conread position:
               
672-1002
               

               
Cow position:
               
chr21:1511218-1511545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
85, 174
               

               
Conread position:
               
673-1005
               

               
Cow position:
               
chr21:8349256-8349585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
7e-35
               

               
Alignm gaps (pig, cow):
               
91, 158
               

               
Conread position:
               
674-993
               

               
Cow position:
               
chr21:44214053-44214361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
90, 224
               

               
Conread position:
               
676-921
               

               
Cow position:
               
chr21:45262881-45262630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
49, 69
               

               
Conread position:
               
676-997
               

               
Cow position:
               
chr21:30849017-30848694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
88, 226
               

               
Conread position:
               
676-1004
               

               
Cow position:
               
chr21:44251904-44251580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
677-970
               

               
Cow position:
               
chr21:16569833-16570122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
81, 92
               

               
Conread position:
               
677-1005
               

               
Cow position:
               
chr21:23672684-23673007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
87, 21
               

               
Conread position:
               
686-875
               

               
Cow position:
               
chr21:297694-297888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
78, 34
               

               
Conread position:
               
686-989
               

               
Cow position:
               
chr21:18060016-18059713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
7, 53
               

               
Conread position:
               
687-993
               

               
Cow position:
               
chr21:12339581-12339867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
78, 32
               

               
Conread position:
               
687-993
               

               
Cow position:
               
chr21:13656687-13656384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
77, 47
               

               
Conread position:
               
688-993
               

               
Cow position:
               
chr21:868982-868669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
76, 70
               

               
Conread position:
               
691-997
               

               
Cow position:
               
chr21:47714057-47713753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
73, 24
               

               
Conread position:
               
695-993
               

               
Cow position:
               
chr21:41522457-41522163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
696-987
               

               
Cow position:
               
chr21:19060136-19059847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
155, 72
               

               
Conread position:
               
696-1004
               

               
Cow position:
               
chr21:28919573-28919270 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
68, 189
               

               
Conread position:
               
699-993
               

               
Cow position:
               
chr21:22014141-22014441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
65, 57
               

               
Conread position:
               
702-993
               

               
Cow position:
               
chr21:742245-742524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
64, 17
               

               
Conread position:
               
708-947
               

               
Cow position:
               
chr21:29014597-29014355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
721-1001
               

               
Cow position:
               
chr21:28030264-28030537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
43, 108
               

               
Conread position:
               
721-1005
               

               
Cow position:
               
chr21:14126264-14126536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
135, 13
               

               
Conread position:
               
722-989
               

               
Cow position:
               
chr21:46599337-46599604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 21
               

               
Conread position:
               
724-993
               

               
Cow position:
               
chr21:12354714-12354452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
68, 21
               

               
Conread position:
               
728-1008
               

               
Cow position:
               
chr21:829227-828946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
36, 10
               

               
Conread position:
               
739-931
               

               
Cow position:
               
chr21:30980584-30980387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
739-993
               

               
Cow position:
               
chr21:21615768-21616026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
30, 165
               

               
Conread position:
               
742-993
               

               
Cow position:
               
chr21:19240880-19240628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 171
               

               
Conread position:
               
748-993
               

               
Cow position:
               
chr21:41287792-41287546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
18, 178
               

               
Conread position:
               
762-993
               

               
Cow position:
               
chr21:17252959-17252727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
39, 23
               

               
Conread position:
               
771-989
               

               
Cow position:
               
chr21:20163734-20163953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
29, 169
               

               
Conread position:
               
772-993
               

               
Cow position:
               
chr21:22850949-22851165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
66, 142
               

               
Conread position:
               
775-1005
               

               
Cow position:
               
chr21:24875381-24875614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
13, 156
               

               
Conread position:
               
776-993
               

               
Cow position:
               
chr21:16498550-16498765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-33
               

               
Alignm gaps (pig, cow):
               
31, 140
               

               
Conread position:
               
780-993
               

               
Cow position:
               
chr21:6851207-6851415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
23, 117
               

               
Conread position:
               
781-993
               

               
Cow position:
               
chr21:39393784-39393999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
19, 120
               

               
Conread position:
               
799-993
               

               
Cow position:
               
chr21:11182608-11182799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
57, 96
               

               
Conread position:
               
799-1003
               

               
Cow position:
               
chr21:40820798-40820590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
54, 103
               

               
Conread position:
               
802-993
               

               
Cow position:
               
chr21:8506488-8506297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
802-993
               

               
Cow position:
               
chr21:8509376-8509185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
841-1003
               

               
Cow position:
               
chr21:40930375-40930216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
854-993
               

               
Cow position:
               
chr21:44732931-44732793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
68, 0
               
Show alignments to all cow chromosomes.