Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8025C15.5
        

               Conread position:
               641-1004
               

               Cow position:
               chr6:50467007-50467375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               239
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               54, 118
               

               Conread position:
               644-1005
               

               Cow position:
               chr6:5609564-5609202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 7
               

               Conread position:
               646-986
               

               Cow position:
               chr6:35990356-35990020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               219
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               154, 92
               

               Conread position:
               646-992
               

               Cow position:
               chr6:24781682-24781326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               46, 127
               

               Conread position:
               646-992
               

               Cow position:
               chr6:38771161-38771496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               24, 136
               

               Conread position:
               647-991
               

               Cow position:
               chr6:65702523-65702185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               235
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               25, 69
               

               Conread position:
               647-993
               

               Cow position:
               chr6:53460694-53460345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               117, 243
               

               Conread position:
               647-1004
               

               Cow position:
               chr6:11246641-11247005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               78, 60
               

               Conread position:
               648-767
               

               Cow position:
               chr6:2012898-2013018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               95
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               648-789
               

               Cow position:
               chr6:415977-416117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               108
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               44, 134
               

               Conread position:
               648-821
               

               Cow position:
               chr6:12543054-12542877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               125, 0
               

               Conread position:
               648-821
               

               Cow position:
               chr6:53731400-53731577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               125
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               648-830
               

               Cow position:
               chr6:6460422-6460604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               145
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               116, 131
               

               Conread position:
               648-837
               

               Cow position:
               chr6:19351275-19351088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               135
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               175, 125
               

               Conread position:
               648-844
               

               Cow position:
               chr6:24962028-24962221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               116, 63
               

               Conread position:
               648-845
               

               Cow position:
               chr6:21542199-21542400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               149
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               648-846
               

               Cow position:
               chr6:18961637-18961438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 197
               

               Conread position:
               648-871
               

               Cow position:
               chr6:130282-130057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 90
               

               Conread position:
               648-874
               

               Cow position:
               chr6:58073927-58074157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               116, 100
               

               Conread position:
               648-875
               

               Cow position:
               chr6:12551149-12551379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               114, 71
               

               Conread position:
               648-875
               

               Cow position:
               chr6:35613535-35613307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               116, 66
               

               Conread position:
               648-875
               

               Cow position:
               chr6:61608390-61608622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               648-889
               

               Cow position:
               chr6:899411-899169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               181
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               204, 120
               

               Conread position:
               648-890
               

               Cow position:
               chr6:23248080-23247841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               116, 70
               

               Conread position:
               648-897
               

               Cow position:
               chr6:47640554-47640300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               116, 0
               

               Conread position:
               648-903
               

               Cow position:
               chr6:20098085-20097821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               197
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               113, 0
               

               Conread position:
               648-910
               

               Cow position:
               chr6:60350416-60350147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               187
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               107, 0
               

               Conread position:
               648-917
               

               Cow position:
               chr6:38218551-38218819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               116, 38
               

               Conread position:
               648-931
               

               Cow position:
               chr6:67214623-67214916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               648-937
               

               Cow position:
               chr6:6343305-6343602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               197
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               44, 125
               

               Conread position:
               648-939
               

               Cow position:
               chr6:1499521-1499821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               97, 20
               

               Conread position:
               648-939
               

               Cow position:
               chr6:16423582-16423881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               212
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 19
               

               Conread position:
               648-940
               

               Cow position:
               chr6:50975937-50976224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               211
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 72
               

               Conread position:
               648-940
               

               Cow position:
               chr6:66531939-66531646 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               198
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               116, 13
               

               Conread position:
               648-943
               

               Cow position:
               chr6:54867395-54867697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               45, 15
               

               Conread position:
               648-947
               

               Cow position:
               chr6:6400832-6401133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               116, 29
               

               Conread position:
               648-968
               

               Cow position:
               chr6:57571356-57571679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               227
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               70, 273
               

               Conread position:
               648-969
               

               Cow position:
               chr6:36196093-36196407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               222
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               116, 83
               

               Conread position:
               648-970
               

               Cow position:
               chr6:17414569-17414244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               331
               

               Alignm identity:
               230
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               116, 73
               

               Conread position:
               648-970
               

               Cow position:
               chr6:38640110-38640437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               229
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               111, 293
               

               Conread position:
               648-977
               

               Cow position:
               chr6:2547123-2547465 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               247
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               17, 85
               

