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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8025C15.5
        

               
Conread position:
               
630-925
               

               
Cow position:
               
chrX:678717-678427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
13, 54
               

               
Conread position:
               
630-993
               

               
Cow position:
               
chrX:30133478-30133109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 253
               

               
Conread position:
               
644-989
               

               
Cow position:
               
chrX:13177602-13177273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
174, 7
               

               
Conread position:
               
646-916
               

               
Cow position:
               
chrX:29120910-29121185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
118, 0
               

               
Conread position:
               
646-928
               

               
Cow position:
               
chrX:4043987-4043720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
646-1004
               

               
Cow position:
               
chrX:35885866-35885506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
51, 116
               

               
Conread position:
               
648-769
               

               
Cow position:
               
chrX:10366360-10366239 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
122
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
648-774
               

               
Cow position:
               
chrX:35388036-35387909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-788
               

               
Cow position:
               
chrX:35609854-35609998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
648-796
               

               
Cow position:
               
chrX:4750438-4750289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
116, 122
               

               
Conread position:
               
648-814
               

               
Cow position:
               
chrX:38439344-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-821
               

               
Cow position:
               
chrX:34990901-34991076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
116, 90
               

               
Conread position:
               
648-845
               

               
Cow position:
               
chrX:26876017-26875817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
66, 82
               

               
Conread position:
               
648-861
               

               
Cow position:
               
chrX:13785497-13785280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
77, 70
               

               
Conread position:
               
648-871
               

               
Cow position:
               
chrX:15814953-15815177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
116, 81
               

               
Conread position:
               
648-874
               

               
Cow position:
               
chrX:7646122-7646347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
132, 79
               

               
Conread position:
               
648-890
               

               
Cow position:
               
chrX:7509008-7509251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
116, 207
               

               
Conread position:
               
648-890
               

               
Cow position:
               
chrX:38936566-38936812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
114, 51
               

               
Conread position:
               
648-903
               

               
Cow position:
               
chrX:39558481-39558224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
116, 21
               

               
Conread position:
               
648-910
               

               
Cow position:
               
chrX:37232279-37232539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
76, 66
               

               
Conread position:
               
648-915
               

               
Cow position:
               
chrX:10412119-10411847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 73
               

               
Conread position:
               
648-918
               

               
Cow position:
               
chrX:17662727-17662458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
116, 143
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chrX:1503204-1503468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-29
               

               
Alignm gaps (pig, cow):
               
90, 0
               

               
Conread position:
               
648-919
               

               
Cow position:
               
chrX:37986099-37986366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 66
               

               
Conread position:
               
648-921
               

               
Cow position:
               
chrX:45845965-45846244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
116, 174
               

               
Conread position:
               
648-928
               

               
Cow position:
               
chrX:30543421-30543134 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
648-930
               

               
Cow position:
               
chrX:31311895-31312182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
115, 90
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chrX:11614565-11614846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
50, 135
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chrX:40557815-40557526 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-931
               

               
Cow position:
               
chrX:45414434-45414157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
116, 136
               

               
Conread position:
               
648-932
               

               
Cow position:
               
chrX:10959531-10959240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:616396-616098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:619138-618848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
116, 211
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:29680394-29680100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
148, 125
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:34401864-34402164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
116, 142
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:38006898-38006610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
151, 120
               

               
Conread position:
               
648-939
               

               
Cow position:
               
chrX:40269354-40269652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 274
               

               
Conread position:
               
648-940
               

               
Cow position:
               
chrX:33493644-33493938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
125, 55
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chrX:8797117-8797419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
26, 180
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chrX:9416827-9416518 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
110, 153
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chrX:17725840-17726146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
648-947
               

               
Cow position:
               
chrX:41884548-41884246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
116, 250
               

               
Conread position:
               
648-958
               

               
Cow position:
               
chrX:32309975-32310284 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
44, 54
               

               
Conread position:
               
