Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 223-429 |
| Cow position: | chr14:46083386-46083586 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 225-430 |
| Cow position: | chr14:45304879-45304677 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 466-852 |
| Cow position: | chr14:38533066-38532677 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 169 |
| Conread position: | 467-852 |
| Cow position: | chr14:45767242-45767623 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 26 |
| Conread position: | 469-851 |
| Cow position: | chr14:44856191-44855811 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 304 |
| Conread position: | 469-852 |
| Cow position: | chr14:13660758-13660372 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 297 |
| Conread position: | 475-771 |
| Cow position: | chr14:44780665-44780380 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 475-849 |
| Cow position: | chr14:44783005-44782641 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 64 |
| Conread position: | 475-850 |
| Cow position: | chr14:46083869-46084239 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 57 |
| Conread position: | 475-852 |
| Cow position: | chr14:35387890-35387517 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 298 |
| Conread position: | 475-852 |
| Cow position: | chr14:35928417-35928792 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 10, 147 |
| Conread position: | 476-805 |
| Cow position: | chr14:11154911-11154584 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 476-833 |
| Cow position: | chr14:41755117-41755458 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 223, 52 |
| Conread position: | 476-848 |
| Cow position: | chr14:13272505-13272872 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 476-848 |
| Cow position: | chr14:48255070-48254697 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 186 |
| Conread position: | 476-849 |
| Cow position: | chr14:19329024-19328655 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 476-849 |
| Cow position: | chr14:30597133-30596767 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 264 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 62, 190 |
| Conread position: | 476-851 |
| Cow position: | chr14:14309816-14309457 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 476-851 |
| Cow position: | chr14:40170437-40170070 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 123, 205 |
| Conread position: | 476-852 |
| Cow position: | chr14:5528309-5528678 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:7471618-7471991 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:13302273-13302647 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:16274055-16273679 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 362 |
| Conread position: | 476-852 |
| Cow position: | chr14:17684641-17685012 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:22032440-22032069 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:37223144-37223519 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:45079779-45080137 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 476-852 |
| Cow position: | chr14:50109822-50110188 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 41 |
| Conread position: | 477-649 |
| Cow position: | chr14:17241484-17241650 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 477-673 |
| Cow position: | chr14:50134158-50134349 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 477-676 |
| Cow position: | chr14:1499996-1500196 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 39 |
| Conread position: | 477-702 |
| Cow position: | chr14:14422764-14422543 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 477-709 |
| Cow position: | chr14:44551298-44551530 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 477-718 |
| Cow position: | chr14:41085564-41085328 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 0 |
| Conread position: | 477-820 |
| Cow position: | chr14:40338957-40339292 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 59 |
| Conread position: | 477-827 |
| Cow position: | chr14:23529749-23529416 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 347, 49 |
| Conread position: | 477-833 |
| Cow position: | chr14:41670975-41671331 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 88, 220 |
| Conread position: | 477-833 |
| Cow position: | chr14:45712736-45712378 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 89 |
| Conread position: | 477-833 |
| Cow position: | chr14:47623814-47624168 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 477-844 |
| Cow position: | chr14:48150697-48150334 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 477-848 |
| Cow position: | chr14:44685291-44685661 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 477-849 |
| Cow position: | chr14:11467843-11468203 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 477-849 |
| Cow position: | chr14:44376682-44377049 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 477-849 |
| Cow position: | chr14:45160107-45160480 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 205 |
| Conread position: | 477-851 |
| Cow position: | chr14:23690983-23690609 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 264 |
| Conread position: | 477-851 |
| Cow position: | chr14:47589121-47589490 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 153, 94 |
| Conread position: | 477-851 |
| Cow position: | chr14:48703850-48704214 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 86, 106 |
| Conread position: | 477-852 |
| Cow position: | chr14:749819-750186 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 84 |
| Conread position: | 477-852 |
| Cow position: | chr14:17492208-17491840 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 84 |
| Conread position: | 477-852 |
| Cow position: | chr14:20781702-20782073 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 477-852 |
| Cow position: | chr14:28994612-28994238 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 0 |
| Conread position: | 477-852 |
| Cow position: | chr14:30585693-30585328 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 215 |
| Conread position: | 477-852 |
| Cow position: | chr14:36967501-36967871 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 94 |
| Conread position: | 477-852 |
| Cow position: | chr14:44225660-44226022 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 477-852 |
| Cow position: | chr14:45850471-45850840 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 477-874 |
| Cow position: | chr14:45833401-45833799 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 202 |
| Conread position: | 478-851 |
| Cow position: | chr14:31607676-31607314 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 210 |
| Conread position: | 478-873 |
| Cow position: | chr14:22018646-22019036 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 198 |
| Conread position: | 480-852 |
| Cow position: | chr14:44130174-44130535 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 488-851 |
| Cow position: | chr14:7831280-7830924 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 46 |
| Conread position: | 488-852 |
| Cow position: | chr14:45916655-45917032 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 261 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 264, 121 |
| Conread position: | 489-727 |
| Cow position: | chr14:13778119-13778357 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 494-749 |
| Cow position: | chr14:34774858-34775109 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 77 |
| Conread position: | 497-670 |
| Cow position: | chr14:2283251-2283424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 497-852 |
| Cow position: | chr14:9044828-9045182 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 497-852 |
| Cow position: | chr14:23256620-23256976 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 194 |
| Conread position: | 497-852 |
| Cow position: | chr14:29048631-29048285 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 46 |
| Conread position: | 498-678 |
| Cow position: | chr14:15277593-15277407 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 498-849 |
| Cow position: | chr14:43552686-43553034 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 498-852 |
| Cow position: | chr14:45672779-45672428 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 501-852 |
| Cow position: | chr14:16920415-16920072 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 513-852 |
| Cow position: | chr14:17001776-17001438 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 0 |
| Conread position: | 528-843 |
| Cow position: | chr14:44421852-44422164 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 528-870 |
| Cow position: | chr14:47921305-47921641 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 44 |
| Conread position: | 532-848 |
| Cow position: | chr14:45205373-45205693 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 168, 50 |
| Conread position: | 553-852 |
| Cow position: | chr14:42151643-42151939 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 571-852 |
| Cow position: | chr14:33394443-33394160 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 253 |
| Conread position: | 581-851 |
| Cow position: | chr14:12608559-12608824 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 99, 51 |
| Conread position: | 641-852 |
| Cow position: | chr14:45029706-45029499 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 657-852 |
| Cow position: | chr14:23901378-23901184 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 659-852 |
| Cow position: | chr14:2283764-2283956 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 667-852 |
| Cow position: | chr14:46464503-46464687 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 667-852 |
| Cow position: | chr14:50134505-50134687 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 122, 90 |
| Conread position: | 668-851 |
| Cow position: | chr14:1500467-1500645 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 668-852 |
| Cow position: | chr14:15277144-15276963 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 671-852 |
| Cow position: | chr14:48824053-48824230 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 59, 103 |
Show alignments to all cow chromosomes.