               Conread position:
               648-984
               

               Cow position:
               chr6:7190240-7189912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               220
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               43, 33
               

               Conread position:
               648-986
               

               Cow position:
               chr6:52412737-52413081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               224
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               44, 166
               

               Conread position:
               648-986
               

               Cow position:
               chr6:54036256-54035921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               202, 63
               

               Conread position:
               648-988
               

               Cow position:
               chr6:16746219-16746567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               49, 141
               

               Conread position:
               648-989
               

               Cow position:
               chr6:13040336-13040675 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               244
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               204, 70
               

               Conread position:
               648-989
               

               Cow position:
               chr6:15305460-15305793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 89
               

               Conread position:
               648-989
               

               Cow position:
               chr6:17313613-17313960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               115, 108
               

               Conread position:
               648-989
               

               Cow position:
               chr6:32121790-32122117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               247
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               116, 88
               

               Conread position:
               648-989
               

               Cow position:
               chr6:32867327-32866999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               237
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               152, 48
               

               Conread position:
               648-989
               

               Cow position:
               chr6:63720074-63720414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               242
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               66, 70
               

               Conread position:
               648-990
               

               Cow position:
               chr6:60739894-60740233 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               230
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               50, 138
               

               Conread position:
               648-992
               

               Cow position:
               chr6:29484969-29485308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 84
               

               Conread position:
               648-992
               

               Cow position:
               chr6:57546335-57546004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               152, 42
               

               Conread position:
               648-993
               

               Cow position:
               chr6:3952401-3952747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               227
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               125, 15
               

               Conread position:
               648-993
               

               Cow position:
               chr6:5114166-5113821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               232
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               152, 96
               

               Conread position:
               648-993
               

               Cow position:
               chr6:7128521-7128178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               62, 19
               

               Conread position:
               648-993
               

               Cow position:
               chr6:8965972-8966314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               254
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               114, 52
               

               Conread position:
               648-993
               

               Cow position:
               chr6:9219152-9219489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               48, 56
               

               Conread position:
               648-993
               

               Cow position:
               chr6:15937969-15937626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               182, 15
               

               Conread position:
               648-993
               

               Cow position:
               chr6:16261665-16262007 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               49, 21
               

               Conread position:
               648-993
               

               Cow position:
               chr6:17997436-17997091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               46, 97
               

               Conread position:
               648-993
               

               Cow position:
               chr6:19446138-19446479 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               218
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               152, 70
               

               Conread position:
               648-993
               

               Cow position:
               chr6:24031258-24031589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               245
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               116, 84
               

               Conread position:
               648-993
               

               Cow position:
               chr6:24468514-24468173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 122
               

               Conread position:
               648-993
               

               Cow position:
               chr6:31535688-31535347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               246
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               116, 63
               

               Conread position:
               648-993
               

               Cow position:
               chr6:35725974-35726316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               223
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               53, 134
               

               Conread position:
               648-993
               

               Cow position:
               chr6:36202707-36203047 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 70
               

               Conread position:
               648-993
               

               Cow position:
               chr6:38853775-38853430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               243
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               84, 71
               

               Conread position:
               648-993
               

               Cow position:
               chr6:46860285-46859944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 71
               

               Conread position:
               648-993
               

               Cow position:
               chr6:47519929-47520280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 273
               

               Conread position:
               648-993
               

               Cow position:
               chr6:49398735-49398403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               235
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               116, 137
               

               Conread position:
               648-993
               

               Cow position:
               chr6:49421904-49421570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               234
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               114, 70
               

               Conread position:
               648-993
               

               Cow position:
               chr6:50577403-50577741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               242
               

               Alignm E-value:
               7.9874e-44
               

               Alignm gaps (pig, cow):
               133, 176
               

               Conread position:
               648-993
               

               Cow position:
               chr6:51581374-51581029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 97
               

               Conread position:
               648-993
               

               Cow position:
               chr6:54132696-54133037 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               244
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               114, 70
               

               Conread position:
               648-993
               

               Cow position:
               chr6:62669753-62670097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               153, 16
               

               Conread position:
               648-997
               

               Cow position:
               chr6:19264617-19264271 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               258
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 122
               

               Conread position:
               648-997
               

               Cow position:
               chr6:21456807-21456447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               110, 19
               