648-968
               

               
Cow position:
               
chrX:28866130-28865814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
111, 19
               

               
Conread position:
               
648-968
               

               
Cow position:
               
chrX:31252284-31252598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
77, 68
               

               
Conread position:
               
648-974
               

               
Cow position:
               
chrX:13647919-13647588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 101
               

               
Conread position:
               
648-977
               

               
Cow position:
               
chrX:21672421-21672761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
648-984
               

               
Cow position:
               
chrX:23514149-23513801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
152, 175
               

               
Conread position:
               
648-986
               

               
Cow position:
               
chrX:36061021-36061367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 237
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chrX:17794851-17795189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6.02558e-44
               

               
Alignm gaps (pig, cow):
               
116, 29
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chrX:29601963-29601620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1.99965e-42
               

               
Alignm gaps (pig, cow):
               
116, 16
               

               
Conread position:
               
648-987
               

               
Cow position:
               
chrX:34502788-34503138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
116, 132
               

               
Conread position:
               
648-988
               

               
Cow position:
               
chrX:35542761-35543094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 106
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chrX:1616178-1615847 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
116, 133
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chrX:12309519-12309174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
54, 31
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chrX:18204597-18204255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
51, 146
               

               
Conread position:
               
648-989
               

               
Cow position:
               
chrX:34565149-34565496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
125, 51
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chrX:11633544-11633896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
47, 236
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chrX:22074666-22075009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 91
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chrX:34313899-34314235 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 19
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chrX:34543652-34544000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 91
               

               
Conread position:
               
648-992
               

               
Cow position:
               
chrX:35822208-35822545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:3579810-3580160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
44, 96
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:4398995-4399333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
125, 61
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:4632986-4632639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:6544122-6544460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 94
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:7351165-7351516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
52, 127
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:8869536-8869189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
117, 46
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:8917262-8917610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
45, 121
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:10252314-10251987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
180, 16
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:10831627-10831266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
118, 238
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:12979961-12979620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
116, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:14884092-14883742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 251
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:20151712-20152063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
51, 210
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:21986426-21986086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
116, 181
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:22482819-22482474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
134, 13
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:22921182-22921536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
49, 237
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:23563927-23563575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 124
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:27145489-27145814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
152, 70
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:27432048-27431709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 120
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:29542353-29542013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 228
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:31436344-31436684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 93
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:34411710-34412063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 35
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:34441586-34441238 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
43, 138
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:36355981-36356319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
116, 84
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:37072274-37072601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
208, 84
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:37781248-37780897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 263
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:38094657-38094311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
48, 202
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:38218577-38218928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
139, 48
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:38549318-38549661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
152, 44
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:41879066-41878722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
88, 73
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:45110525-45110866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
116, 32
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:45502018-45502350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
116, 63
               

               
Conread position:
               
648-993
               

               
Cow position:
               
chrX:48010464-48010820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
44, 169
               

               
Conread position:
               
648-1000
               

               
Cow position:
               
chrX:29545012-29544664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 126
               

               
Conread position:
               
648-1001
               

               
Cow position:
               
chrX:38642127-38642465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
648-1001
               

               
Cow position:
               
chrX:47280066-47279713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
152, 116
               

               
Conread position:
               
648-1002
               

               
Cow position:
               
chrX:6413910-6414261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 142
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chrX:31442956-31442614 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
43, 74
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chrX:32820894-32821265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
44, 140
               

               
Conread position:
               
648-1003
               

               
Cow position:
               
chrX:40035574-40035212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
129, 20
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chrX:20340022-20339669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
202, 38
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chrX:27174861-27175226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 118
               

               
Conread position:
               
648-1004
               

               
Cow position:
               
chrX:41027023-41027386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
116, 48
               

               
Conread position:
               
648-1005
               

               
Cow position:
               
chrX:26492872-26493236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
45, 133
               

               
Conread position:
               
