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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8025C15.5
        

               
Conread position:
               
605-992
               

               
Cow position:
               
chr3:23408576-23408203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
7, 37
               

               
Conread position:
               
627-1003
               

               
Cow position:
               
chr3:81087825-81087464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
14, 8
               

               
Conread position:
               
637-945
               

               
Cow position:
               
chr3:67744818-67744513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
213, 74
               

               
Conread position:
               
639-909
               

               
Cow position:
               
chr3:74502514-74502248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
53, 7
               

               
Conread position:
               
645-921
               

               
Cow position:
               
chr3:59208627-59208886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
645-951
               

               
Cow position:
               
chr3:20678022-20677721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
80, 72
               

               
Conread position:
               
646-995
               

               
Cow position:
               
chr3:59610908-59610555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 111
               

               
Conread position:
               
647-875
               

               
Cow position:
               
chr3:69750886-69750665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
129, 54
               

               
Conread position:
               
647-931
               

               
Cow position:
               
chr3:60265427-60265153 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
80, 127
               

               
Conread position:
               
647-931
               

               
Cow position:
               
chr3:61143912-61144197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 17
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr3:57273881-57274220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
195, 60
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr3:61224918-61224587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
134, 28
               

               
Conread position:
               
647-993
               

               
Cow position:
               
chr3:73394935-73395277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
46, 139
               

               
Conread position:
               
647-1003
               

               
Cow position:
               
chr3:6182385-6182060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
153, 82
               

               
Conread position:
               
648-775
               

               
Cow position:
               
chr3:58383784-58383910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
122, 81
               

               
Conread position:
               
648-780
               

               
Cow position:
               
chr3:49218499-49218364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
648-781
               

               
Cow position:
               
chr3:31501167-31501301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
648-788
               

               
Cow position:
               
chr3:26894477-26894618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
648-804
               

               
Cow position:
               
chr3:22924592-22924438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
152, 90
               

               
Conread position:
               
648-807
               

               
Cow position:
               
chr3:16004174-16004015 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
89
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
648-811
               

               
Cow position:
               
chr3:35283278-35283110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
97, 137
               

               
Conread position:
               
648-814
               

               
Cow position:
               
chr3:27212178-27212346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
648-828
               

               
Cow position:
               
chr3:77496637-77496825 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
648-854
               

               
Cow position:
               
chr3:81277883-81277676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
116, 139
               

               
Conread position:
               
648-857
               

               
Cow position:
               
chr3:21341146-21340936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 171
               

               
Conread position:
               
648-871
               

               
Cow position:
               
chr3:2216179-2216410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 165
               

               
Conread position:
               
648-871
               

               
Cow position:
               
chr3:49650200-49650430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
648-871
               

               
Cow position:
               
chr3:53112989-53113217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
648-872
               

               
Cow position:
               
chr3:22820384-22820614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-873
               

               
Cow position:
               
chr3:10347171-10347395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
115, 122
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr3:2198698-2198928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr3:56301528-56301313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chr3:74878774-74878544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
648-875
               

               
Cow position:
               
chr3:73759700-73759471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
110, 133
               

               
Conread position:
               
648-890
               

               
Cow position:
               
chr3:5374153-5374389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
648-890
               

               
Cow position:
               
chr3:75711127-75711367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
66, 74
               

               
Conread position:
               
648-900
               

               
Cow position:
               
chr3:23445078-23444817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
44, 97
               

               
Conread position:
               
648-905
               

               
Cow position:
               
chr3:7940740-7940481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
116, 198
               

               
Conread position:
               
648-917
               

               
Cow position:
               
chr3:28908383-28908115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
139, 15
               

               
Conread position:
               
648-917
               

               
Cow position:
               
chr3:66292363-66292088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
648-918
               

               
Cow position:
               
chr3:116013-116279 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 74
               

               
Conread position:
               
648-918
               

               
Cow position:
               
chr3:70401718-70401985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
116, 55
               