               Conread position:
               648-1001
               

               Cow position:
               chr6:38609847-38610208 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               235
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               54, 131
               

               Conread position:
               648-1001
               

               Cow position:
               chr6:55282407-55282053 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               152, 30
               

               Conread position:
               648-1002
               

               Cow position:
               chr6:34196271-34195927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               236
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               116, 152
               

               Conread position:
               648-1002
               

               Cow position:
               chr6:61631730-61631368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               230
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               44, 126
               

               Conread position:
               648-1003
               

               Cow position:
               chr6:10106113-10105747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 262
               

               Conread position:
               648-1003
               

               Cow position:
               chr6:47305218-47305578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               245
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               44, 89
               

               Conread position:
               648-1003
               

               Cow position:
               chr6:47574784-47575128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               253
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               77, 123
               

               Conread position:
               648-1003
               

               Cow position:
               chr6:54365449-54365093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               46, 15
               

               Conread position:
               648-1004
               

               Cow position:
               chr6:8562599-8562951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               125, 165
               

               Conread position:
               648-1004
               

               Cow position:
               chr6:16700138-16700491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               43, 133
               

               Conread position:
               648-1004
               

               Cow position:
               chr6:40032072-40032416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               126, 90
               

               Conread position:
               649-820
               

               Cow position:
               chr6:38233840-38234011 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               115, 19
               

               Conread position:
               649-920
               

               Cow position:
               chr6:9452889-9452614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               115, 88
               

               Conread position:
               649-921
               

               Cow position:
               chr6:53651923-53652196 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               193
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               192, 72
               

               Conread position:
               649-921
               

               Cow position:
               chr6:54991120-54990845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               115, 30
               

               Conread position:
               649-925
               

               Cow position:
               chr6:42565569-42565847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               183
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               40, 20
               

               Conread position:
               649-939
               

               Cow position:
               chr6:8209711-8209433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               202, 69
               

               Conread position:
               649-940
               

               Cow position:
               chr6:47799171-47799469 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               199
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               649-945
               

               Cow position:
               chr6:21869767-21869470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               115, 12
               

               Conread position:
               649-953
               

               Cow position:
               chr6:48112082-48112382 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               110, 15
               

               Conread position:
               649-974
               

               Cow position:
               chr6:23695875-23696206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               232
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               115, 12
               

               Conread position:
               649-980
               

               Cow position:
               chr6:26915209-26915541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 268
               

               Conread position:
               649-985
               

               Cow position:
               chr6:32287518-32287849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 131
               

               Conread position:
               649-986
               

               Cow position:
               chr6:35842530-35842879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               230
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               43, 115
               

               Conread position:
               649-989
               

               Cow position:
               chr6:6965507-6965173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               115, 28
               

               Conread position:
               649-993
               

               Cow position:
               chr6:15243136-15243485 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 69
               

               Conread position:
               649-993
               

               Cow position:
               chr6:25615222-25614864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               251
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               115, 34
               

               Conread position:
               649-993
               

               Cow position:
               chr6:39358463-39358117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               247
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               76, 48
               

               Conread position:
               649-993
               

               Cow position:
               chr6:46283120-46282766 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               256
               

               Alignm E-value:
               6.99949e-42
               

               Alignm gaps (pig, cow):
               113, 59
               

               Conread position:
               649-993
               

               Cow position:
               chr6:47355704-47356052 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               115, 96
               

               Conread position:
               649-996
               

               Cow position:
               chr6:38207613-38207257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 111
               

               Conread position:
               649-1000
               

               Cow position:
               chr6:4383366-4383707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               76, 69
               

               Conread position:
               649-1004
               

               Cow position:
               chr6:65264656-65264314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               48, 18
               

               Conread position:
               649-1008
               

               Cow position:
               chr6:46465706-46466060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               151, 12
               

               Conread position:
               650-873
               

               Cow position:
               chr6:1886783-1886559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               42, 72
               

               Conread position:
               650-900
               

               Cow position:
               chr6:14958464-14958205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               650-938
               

               Cow position:
               chr6:46570999-46571278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               202
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               193, 17
               

               Conread position:
               650-989
               

               Cow position:
               chr6:120124-120459 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               243
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               74, 44
               

               Conread position:
               651-845
               

               Cow position:
               chr6:12829340-12829148 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               124, 13
               

               Conread position:
               651-989
               

               Cow position:
               chr6:65870910-65871253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 275
               