648-1008
               

               
Cow position:
               
chrX:6407418-6407775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
165, 21
               

               
Conread position:
               
649-781
               

               
Cow position:
               
chrX:11806146-11806013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
111, 0
               

               
Conread position:
               
649-787
               

               
Cow position:
               
chrX:20582895-20583026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
12, 23
               

               
Conread position:
               
649-818
               

               
Cow position:
               
chrX:19015305-19015474 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
115, 96
               

               
Conread position:
               
649-845
               

               
Cow position:
               
chrX:34192540-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
649-875
               

               
Cow position:
               
chrX:13382196-13382421 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
46, 176
               

               
Conread position:
               
649-875
               

               
Cow position:
               
chrX:27680266-27680495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
115, 62
               

               
Conread position:
               
649-909
               

               
Cow position:
               
chrX:37574717-37574971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
649-922
               

               
Cow position:
               
chrX:38066583-38066309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
115, 69
               

               
Conread position:
               
649-925
               

               
Cow position:
               
chrX:7571771-7572050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
115, 45
               

               
Conread position:
               
649-932
               

               
Cow position:
               
chrX:22387376-22387097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
48, 118
               

               
Conread position:
               
649-940
               

               
Cow position:
               
chrX:36067884-36068178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
115, 34
               

               
Conread position:
               
649-989
               

               
Cow position:
               
chrX:8730950-8731305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
16, 254
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chrX:17231599-17231951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
17, 24
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chrX:31949066-31948720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
48, 8
               

               
Conread position:
               
649-992
               

               
Cow position:
               
chrX:35273223-35273586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
125, 72
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:5118635-5118283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 99
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:9201417-9201758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 137
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:10866001-10865655 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
44, 120
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:13912945-13913290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 55
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:21642611-21642266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:25207976-25207646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 109
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:38853065-38853426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
138, 92
               

               
Conread position:
               
649-993
               

               
Cow position:
               
chrX:45430152-45429815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 95
               

               
Conread position:
               
649-994
               

               
Cow position:
               
chrX:42381235-42380896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 72
               

               
Conread position:
               
649-1004
               

               
Cow position:
               
chrX:46587686-46588046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
649-1005
               

               
Cow position:
               
chrX:35224163-35224503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
26, 33
               

               
Conread position:
               
649-1008
               

               
Cow position:
               
chrX:44396886-44397241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
115, 49
               

               
Conread position:
               
650-931
               

               
Cow position:
               
chrX:42171428-42171142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
114, 231
               

               
Conread position:
               
650-974
               

               
Cow position:
               
chrX:5919364-5919688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chrX:11655960-11656293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
173, 118
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chrX:30963006-30962660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
49, 123
               

               
Conread position:
               
650-993
               

               
Cow position:
               
chrX:34792439-34792108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
114, 18
               

               
Conread position:
               
650-1000
               

               
Cow position:
               
chrX:40685463-40685107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 66
               

               
Conread position:
               
651-903
               

               
Cow position:
               
chrX:19273854-19273582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
651-910
               

               
Cow position:
               
chrX:18695051-18694802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
651-922
               

               
Cow position:
               
chrX:42470072-42469797 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
113, 56
               

               
Conread position:
               
651-937
               

               
Cow position:
               
chrX:39415498-39415212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
65, 79
               

               
Conread position:
               
651-945
               

               
Cow position:
               
chrX:878506-878212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
113, 17
               

               
Conread position:
               
651-947
               

               
Cow position:
               
chrX:27772092-27771802 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 105
               

               
Conread position:
               
651-987
               

               
Cow position:
               
chrX:31294688-31294360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
119, 52
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chrX:1499534-1499865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
40, 89
               

               
Conread position:
               
651-989
               

               
Cow position:
               
chrX:45976789-45977135 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
42, 240
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chrX:8925570-8925895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
149, 122
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chrX:20584192-20584527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
12, 235
               

               
Conread position:
               