               
Conread position:
               
648-918
               

               
Cow position:
               
chr3:82460995-82461268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 20
               

               
Conread position:
               
648-920
               

               
Cow position:
               
chr3:38691590-38691315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
50, 21
               

               
Conread position:
               
648-920
               

               
Cow position:
               
chr3:62826803-62826527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
77, 67
               

               
Conread position:
               
648-922
               

               
Cow position:
               
chr3:31047135-31046858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
116, 143
               

               
Conread position:
               
648-922
               

               
Cow position:
               
chr3:83815973-83815695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
115, 46
               

               
Conread position:
               
648-924
               

               
Cow position:
               
chr3:525166-525441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
116, 88
               

               
Conread position:
               
648-927
               

               
Cow position:
               
chr3:3738304-3738580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
152, 64
               

               
Conread position:
               
648-928
               

               
Cow position:
               
chr3:27697163-27696880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
45, 139
               

               
Conread position:
               
648-929
               

               
Cow position:
               
chr3:81371463-81371750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
114, 70
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chr3:57624279-57624566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 66
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chr3:63269041-63269323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr3:45534480-45534196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
110, 70
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chr3:55836009-55835717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
107, 274
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chr3:49327757-49328048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:13507284-13507579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:15752815-15752525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
114, 63
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:17447792-17447504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
152, 31
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:18066951-18067243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
116, 127
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:48296525-48296807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:52863370-52863072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 249
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:73467438-73467742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
45, 70
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chr3:80071942-80072238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 182
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chr3:15506267-15506561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 88
               

               
Conread position:
               
648-944
               

               
Cow position:
               
chr3:50614453-50614757 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
116, 294
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr3:57760314-57760613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chr3:73443271-73442977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
152, 112
               

               
Conread position:
               
648-956
               

               
Cow position:
               
chr3:73708864-73709172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
648-966
               

               
Cow position:
               
chr3:70565922-70565599 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
145, 120
               

               
Conread position:
               
648-968
               

               
Cow position:
               
chr3:11063198-11063504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
155, 87
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr3:32584972-32585288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
116, 15
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr3:74234012-74234328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chr3:83455332-83455010 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
648-977
               

               
Cow position:
               
chr3:44101785-44102113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
648-978
               

               
Cow position:
               
chr3:54945944-54946271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 273
               

               
Conread position:
               
648-979
               

               
Cow position:
               
chr3:74134521-74134855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
112, 70
               

               
Conread position:
               
648-986
               

               
Cow position:
               
chr3:69416968-69416623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 240
               

               
Conread position:
               
648-986
               

               
Cow position:
               
chr3:83845720-83846050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
68, 238
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chr3:39970052-39969707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 276
               

               
Conread position:
               
648-988
               

               
Cow position:
               
chr3:26970643-26970968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
648-988
               

               
Cow position:
               
chr3:53150145-53150490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
648-988
               

               
Cow position:
               
chr3:75080586-75080909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
116, 80
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:2396963-2396637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
116, 99
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:9641381-9641713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
116, 127
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:14552694-14553030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
152, 83
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:17222328-17221975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
114, 87
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:22232836-22232510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
121, 133
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:36570229-36569880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:53221830-53222170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 100
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:54374045-54373699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 122
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:74079823-74079480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 269
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chr3:83474563-83474912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr3:12705730-12705386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
116, 239
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr3:13353177-13353525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 293
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr3:45647496-45647827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chr3:70609442-70609786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 83
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:2506661-2506314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:4461673-4461328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:7337954-7337625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
143, 64
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:8060943-8061282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
124, 274
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:13302032-13301687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:17937019-17936685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
141, 69
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:17957278-17957623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 237
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:18393572-18393240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
175, 105
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:25690605-25690962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
44, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:26065821-26066149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
152, 20
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:29813063-29813388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
249, 16
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:38828582-38828913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
26, 128
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:43233323-43233665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
45, 147
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:48362901-48363231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
7e-40
               