               Conread position:
               651-993
               

               Cow position:
               chr6:5095672-5095316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               232
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               48, 142
               

               Conread position:
               651-993
               

               Cow position:
               chr6:15242718-15243065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               232
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               74, 60
               

               Conread position:
               651-993
               

               Cow position:
               chr6:15300937-15300614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               47, 88
               

               Conread position:
               651-993
               

               Cow position:
               chr6:19401739-19402071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               46, 10
               

               Conread position:
               651-993
               

               Cow position:
               chr6:31847338-31847018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               45, 38
               

               Conread position:
               651-1001
               

               Cow position:
               chr6:22850363-22850018 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               42, 82
               

               Conread position:
               651-1003
               

               Cow position:
               chr6:445197-445563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               231
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               41, 261
               

               Conread position:
               651-1004
               

               Cow position:
               chr6:13687930-13687579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 23
               

               Conread position:
               652-875
               

               Cow position:
               chr6:56843039-56843264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               112, 42
               

               Conread position:
               652-903
               

               Cow position:
               chr6:38614704-38614950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               108, 16
               

               Conread position:
               652-968
               

               Cow position:
               chr6:8637158-8637478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               234
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               34, 49
               

               Conread position:
               652-993
               

               Cow position:
               chr6:11192583-11192254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 48
               

               Conread position:
               653-912
               

               Cow position:
               chr6:4864663-4864400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               112, 11
               

               Conread position:
               653-924
               

               Cow position:
               chr6:28977151-28976881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               202
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               111, 59
               

               Conread position:
               653-967
               

               Cow position:
               chr6:37149071-37149386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               217
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               13, 18
               

               Conread position:
               653-993
               

               Cow position:
               chr6:2607500-2607834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               213
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               162, 43
               

               Conread position:
               653-1000
               

               Cow position:
               chr6:38641378-38641728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               223
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               111, 188
               

               Conread position:
               653-1003
               

               Cow position:
               chr6:67950837-67951193 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               245
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               109, 68
               

               Conread position:
               654-993
               

               Cow position:
               chr6:55209441-55209786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               43, 113
               

               Conread position:
               661-993
               

               Cow position:
               chr6:59603315-59602989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               236
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               103, 44
               

               Conread position:
               662-844
               

               Cow position:
               chr6:37376624-37376438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               136
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               664-1003
               

               Cow position:
               chr6:61168670-61169003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               241
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               187, 54
               

               Conread position:
               667-993
               

               Cow position:
               chr6:44078416-44078741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               210
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               105, 41
               

               Conread position:
               667-993
               

               Cow position:
               chr6:58370651-58370973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               216
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               31, 190
               

               Conread position:
               667-1005
               

               Cow position:
               chr6:21231429-21231751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               97, 44
               

               Conread position:
               668-992
               

               Cow position:
               chr6:53024896-53024586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               231
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               96, 50
               

               Conread position:
               669-970
               

               Cow position:
               chr6:61269209-61269514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 230
               

               Conread position:
               669-1000
               

               Cow position:
               chr6:61524301-61523972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               238
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               95, 67
               

               Conread position:
               671-993
               

               Cow position:
               chr6:19292700-19293024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               21, 74
               

               Conread position:
               673-924
               

               Cow position:
               chr6:66375426-66375177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               176
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               170, 93
               

               Conread position:
               678-987
               

               Cow position:
               chr6:9719015-9718697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               25, 106
               

               Conread position:
               679-989
               

               Cow position:
               chr6:60516739-60517060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               209
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               85, 11
               

               Conread position:
               680-993
               

               Cow position:
               chr6:37332018-37332337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               237
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               84, 64
               

               Conread position:
               680-1003
               

               Cow position:
               chr6:33509701-33510027 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               84, 94
               

               Conread position:
               682-989
               

               Cow position:
               chr6:16288139-16287845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               683-989
               

               Cow position:
               chr6:60274094-60273788 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               57, 29
               

               Conread position:
               683-993
               

               Cow position:
               chr6:52478500-52478185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 103
               

               Conread position:
               686-929
               

               Cow position:
               chr6:17245690-17245454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               174
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               59, 83
               

               Conread position:
               687-992
               

               Cow position:
               chr6:12092075-12091761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               113, 129
               

               Conread position:
               690-939
               

               Cow position:
               chr6:23466108-23465862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               110, 78
               

