Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 211-430
Cow position: chr16:15368683-15368902 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 152
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 201, 54

Conread position: 221-428
Cow position: chr16:16687172-16687378 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 146
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 65, 158

Conread position: 221-471
Cow position: chr16:29031336-29031575 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 210, 74

Conread position: 231-428
Cow position: chr16:32934402-32934597 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 135
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 146, 0

Conread position: 449-845
Cow position: chr16:49236242-49235851 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 77

Conread position: 462-852
Cow position: chr16:49257688-49257313 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 177

Conread position: 466-852
Cow position: chr16:11052059-11052432 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 118

Conread position: 467-852
Cow position: chr16:2239842-2239464 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 0

Conread position: 469-860
Cow position: chr16:36282285-36282678 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 55

Conread position: 474-690
Cow position: chr16:15369337-15369544 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 78, 0

Conread position: 474-841
Cow position: chr16:26662648-26663009 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 81

Conread position: 475-842
Cow position: chr16:42740521-42740157 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 126

Conread position: 475-849
Cow position: chr16:25084520-25084889 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 49

Conread position: 475-852
Cow position: chr16:5660762-5661131 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 87

Conread position: 476-648
Cow position: chr16:14666891-14666719 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 476-769
Cow position: chr16:9777028-9777321 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 476-828
Cow position: chr16:7676796-7676453 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 476-852
Cow position: chr16:1568550-1568184 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 48

Conread position: 476-852
Cow position: chr16:2484240-2483869 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr16:2728416-2728030 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 228

Conread position: 476-852
Cow position: chr16:8817208-8816834 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 0

Conread position: 476-852
Cow position: chr16:10204518-10204146 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 276

Conread position: 476-852
Cow position: chr16:10437154-10437513 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr16:15183703-15184074 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr16:15491610-15491979 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 476-852
Cow position: chr16:23253603-23253234 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 476-852
Cow position: chr16:24881790-24881420 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 476-852
Cow position: chr16:25340868-25341239 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr16:25440511-25440888 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 195

Conread position: 476-852
Cow position: chr16:25458578-25458201 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 195

Conread position: 476-852
Cow position: chr16:28472199-28471824 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr16:29045928-29046292 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 67

Conread position: 476-852
Cow position: chr16:31593009-31592634 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 117

Conread position: 476-852
Cow position: chr16:40297278-40296904 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 0

Conread position: 476-852
Cow position: chr16:43898371-43897997 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 76

Conread position: 477-691
Cow position: chr16:21185179-21185393 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 87, 99

Conread position: 477-744
Cow position: chr16:14422614-14422881 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 96, 67

Conread position: 477-771
Cow position: chr16:32935052-32935327 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 50, 0

Conread position: 477-782
Cow position: chr16:19713950-19713646 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 210

Conread position: 477-849
Cow position: chr16:5918382-5918753 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 100

Conread position: 477-849
Cow position: chr16:47562594-47562954 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 253
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 84, 45

Conread position: 477-850
Cow position: chr16:44964950-44965321 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 262
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 107, 75

Conread position: 477-851
Cow position: chr16:9929454-9929814 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 251
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 106, 41

Conread position: 477-851
Cow position: chr16:26518096-26517736 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 246
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 90, 52

Conread position: 477-851
Cow position: chr16:29982172-29982553 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 253
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 8, 89

Conread position: 477-851
Cow position: chr16:36232699-36232335 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 256
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 272, 75

Conread position: 477-851
Cow position: chr16:54647232-54647597 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 477-852
Cow position: chr16:408134-407764 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 0

Conread position: 477-852
Cow position: chr16:1430125-1430494 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 0

Conread position: 477-852
Cow position: chr16:6942520-6942894 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 94

Conread position: 477-852
Cow position: chr16:12539027-12538653 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 0

Conread position: 477-852
Cow position: chr16:18688220-18687852 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 53

Conread position: 477-852
Cow position: chr16:25157318-25156949 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 29

Conread position: 477-852
Cow position: chr16:32605725-32606099 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 94

Conread position: 477-853
Cow position: chr16:20255409-20255038 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 0

Conread position: 477-874
Cow position: chr16:7905541-7905937 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 179

Conread position: 478-831
Cow position: chr16:9457428-9457768 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 237
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 85, 7

Conread position: 478-852
Cow position: chr16:15565649-15566020 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 480-852
Cow position: chr16:6549620-6549252 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 480-852
Cow position: chr16:29676404-29676038 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 481-645
Cow position: chr16:39818526-39818692 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 97, 0

Conread position: 482-640
Cow position: chr16:5483419-5483263 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 83, 0

Conread position: 482-852
Cow position: chr16:27734902-27734533 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 0

Conread position: 484-852
Cow position: chr16:52815710-52815364 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 251
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 66, 0

Conread position: 487-852
Cow position: chr16:23982219-23982581 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 0

Conread position: 497-832
Cow position: chr16:31677-32000 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 497-844
Cow position: chr16:4303552-4303210 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 79

Conread position: 497-852
Cow position: chr16:28171442-28171089 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 103

Conread position: 498-851
Cow position: chr16:14669212-14669567 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 226
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 65, 153

Conread position: 500-796
Cow position: chr16:10376342-10376057 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 182
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 0

Conread position: 504-765
Cow position: chr16:29031841-29032100 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 236, 0

Conread position: 513-841
Cow position: chr16:16687801-16688131 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 263

Conread position: 517-849
Cow position: chr16:40887323-40886990 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 238
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 135, 12

Conread position: 520-849
Cow position: chr16:25152726-25153043 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 60, 29

Conread position: 520-851
Cow position: chr16:5888421-5888753 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 119

Conread position: 566-852
Cow position: chr16:2411983-2411700 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 578-852
Cow position: chr16:16276509-16276236 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 10, 202

Conread position: 582-852
Cow position: chr16:10808166-10808427 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 200
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 17, 111

Conread position: 595-848
Cow position: chr16:11111918-11111672 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 166
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 611-852
Cow position: chr16:25187673-25187913 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 224, 0

Conread position: 613-849
Cow position: chr16:836071-836297 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 170
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 615-852
Cow position: chr16:36362312-36362090 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 80, 0

Conread position: 621-852
Cow position: chr16:56551170-56551397 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 0

Conread position: 635-852
Cow position: chr16:39820694-39820902 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 161
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 50, 0

Conread position: 636-810
Cow position: chr16:56320894-56321068 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 73, 68

Conread position: 667-852
Cow position: chr16:34529413-34529595 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 152, 0

Conread position: 676-852
Cow position: chr16:5483418-5483593 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 18, 22

Conread position: 696-849
Cow position: chr16:14666714-14666562 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 141, 0

Show alignments to all cow chromosomes.