               
Alignm gaps (pig, cow):
               
116, 36
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:49119211-49118868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:49461117-49460764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:50768498-50768841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 123
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:52652258-52651918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 14
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:53046841-53046496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
44, 20
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:53592881-53592524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 243
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:53790721-53790380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 252
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:54506525-54506868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:55124462-55124123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:55970324-55970677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
50, 16
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:57754664-57754313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
49, 108
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:60597361-60597699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
50, 19
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:61857316-61857671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
49, 217
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:65968974-65969336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:66900926-66900565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
51, 98
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:67930366-67930008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
159, 46
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:72473727-72474084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
45, 139
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:74533168-74533496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
122, 86
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:74754144-74754477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
116, 69
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:75687623-75687275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
44, 133
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chr3:78092690-78092349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
139, 71
               

               
Conread position:
               
648-995
               

               
Cow position:
               
chr3:17456449-17456103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
45, 68
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr3:18686723-18687067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
159, 134
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr3:23169250-23168902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
116, 89
               

               
Conread position:
               
648-997
               

               
Cow position:
               
chr3:80564779-80565128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
116, 278
               

               
Conread position:
               
648-1001
               

               
Cow position:
               
chr3:15158857-15159204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
79, 125
               

               
Conread position:
               
648-1002
               

               
Cow position:
               
chr3:74600932-74601283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr3:2674845-2675205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
45, 29
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr3:23105550-23105192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
114, 273
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr3:44932328-44932685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 226
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chr3:64281116-64280766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
140, 125
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr3:55319087-55318725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chr3:71237972-71238323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
152, 130
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr3:4319530-4319895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
50, 69
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chr3:65236839-65237198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
44, 118
               

               
Conread position:
               
648-1007
               

               
Cow position:
               
chr3:68708188-68707844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
648-1007
               

               
Cow position:
               
chr3:68881296-68880953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
649-812
               

               
Cow position:
               
chr3:61191107-61190944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
115, 80
               

               
Conread position:
               
649-821
               

               
Cow position:
               
chr3:74409301-74409474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 17
               

               
Conread position:
               
649-844
               

               
Cow position:
               
chr3:5851107-5850917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
113, 81
               

               
Conread position:
               
649-873
               

               
Cow position:
               
chr3:65800412-65800629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
151, 56
               

               
Conread position:
               
649-874
               

               
Cow position:
               
chr3:56523611-56523401 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
649-875
               

               
Cow position:
               
chr3:66610026-66609798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
115, 131
               

               
Conread position:
               
649-887
               

               
Cow position:
               
chr3:34937660-34937902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
115, 199
               

               
Conread position:
               
649-900
               

               
Cow position:
               
chr3:11711773-11712036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 141
               

               
Conread position:
               
649-903
               

               
Cow position:
               
chr3:61840095-61840349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
76, 16
               

               
Conread position:
               
649-920
               

               
Cow position:
               
chr3:19006482-19006751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
164, 13
               

               
Conread position:
               
649-921
               

               
Cow position:
               
chr3:29887605-29887328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
115, 95
               

               
Conread position:
               
649-928
               

               
Cow position:
               
chr3:73764379-73764101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
48, 79
               

               
Conread position:
               
649-930
               

               
Cow position:
               
chr3:55272228-55271947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
649-936
               

               
Cow position:
               
chr3:67704359-67704652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
113, 281
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr3:12712102-12711806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
649-939
               

               
Cow position:
               
chr3:56059623-56059918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 235
               

               
Conread position:
               
649-947
               

               
Cow position:
               
chr3:2680333-2680630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
42, 162
               

               
Conread position:
               
649-987
               

               
Cow position:
               
chr3:68627864-68627531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
115, 68
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chr3:16752436-16752096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
119, 60
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chr3:45211114-45211465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
43, 75
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr3:27274348-27274689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 70
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr3:38863932-38864280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 279
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr3:56476497-56476836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
109, 89
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chr3:57764044-57764375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
649-995
               