               Conread position:
               691-1006
               

               Cow position:
               chr6:5330338-5330653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               211
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               74, 5
               

               Conread position:
               693-992
               

               Cow position:
               chr6:55546253-55545947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               94, 111
               

               Conread position:
               694-875
               

               Cow position:
               chr6:59770156-59770334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               70, 21
               

               Conread position:
               694-989
               

               Cow position:
               chr6:694222-693923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               217
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               70, 45
               

               Conread position:
               694-989
               

               Cow position:
               chr6:22985933-22985640 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               70, 190
               

               Conread position:
               694-1001
               

               Cow position:
               chr6:18955140-18954853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               209
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               129, 74
               

               Conread position:
               695-993
               

               Cow position:
               chr6:17068723-17068429 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               207
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               87, 225
               

               Conread position:
               696-863
               

               Cow position:
               chr6:36493622-36493443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               132
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               698-1006
               

               Cow position:
               chr6:41375699-41376009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               75, 214
               

               Conread position:
               699-992
               

               Cow position:
               chr6:50504387-50504681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               65, 11
               

               Conread position:
               700-978
               

               Cow position:
               chr6:67643760-67643478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               25, 17
               

               Conread position:
               701-989
               

               Cow position:
               chr6:18118120-18117829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               63, 130
               

               Conread position:
               701-1005
               

               Cow position:
               chr6:9302784-9302484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               211
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               20, 13
               

               Conread position:
               702-875
               

               Cow position:
               chr6:15022615-15022437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               128
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               62, 127
               

               Conread position:
               702-1004
               

               Cow position:
               chr6:37395475-37395166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               62, 116
               

               Conread position:
               704-854
               

               Cow position:
               chr6:67615496-67615344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               705-974
               

               Cow position:
               chr6:60468173-60468443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               59, 81
               

               Conread position:
               718-993
               

               Cow position:
               chr6:60144250-60143973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               190
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               46, 207
               

               Conread position:
               721-993
               

               Cow position:
               chr6:68816118-68816396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               197
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               44, 128
               

               Conread position:
               724-991
               

               Cow position:
               chr6:2078865-2078592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               40, 200
               

               Conread position:
               724-993
               

               Cow position:
               chr6:3350974-3351254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               40, 203
               

               Conread position:
               730-983
               

               Cow position:
               chr6:36921013-36920759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               61, 11
               

               Conread position:
               739-903
               

               Cow position:
               chr6:32853156-32853325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               745-992
               

               Cow position:
               chr6:63065800-63066062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               745-993
               

               Cow position:
               chr6:48097626-48097377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               29, 44
               

               Conread position:
               745-993
               

               Cow position:
               chr6:67451397-67451146 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               19, 234
               

               Conread position:
               748-989
               

               Cow position:
               chr6:21293518-21293276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               173
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               16, 130
               

               Conread position:
               750-993
               

               Cow position:
               chr6:53546016-53546255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               14, 20
               

               Conread position:
               767-989
               

               Cow position:
               chr6:21470426-21470210 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               154
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               89, 19
               

               Conread position:
               769-992
               

               Cow position:
               chr6:42034773-42034995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               34, 14
               

               Conread position:
               802-992
               

               Cow position:
               chr6:12761313-12761505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               21, 26
               

               Conread position:
               806-993
               

               Cow position:
               chr6:36537323-36537137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               134
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               37, 119
               

               Conread position:
               806-1005
               

               Cow position:
               chr6:21083503-21083302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               139
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               52, 111
               

               Conread position:
               813-1006
               

               Cow position:
               chr6:21350988-21350792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               30, 58
               

               Conread position:
               816-1005
               

               Cow position:
               chr6:40682615-40682431 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               134
               

               Alignm E-value:
               9e-24
               

               Alignm gaps (pig, cow):
               118, 0
               

               Conread position:
               832-984
               

               Cow position:
               chr6:53235586-53235436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               112
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               842-997
               

               Cow position:
               chr6:1945034-1945188 (view UCSC Genome Browser custom track)
               

               Alignm length:
               157
               

               Alignm identity:
               114
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               116, 5
               

               Conread position:
               855-993
               

               Cow position:
               chr6:4699797-4699931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               139
               

               Alignm identity:
               105
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               71, 0
               