651-993
               

               
Cow position:
               
chrX:27227992-27228344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
47, 138
               

               
Conread position:
               
651-1003
               

               
Cow position:
               
chrX:34505178-34504828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
113, 69
               

               
Conread position:
               
652-873
               

               
Cow position:
               
chrX:6488446-6488671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
40, 130
               

               
Conread position:
               
652-930
               

               
Cow position:
               
chrX:24424515-24424252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
204, 15
               

               
Conread position:
               
652-967
               

               
Cow position:
               
chrX:6690383-6690072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
47, 21
               

               
Conread position:
               
652-992
               

               
Cow position:
               
chrX:43115021-43115363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
29, 106
               

               
Conread position:
               
652-1004
               

               
Cow position:
               
chrX:40826883-40826524 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
45, 23
               

               
Conread position:
               
653-939
               

               
Cow position:
               
chrX:5017543-5017261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
111, 173
               

               
Conread position:
               
653-939
               

               
Cow position:
               
chrX:27394149-27393868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
9e-27
               

               
Alignm gaps (pig, cow):
               
13, 44
               

               
Conread position:
               
653-1004
               

               
Cow position:
               
chrX:27705451-27705813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
9, 114
               

               
Conread position:
               
658-983
               

               
Cow position:
               
chrX:27946183-27945848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
39, 226
               

               
Conread position:
               
662-989
               

               
Cow position:
               
chrX:26881688-26881351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
102, 169
               

               
Conread position:
               
663-993
               

               
Cow position:
               
chrX:4403195-4403533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 76
               

               
Conread position:
               
664-996
               

               
Cow position:
               
chrX:4768626-4768946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
92, 32
               

               
Conread position:
               
665-993
               

               
Cow position:
               
chrX:42927936-42927615 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 103
               

               
Conread position:
               
666-947
               

               
Cow position:
               
chrX:29194118-29194398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
98, 65
               

               
Conread position:
               
669-912
               

               
Cow position:
               
chrX:33539052-33539304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 109
               

               
Conread position:
               
669-993
               

               
Cow position:
               
chrX:30338055-30337739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
258, 42
               

               
Conread position:
               
669-1005
               

               
Cow position:
               
chrX:9651138-9650800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
343
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
95, 69
               

               
Conread position:
               
670-947
               

               
Cow position:
               
chrX:42235640-42235353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
672-993
               

               
Cow position:
               
chrX:29229900-29230222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
673-969
               

               
Cow position:
               
chrX:4515577-4515879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
115, 22
               

               
Conread position:
               
673-993
               

               
Cow position:
               
chrX:17949599-17949277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
24, 99
               

               
Conread position:
               
676-968
               

               
Cow position:
               
chrX:169646-169351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
16, 43
               

               
Conread position:
               
677-989
               

               
Cow position:
               
chrX:34376842-34377150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
87, 44
               

               
Conread position:
               
678-1004
               

               
Cow position:
               
chrX:12290622-12290944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
3e-26
               

               
Alignm gaps (pig, cow):
               
14, 42
               

               
Conread position:
               
679-993
               

               
Cow position:
               
chrX:24365930-24365607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
14, 228
               

               
Conread position:
               
680-1001
               

               
Cow position:
               
chrX:34837156-34836849 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4.99983e-42
               

               
Alignm gaps (pig, cow):
               
171, 41
               

               
Conread position:
               
680-1001
               

               
Cow position:
               
chrX:46291036-46291364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
104, 80
               

               
Conread position:
               
683-931
               

               
Cow position:
               
chrX:18273156-18272905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
81, 7
               

               
Conread position:
               
685-993
               

               
Cow position:
               
chrX:9252256-9251948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 9
               

               
Conread position:
               
686-993
               

               
Cow position:
               
chrX:12095870-12095556 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
687-993
               

               
Cow position:
               
chrX:38560462-38560765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
37, 75
               

               
Conread position:
               