               
Cow position:
               
chr3:75158176-75158519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
124, 222
               

               
Conread position:
               
649-996
               

               
Cow position:
               
chr3:59597002-59597338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
115, 23
               

               
Conread position:
               
649-997
               

               
Cow position:
               
chr3:26739603-26739258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
48, 208
               

               
Conread position:
               
649-997
               

               
Cow position:
               
chr3:30940637-30940971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
207, 18
               

               
Conread position:
               
649-1003
               

               
Cow position:
               
chr3:52608004-52608350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 89
               

               
Conread position:
               
649-1003
               

               
Cow position:
               
chr3:63315952-63316300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 90
               

               
Conread position:
               
649-1006
               

               
Cow position:
               
chr3:7331296-7330960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
151, 117
               

               
Conread position:
               
649-1008
               

               
Cow position:
               
chr3:55189939-55189569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 59
               

               
Conread position:
               
650-913
               

               
Cow position:
               
chr3:72675910-72676175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 118
               

               
Conread position:
               
650-919
               

               
Cow position:
               
chr3:8393757-8394032 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
114, 17
               

               
Conread position:
               
650-989
               

               
Cow position:
               
chr3:15052134-15051794 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 257
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chr3:53429078-53428756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
206, 71
               

               
Conread position:
               
650-1002
               

               
Cow position:
               
chr3:22676269-22675936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
115, 11
               

               
Conread position:
               
651-900
               

               
Cow position:
               
chr3:70895869-70896119 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
149, 83
               

               
Conread position:
               
651-903
               

               
Cow position:
               
chr3:58969082-58968829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
36, 108
               

               
Conread position:
               
651-979
               

               
Cow position:
               
chr3:53095117-53094780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
46, 155
               

               
Conread position:
               
651-987
               

               
Cow position:
               
chr3:53270647-53270989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
46, 230
               

               
Conread position:
               
651-992
               

               
Cow position:
               
chr3:45881728-45882060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
149, 67
               

               
Conread position:
               
651-1001
               

               
Cow position:
               
chr3:76268161-76267804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
48, 11
               

               
Conread position:
               
651-1004
               

               
Cow position:
               
chr3:210138-210495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
46, 13
               

               
Conread position:
               
651-1004
               

               
Cow position:
               
chr3:30179902-30180256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
47, 10
               

               
Conread position:
               
652-989
               

               
Cow position:
               
chr3:78077013-78077348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
148, 79
               

               
Conread position:
               
652-993
               

               
Cow position:
               
chr3:31419520-31419857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
652-993
               

               
Cow position:
               
chr3:51234277-51233942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
45, 172
               

               
Conread position:
               
653-901
               

               
Cow position:
               
chr3:26553895-26553643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 68
               

               
Conread position:
               
653-932
               

               
Cow position:
               
chr3:79292649-79292927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
13, 81
               

               
Conread position:
               
653-980
               

               
Cow position:
               
chr3:65413460-65413125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
12, 136
               

               
Conread position:
               
653-992
               

               
Cow position:
               
chr3:68586844-68587179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
111, 15
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:54782196-54781831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
111, 105
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:59000927-59000601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
111, 54
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:70762302-70761961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
127, 273
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:75107615-75107934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
204, 83
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:75479826-75480160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
653-993
               

               
Cow position:
               
chr3:76922842-76922511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
111, 155
               

               
Conread position:
               
653-1002
               

               
Cow position:
               
chr3:16333621-16333975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
42, 66
               

               
Conread position:
               
654-992
               

               
Cow position:
               
chr3:36418644-36418326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
184, 67
               

               
Conread position:
               
655-993
               

               
Cow position:
               
chr3:62046485-62046833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
109, 83
               

               
Conread position:
               
657-939
               

               
Cow position:
               
chr3:26874415-26874700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
53, 21
               

               
Conread position:
               
657-980
               

               
Cow position:
               
chr3:25944906-25945244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
40, 284
               