Show alignments to all cow chromosomes.
Conread position:	641-1004
Cow position:	chr6:50467007-50467375 (view UCSC Genome Browser custom track)
Alignm length:	374
Alignm identity:	239
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	54, 118
Conread position:	644-1005
Cow position:	chr6:5609564-5609202 (view UCSC Genome Browser custom track)
Alignm length:	372
Alignm identity:	260
Alignm E-value:	0
Alignm gaps (pig, cow):	118, 7
Conread position:	646-986
Cow position:	chr6:35990356-35990020 (view UCSC Genome Browser custom track)
Alignm length:	347
Alignm identity:	219
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	154, 92
Conread position:	646-992
Cow position:	chr6:24781682-24781326 (view UCSC Genome Browser custom track)
Alignm length:	362
Alignm identity:	232
Alignm E-value:	9e-24
Alignm gaps (pig, cow):	46, 127
Conread position:	647-991
Cow position:	chr6:65702523-65702185 (view UCSC Genome Browser custom track)
Alignm length:	357
Alignm identity:	235
Alignm E-value:	7e-21
Alignm gaps (pig, cow):	25, 69
Conread position:	647-993
Cow position:	chr6:53460694-53460345 (view UCSC Genome Browser custom track)
Alignm length:	358
Alignm identity:	253
Alignm E-value:	1.4013e-45
Alignm gaps (pig, cow):	117, 243
Conread position:	647-1004
Cow position:	chr6:11246641-11247005 (view UCSC Genome Browser custom track)
Alignm length:	370
Alignm identity:	240
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	78, 60
Conread position:	648-767
Cow position:	chr6:2012898-2013018 (view UCSC Genome Browser custom track)
Alignm length:	121
Alignm identity:	95
Alignm E-value:	2e-22
Alignm gaps (pig, cow):	116, 0
Conread position:	648-789
Cow position:	chr6:415977-416117 (view UCSC Genome Browser custom track)
Alignm length:	143
Alignm identity:	108
Alignm E-value:	8e-23
Alignm gaps (pig, cow):	44, 134
Conread position:	648-821
Cow position:	chr6:12543054-12542877 (view UCSC Genome Browser custom track)
Alignm length:	178
Alignm identity:	131
Alignm E-value:	1e-27
Alignm gaps (pig, cow):	125, 0
Conread position:	648-830
Cow position:	chr6:6460422-6460604 (view UCSC Genome Browser custom track)
Alignm length:	185
Alignm identity:	145
Alignm E-value:	4e-37
Alignm gaps (pig, cow):	116, 131
Conread position:	648-837
Cow position:	chr6:19351275-19351088 (view UCSC Genome Browser custom track)
Alignm length:	191
Alignm identity:	135
Alignm E-value:	1e-24
Alignm gaps (pig, cow):	175, 125
Conread position:	648-844
Cow position:	chr6:24962028-24962221 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	149
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	116, 63
Conread position:	648-845
Cow position:	chr6:21542199-21542400 (view UCSC Genome Browser custom track)
Alignm length:	202
Alignm identity:	149
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	116, 0
Conread position:	648-846
Cow position:	chr6:18961637-18961438 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	149
Alignm E-value:	9e-34
Alignm gaps (pig, cow):	116, 197
Conread position:	648-871
Cow position:	chr6:130282-130057 (view UCSC Genome Browser custom track)
Alignm length:	229
Alignm identity:	167
Alignm E-value:	9e-34
Alignm gaps (pig, cow):	116, 90
Conread position:	648-874
Cow position:	chr6:58073927-58074157 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	162
Alignm E-value:	3e-25
Alignm gaps (pig, cow):	116, 100
Conread position:	648-875
Cow position:	chr6:12551149-12551379 (view UCSC Genome Browser custom track)
Alignm length:	234
Alignm identity:	169
Alignm E-value:	2e-32
Alignm gaps (pig, cow):	114, 71
Conread position:	648-889
Cow position:	chr6:899411-899169 (view UCSC Genome Browser custom track)
Alignm length:	245
Alignm identity:	181
Alignm E-value:	1.99965e-42
Alignm gaps (pig, cow):	204, 120
Conread position:	648-890
Cow position:	chr6:23248080-23247841 (view UCSC Genome Browser custom track)
Alignm length:	248
Alignm identity:	173
Alignm E-value:	4e-27
Alignm gaps (pig, cow):	116, 70