Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 294-436 |
| Cow position: | chr13:20543402-20543259 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 92, 83 |
| Conread position: | 467-852 |
| Cow position: | chr13:3276515-3276898 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 133 |
| Conread position: | 475-836 |
| Cow position: | chr13:24581741-24581386 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 475-852 |
| Cow position: | chr13:2297432-2297058 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 110 |
| Conread position: | 475-852 |
| Cow position: | chr13:50108831-50109202 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 476-672 |
| Cow position: | chr13:53834138-53834334 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 85, 95 |
| Conread position: | 476-770 |
| Cow position: | chr13:15542831-15543125 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-780 |
| Cow position: | chr13:35029889-35030181 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 89 |
| Conread position: | 476-841 |
| Cow position: | chr13:4481842-4482201 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 476-841 |
| Cow position: | chr13:31612969-31612605 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 476-848 |
| Cow position: | chr13:35756597-35756978 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 476-851 |
| Cow position: | chr13:33336959-33336593 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 277 |
| Conread position: | 476-852 |
| Cow position: | chr13:1593789-1593413 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 476-852 |
| Cow position: | chr13:3654940-3654569 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 116 |
| Conread position: | 476-852 |
| Cow position: | chr13:4940452-4940827 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:15521148-15520775 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:15925017-15924644 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:30302438-30302806 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:32544314-32544681 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:32738442-32738080 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 58 |
| Conread position: | 476-852 |
| Cow position: | chr13:34042997-34042624 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 476-852 |
| Cow position: | chr13:34868138-34868513 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 103 |
| Conread position: | 476-852 |
| Cow position: | chr13:46732978-46732614 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 298, 114 |
| Conread position: | 476-861 |
| Cow position: | chr13:6668758-6668375 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 0 |
| Conread position: | 477-741 |
| Cow position: | chr13:48356701-48356953 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 477-765 |
| Cow position: | chr13:2389429-2389150 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 192 |
| Conread position: | 477-849 |
| Cow position: | chr13:30237545-30237913 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 89 |
| Conread position: | 477-849 |
| Cow position: | chr13:34911997-34911639 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 477-851 |
| Cow position: | chr13:21600970-21601347 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 53 |
| Conread position: | 477-851 |
| Cow position: | chr13:30657594-30657229 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 477-852 |
| Cow position: | chr13:2232040-2232400 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 477-852 |
| Cow position: | chr13:2909077-2908710 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 477-852 |
| Cow position: | chr13:4872446-4872817 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 477-852 |
| Cow position: | chr13:20542994-20542628 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 138 |
| Conread position: | 477-852 |
| Cow position: | chr13:21840829-21840454 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 114 |
| Conread position: | 477-852 |
| Cow position: | chr13:31831976-31832340 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 477-852 |
| Cow position: | chr13:33825370-33824989 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 225 |
| Conread position: | 477-852 |
| Cow position: | chr13:34187320-34186947 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 20 |
| Conread position: | 477-852 |
| Cow position: | chr13:54283962-54284321 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 54 |
| Conread position: | 477-852 |
| Cow position: | chr13:62328212-62327844 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 94 |
| Conread position: | 477-860 |
| Cow position: | chr13:34143292-34142911 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 212 |
| Conread position: | 477-873 |
| Cow position: | chr13:34936507-34936905 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 104 |
| Conread position: | 478-851 |
| Cow position: | chr13:23410626-23410254 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 49 |
| Conread position: | 479-851 |
| Cow position: | chr13:30140363-30140734 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 484-771 |
| Cow position: | chr13:13046446-13046162 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 192 |
| Conread position: | 488-820 |
| Cow position: | chr13:3338224-3338554 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 96 |
| Conread position: | 491-852 |
| Cow position: | chr13:33928168-33927822 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 497-822 |
| Cow position: | chr13:3058606-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 79 |
| Conread position: | 497-852 |
| Cow position: | chr13:17307872-17308215 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 64 |
| Conread position: | 497-852 |
| Cow position: | chr13:30245347-30244993 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 497-852 |
| Cow position: | chr13:31734685-31734341 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 497-852 |
| Cow position: | chr13:32986657-32986310 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 498-640 |
| Cow position: | chr13:61951581-61951721 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 518-848 |
| Cow position: | chr13:34326268-34325939 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 153 |
| Conread position: | 518-849 |
| Cow position: | chr13:9043919-9044248 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 63 |
| Conread position: | 520-852 |
| Cow position: | chr13:34692573-34692903 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 570-796 |
| Cow position: | chr13:34027731-34027958 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 19, 125 |
| Conread position: | 589-736 |
| Cow position: | chr13:32606694-32606548 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 594-847 |
| Cow position: | chr13:47859937-47860183 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 614-852 |
| Cow position: | chr13:13324261-13324489 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 621-852 |
| Cow position: | chr13:56730762-56730543 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 644-852 |
| Cow position: | chr13:49973215-49973423 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 660-852 |
| Cow position: | chr13:23003966-23003775 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 177, 0 |
Show alignments to all cow chromosomes.