               
Conread position:
               
657-986
               

               
Cow position:
               
chr3:55819572-55819904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
41, 237
               

               
Conread position:
               
657-993
               

               
Cow position:
               
chr3:60933241-60933580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
40, 61
               

               
Conread position:
               
658-897
               

               
Cow position:
               
chr3:59799073-59799316 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
104, 122
               

               
Conread position:
               
658-986
               

               
Cow position:
               
chr3:60264888-60264566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
125, 10
               

               
Conread position:
               
664-939
               

               
Cow position:
               
chr3:70899727-70900001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
664-989
               

               
Cow position:
               
chr3:48810805-48810480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
136, 54
               

               
Conread position:
               
666-993
               

               
Cow position:
               
chr3:48073040-48072724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
134, 49
               

               
Conread position:
               
667-989
               

               
Cow position:
               
chr3:68616490-68616177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
110, 51
               

               
Conread position:
               
667-993
               

               
Cow position:
               
chr3:23920595-23920264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
31, 107
               

               
Conread position:
               
668-921
               

               
Cow position:
               
chr3:26219214-26218961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
94, 43
               

               
Conread position:
               
669-903
               

               
Cow position:
               
chr3:50069601-50069837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
95, 76
               

               
Conread position:
               
669-918
               

               
Cow position:
               
chr3:80581500-80581744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chr3:59473957-59474282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
95, 70
               

               
Conread position:
               
671-992
               

               
Cow position:
               
chr3:15153531-15153849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
106, 40
               

               
Conread position:
               
672-989
               

               
Cow position:
               
chr3:9663332-9663011 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
26, 63
               

               
Conread position:
               
673-939
               

               
Cow position:
               
chr3:53508462-53508722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
174, 69
               

               
Conread position:
               
673-946
               

               
Cow position:
               
chr3:74242836-74243110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
91, 59
               

               
Conread position:
               
673-1005
               

               
Cow position:
               
chr3:59034874-59035217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
25, 212
               

               
Conread position:
               
674-993
               

               
Cow position:
               
chr3:19793751-19793428 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 89
               

               
Conread position:
               
676-897
               

               
Cow position:
               
chr3:73915960-73915740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
43, 110
               

               
Conread position:
               
676-970
               

               
Cow position:
               
chr3:26681954-26681675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
88, 42
               

               
Conread position:
               
676-987
               

               
Cow position:
               
chr3:19585705-19586020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
88, 210
               

               
Conread position:
               
676-994
               

               
Cow position:
               
chr3:24468535-24468221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
124, 97
               

               
Conread position:
               
677-993
               

               
Cow position:
               
chr3:29891568-29891244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
16, 137
               

               
Conread position:
               
678-910
               

               
Cow position:
               
chr3:55109771-55109532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
86, 0
               

               
Conread position:
               
678-919
               

               
Cow position:
               
chr3:45647978-45648220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
102, 168
               

               
Conread position:
               
678-992
               

               
Cow position:
               
chr3:10958397-10958083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 248
               

               
Conread position:
               
678-993
               

               
Cow position:
               
chr3:25754872-25755197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
122, 54
               

               
Conread position:
               
680-993
               

               
Cow position:
               
chr3:55177905-55177589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 245
               

               
Conread position:
               
682-993
               

               
Cow position:
               
chr3:22221169-22221488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
11, 31
               

               
Conread position:
               
682-1003
               

               
Cow position:
               
chr3:79196609-79196935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
82, 62
               

               
Conread position:
               
683-1001
               

               
Cow position:
               
chr3:3985178-3985486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
84, 103
               

               
Conread position:
               
686-939
               

               
Cow position:
               
chr3:62789326-62789068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
78, 234
               

               
Conread position:
               
686-993
               

               
Cow position:
               
chr3:3883965-3883658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
78, 209
               

               
Conread position:
               
691-974
               

               
Cow position:
               
chr3:73820511-73820219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
73, 54
               