688-993
               

               
Cow position:
               
chrX:47345240-47345545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
112, 80
               

               
Conread position:
               
688-1005
               

               
Cow position:
               
chrX:20168464-20168784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
101, 85
               

               
Conread position:
               
690-993
               

               
Cow position:
               
chrX:1466069-1466378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
74, 229
               

               
Conread position:
               
691-993
               

               
Cow position:
               
chrX:4296910-4296609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
161, 92
               

               
Conread position:
               
691-1003
               

               
Cow position:
               
chrX:918818-918503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
73, 229
               

               
Conread position:
               
691-1003
               

               
Cow position:
               
chrX:29050156-29050468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 140
               

               
Conread position:
               
693-993
               

               
Cow position:
               
chrX:41238440-41238147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
107, 45
               

               
Conread position:
               
696-993
               

               
Cow position:
               
chrX:48071075-48071377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
696-995
               

               
Cow position:
               
chrX:40680525-40680832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
5e-21
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
703-993
               

               
Cow position:
               
chrX:22115396-22115099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
12, 66
               

               
Conread position:
               
703-993
               

               
Cow position:
               
chrX:22283753-22284054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
64, 56
               

               
Conread position:
               
704-993
               

               
Cow position:
               
chrX:4153113-4152829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
60, 219
               

               
Conread position:
               
718-918
               

               
Cow position:
               
chrX:46429884-46429679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
46, 20
               

               
Conread position:
               
718-989
               

               
Cow position:
               
chrX:12437334-12437072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-23
               

               
Alignm gaps (pig, cow):
               
46, 62
               

               
Conread position:
               
722-993
               

               
Cow position:
               
chrX:20957186-20957454 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 48
               

               
Conread position:
               
728-974
               

               
Cow position:
               
chrX:35985764-35986016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
34, 108
               

               
Conread position:
               
733-993
               

               
Cow position:
               
chrX:22393035-22392773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
31, 98
               

               
Conread position:
               
740-993
               

               
Cow position:
               
chrX:27306410-27306654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
24, 180
               

               
Conread position:
               
742-992
               

               
Cow position:
               
chrX:24749047-24749301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
22, 39
               

               
Conread position:
               
745-989
               

               
Cow position:
               
chrX:19394515-19394766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
745-1003
               

               
Cow position:
               
chrX:6599821-6599549 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
746-940
               

               
Cow position:
               
chrX:40532080-40531882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
18, 182
               

               
Conread position:
               
746-993
               

               
Cow position:
               
chrX:1088176-1087933 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-21
               

               
Alignm gaps (pig, cow):
               
27, 17
               

               
Conread position:
               
748-993
               

               
Cow position:
               
chrX:28940212-28940459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-27
               

               
Alignm gaps (pig, cow):
               
102, 9
               

               
Conread position:
               
770-1003
               

               
Cow position:
               
chrX:16836299-16836068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
19, 155
               

               
Conread position:
               
777-993
               

               
Cow position:
               
chrX:2935952-2936168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
26, 154
               

               
Conread position:
               
778-993
               

               
Cow position:
               
chrX:32208827-32208612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
11, 97
               

               
Conread position:
               
785-997
               

               
Cow position:
               
chrX:27668955-27668743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
15, 134
               

               
Conread position:
               
793-1003
               

               
Cow position:
               
chrX:29467767-29467557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-26
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
799-1005
               

               
Cow position:
               
chrX:31479989-31480196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
198, 106
               

               
Conread position:
               
807-993
               

               
Cow position:
               
chrX:23359085-23358902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
105, 0
               

               
Conread position:
               
816-993
               

               
Cow position:
               
chrX:34991399-34991576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
31, 101
               

               
Conread position:
               
840-989
               

               
Cow position:
               
chrX:6640489-6640635 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
840-993
               

               
Cow position:
               
chrX:14135740-14135890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
74, 0
               
Show alignments to all cow chromosomes.