Cow genome map
Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
Conread position: | 225-428 |
Cow position: | chr17:15370078-15370279 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 142 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 43, 35 |
Conread position: | 228-422 |
Cow position: | chr17:15416270-15416463 (view UCSC Genome Browser custom track) |
Alignm length: | 196 |
Alignm identity: | 135 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 79, 37 |
Conread position: | 454-852 |
Cow position: | chr17:2173335-2173728 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 50 |
Conread position: | 466-683 |
Cow position: | chr17:22131403-22131622 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 157 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 466-851 |
Cow position: | chr17:44853461-44853087 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 46 |
Conread position: | 467-851 |
Cow position: | chr17:35591689-35592062 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 467-852 |
Cow position: | chr17:28109560-28109932 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 467-852 |
Cow position: | chr17:40803869-40804245 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 7, 139 |
Conread position: | 468-852 |
Cow position: | chr17:13857308-13856921 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 248, 373 |
Conread position: | 469-727 |
Cow position: | chr17:32024730-32024472 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 202 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 205 |
Conread position: | 474-852 |
Cow position: | chr17:4059580-4059950 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 12 |
Conread position: | 475-852 |
Cow position: | chr17:3643363-3642988 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 0 |
Conread position: | 475-852 |
Cow position: | chr17:14893630-14894009 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 54 |
Conread position: | 476-683 |
Cow position: | chr17:6259177-6259382 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 153 |
Alignm E-value: | 5e-34 |
Alignm gaps (pig, cow): | 204, 166 |
Conread position: | 476-849 |
Cow position: | chr17:1383338-1382969 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 100 |
Conread position: | 476-852 |
Cow position: | chr17:13929147-13929516 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 97, 0 |
Conread position: | 476-852 |
Cow position: | chr17:15157479-15157115 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 0 |
Conread position: | 476-852 |
Cow position: | chr17:16860096-16859708 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 376 |
Conread position: | 476-852 |
Cow position: | chr17:18104207-18103832 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 0 |
Conread position: | 476-852 |
Cow position: | chr17:24633430-24633802 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 101 |
Conread position: | 476-852 |
Cow position: | chr17:25737137-25737511 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 189, 0 |
Conread position: | 476-873 |
Cow position: | chr17:15322304-15322682 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 0 |
Conread position: | 477-674 |
Cow position: | chr17:55205-55011 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 142 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 477-756 |
Cow position: | chr17:1284282-1284006 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 0 |
Conread position: | 477-803 |
Cow position: | chr17:11782845-11783171 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 94 |
Conread position: | 477-823 |
Cow position: | chr17:39933162-39933502 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 121, 0 |
Conread position: | 477-828 |
Cow position: | chr17:6002539-6002183 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 174 |
Conread position: | 477-838 |
Cow position: | chr17:2261591-2261944 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 84 |
Conread position: | 477-841 |
Cow position: | chr17:14308831-14308466 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 238 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 112, 91 |
Conread position: | 477-848 |
Cow position: | chr17:22430003-22429638 (view UCSC Genome Browser custom track) |
Alignm length: | 372 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 477-851 |
Cow position: | chr17:152985-152629 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 261 |
Alignm E-value: | 8e-38 |
Alignm gaps (pig, cow): | 31, 90 |
Conread position: | 477-851 |
Cow position: | chr17:4081126-4081494 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 211 |
Conread position: | 477-851 |
Cow position: | chr17:15370555-15370923 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 477-851 |
Cow position: | chr17:16889605-16889970 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 477-851 |
Cow position: | chr17:20401150-20401535 (view UCSC Genome Browser custom track) |
Alignm length: | 393 |
Alignm identity: | 271 |
Alignm E-value: | 9.99995e-41 |
Alignm gaps (pig, cow): | 79, 34 |
Conread position: | 477-852 |
Cow position: | chr17:2579036-2579406 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 0 |
Conread position: | 477-852 |
Cow position: | chr17:8208585-8208955 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 117 |
Conread position: | 477-852 |
Cow position: | chr17:9653975-9653608 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 99 |
Conread position: | 477-852 |
Cow position: | chr17:14217550-14217176 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 215 |
Conread position: | 477-852 |
Cow position: | chr17:20666252-20665878 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 99 |
Conread position: | 477-852 |
Cow position: | chr17:22160390-22160764 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 94 |
Conread position: | 477-852 |
Cow position: | chr17:27345282-27345654 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 155, 0 |
Conread position: | 477-860 |
Cow position: | chr17:23857576-23857181 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 104 |
Conread position: | 478-852 |
Cow position: | chr17:11088245-11087876 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 0 |
Conread position: | 480-852 |
Cow position: | chr17:2286854-2287234 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 224 |
Conread position: | 487-852 |
Cow position: | chr17:2249097-2248734 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 353, 0 |
Conread position: | 488-852 |
Cow position: | chr17:14326008-14325648 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 178, 0 |
Conread position: | 497-649 |
Cow position: | chr17:6119645-6119797 (view UCSC Genome Browser custom track) |
Alignm length: | 153 |
Alignm identity: | 114 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 497-833 |
Cow position: | chr17:43988014-43988365 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 193 |
Conread position: | 497-843 |
Cow position: | chr17:4294878-4295206 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 229 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 497-852 |
Cow position: | chr17:228801-228454 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 497-852 |
Cow position: | chr17:15143866-15143521 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 255 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 135, 19 |
Conread position: | 497-852 |
Cow position: | chr17:15435289-15435639 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 64 |
Conread position: | 497-852 |
Cow position: | chr17:19269867-19269518 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 19 |
Conread position: | 497-852 |
Cow position: | chr17:24780542-24780896 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 263 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 338, 0 |
Conread position: | 505-852 |
Cow position: | chr17:20088253-20087883 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 258 |
Alignm E-value: | 1e-39 |
Alignm gaps (pig, cow): | 90, 315 |
Conread position: | 518-851 |
Cow position: | chr17:2146730-2147047 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 230 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 520-852 |
Cow position: | chr17:6089644-6089313 (view UCSC Genome Browser custom track) |
Alignm length: | 334 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 56 |
Conread position: | 531-841 |
Cow position: | chr17:2737907-2738216 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 0 |
Conread position: | 532-860 |
Cow position: | chr17:15849930-15850256 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 235 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 256, 20 |
Conread position: | 534-852 |
Cow position: | chr17:1879623-1879940 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 72 |
Conread position: | 589-852 |
Cow position: | chr17:20183640-20183381 (view UCSC Genome Browser custom track) |
Alignm length: | 265 |
Alignm identity: | 206 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 114 |
Conread position: | 598-852 |
Cow position: | chr17:18185928-18185685 (view UCSC Genome Browser custom track) |
Alignm length: | 255 |
Alignm identity: | 180 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 17, 0 |
Conread position: | 598-858 |
Cow position: | chr17:1946571-1946832 (view UCSC Genome Browser custom track) |
Alignm length: | 263 |
Alignm identity: | 193 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 243 |
Conread position: | 667-850 |
Cow position: | chr17:22131898-22132077 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 135 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 105, 0 |
Conread position: | 668-852 |
Cow position: | chr17:6259510-6259693 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 136 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 169, 0 |
Conread position: | 733-860 |
Cow position: | chr17:18027027-18026902 (view UCSC Genome Browser custom track) |
Alignm length: | 128 |
Alignm identity: | 98 |
Alignm E-value: | 4e-21 |
Alignm gaps (pig, cow): | 106, 0 |
Show alignments to all cow chromosomes.