               
Conread position:
               
691-993
               

               
Cow position:
               
chr3:17331585-17331881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 132
               

               
Conread position:
               
692-989
               

               
Cow position:
               
chr3:17058680-17058389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
164, 14
               

               
Conread position:
               
694-987
               

               
Cow position:
               
chr3:18426838-18426544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
163, 85
               

               
Conread position:
               
694-993
               

               
Cow position:
               
chr3:78093522-78093231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
157, 74
               

               
Conread position:
               
698-1002
               

               
Cow position:
               
chr3:7661718-7662028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
60, 149
               

               
Conread position:
               
699-995
               

               
Cow position:
               
chr3:76155854-76156150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
98, 119
               

               
Conread position:
               
707-993
               

               
Cow position:
               
chr3:59604725-59605004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
57, 30
               

               
Conread position:
               
719-993
               

               
Cow position:
               
chr3:69785739-69785458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
47, 24
               

               
Conread position:
               
725-931
               

               
Cow position:
               
chr3:54290623-54290411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
725-998
               

               
Cow position:
               
chr3:9116920-9117201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
63, 44
               

               
Conread position:
               
725-1001
               

               
Cow position:
               
chr3:1036918-1037198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 58
               

               
Conread position:
               
726-993
               

               
Cow position:
               
chr3:31361312-31361585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
47, 7
               

               
Conread position:
               
727-1004
               

               
Cow position:
               
chr3:22165523-22165242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
53, 104
               

               
Conread position:
               
732-956
               

               
Cow position:
               
chr3:19626610-19626382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
33, 151
               

               
Conread position:
               
739-989
               

               
Cow position:
               
chr3:47753130-47753395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
739-992
               

               
Cow position:
               
chr3:18607568-18607824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
25, 165
               

               
Conread position:
               
739-1005
               

               
Cow position:
               
chr3:49363021-49363282 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8e-31
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
740-967
               

               
Cow position:
               
chr3:32409118-32409356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
743-989
               

               
Cow position:
               
chr3:59299486-59299731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
21, 45
               

               
Conread position:
               
745-899
               

               
Cow position:
               
chr3:478888-478730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
745-992
               

               
Cow position:
               
chr3:71474496-71474246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
19, 174
               

               
Conread position:
               
748-997
               

               
Cow position:
               
chr3:64196739-64196991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 172
               

               
Conread position:
               
750-987
               

               
Cow position:
               
chr3:10668962-10668723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
25, 18
               

               
Conread position:
               
752-993
               

               
Cow position:
               
chr3:76269816-76270050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 34
               

               
Conread position:
               
765-993
               

               
Cow position:
               
chr3:59933302-59933542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
25, 46
               

               
Conread position:
               
773-1005
               

               
Cow position:
               
chr3:68004763-68004533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
16, 144
               

               
Conread position:
               
774-1002
               

               
Cow position:
               
chr3:49344634-49344868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
235
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
780-992
               

               
Cow position:
               
chr3:9120792-9121003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
27, 102
               

               
Conread position:
               
786-993
               

               
Cow position:
               
chr3:23132216-23132006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
15, 152
               

               
Conread position:
               
786-993
               

               
Cow position:
               
chr3:26603602-26603384 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
799-992
               

               
Cow position:
               
chr3:53084021-53083822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
57, 143
               

               
Conread position:
               
802-993
               

               
Cow position:
               
chr3:52845521-52845717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
806-992
               

               
Cow position:
               
chr3:67407392-67407206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
50, 117
               

               
Conread position:
               
808-1000
               

               
Cow position:
               
chr3:19788854-19788661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
34, 115
               

               
Conread position:
               
828-1008
               

               
Cow position:
               
chr3:66885031-66884850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
171, 87
               

               
Conread position:
               
832-1000
               

               
Cow position:
               
chr3:17531738-17531567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
837-1002
               

               
Cow position:
               
chr3:32248016-32248185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 48
               
Show alignments to all cow chromosomes.