Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 225-428
Cow position: chr17:15370078-15370279 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 43, 35

Conread position: 228-422
Cow position: chr17:15416270-15416463 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 135
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 79, 37

Conread position: 454-852
Cow position: chr17:2173335-2173728 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 50

Conread position: 466-683
Cow position: chr17:22131403-22131622 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 157
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 466-851
Cow position: chr17:44853461-44853087 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 46

Conread position: 467-851
Cow position: chr17:35591689-35592062 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 467-852
Cow position: chr17:28109560-28109932 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 467-852
Cow position: chr17:40803869-40804245 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 139

Conread position: 468-852
Cow position: chr17:13857308-13856921 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 373

Conread position: 469-727
Cow position: chr17:32024730-32024472 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 205

Conread position: 474-852
Cow position: chr17:4059580-4059950 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 12

Conread position: 475-852
Cow position: chr17:3643363-3642988 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 475-852
Cow position: chr17:14893630-14894009 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 54

Conread position: 476-683
Cow position: chr17:6259177-6259382 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 153
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 204, 166

Conread position: 476-849
Cow position: chr17:1383338-1382969 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 100

Conread position: 476-852
Cow position: chr17:13929147-13929516 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 476-852
Cow position: chr17:15157479-15157115 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 476-852
Cow position: chr17:16860096-16859708 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 376

Conread position: 476-852
Cow position: chr17:18104207-18103832 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr17:24633430-24633802 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 101

Conread position: 476-852
Cow position: chr17:25737137-25737511 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 0

Conread position: 476-873
Cow position: chr17:15322304-15322682 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 477-674
Cow position: chr17:55205-55011 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 142
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 68, 0

Conread position: 477-756
Cow position: chr17:1284282-1284006 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 477-803
Cow position: chr17:11782845-11783171 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 94

Conread position: 477-823
Cow position: chr17:39933162-39933502 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 477-828
Cow position: chr17:6002539-6002183 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 174

Conread position: 477-838
Cow position: chr17:2261591-2261944 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 84

Conread position: 477-841
Cow position: chr17:14308831-14308466 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 238
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 112, 91

Conread position: 477-848
Cow position: chr17:22430003-22429638 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 477-851
Cow position: chr17:152985-152629 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 261
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 31, 90

Conread position: 477-851
Cow position: chr17:4081126-4081494 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 211

Conread position: 477-851
Cow position: chr17:15370555-15370923 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 477-851
Cow position: chr17:16889605-16889970 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 477-851
Cow position: chr17:20401150-20401535 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 271
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 79, 34

Conread position: 477-852
Cow position: chr17:2579036-2579406 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 477-852
Cow position: chr17:8208585-8208955 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 117

Conread position: 477-852
Cow position: chr17:9653975-9653608 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr17:14217550-14217176 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 215

Conread position: 477-852
Cow position: chr17:20666252-20665878 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr17:22160390-22160764 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 94

Conread position: 477-852
Cow position: chr17:27345282-27345654 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 477-860
Cow position: chr17:23857576-23857181 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 104

Conread position: 478-852
Cow position: chr17:11088245-11087876 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 0

Conread position: 480-852
Cow position: chr17:2286854-2287234 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 224

Conread position: 487-852
Cow position: chr17:2249097-2248734 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 0

Conread position: 488-852
Cow position: chr17:14326008-14325648 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 497-649
Cow position: chr17:6119645-6119797 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 497-833
Cow position: chr17:43988014-43988365 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 193

Conread position: 497-843
Cow position: chr17:4294878-4295206 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 84, 0

Conread position: 497-852
Cow position: chr17:228801-228454 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 497-852
Cow position: chr17:15143866-15143521 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 255
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 135, 19

Conread position: 497-852
Cow position: chr17:15435289-15435639 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 64

Conread position: 497-852
Cow position: chr17:19269867-19269518 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 19

Conread position: 497-852
Cow position: chr17:24780542-24780896 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 0

Conread position: 505-852
Cow position: chr17:20088253-20087883 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 258
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 90, 315

Conread position: 518-851
Cow position: chr17:2146730-2147047 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 230
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 9, 0

Conread position: 520-852
Cow position: chr17:6089644-6089313 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 56

Conread position: 531-841
Cow position: chr17:2737907-2738216 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 532-860
Cow position: chr17:15849930-15850256 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 20

Conread position: 534-852
Cow position: chr17:1879623-1879940 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 72

Conread position: 589-852
Cow position: chr17:20183640-20183381 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 114

Conread position: 598-852
Cow position: chr17:18185928-18185685 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 180
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 598-858
Cow position: chr17:1946571-1946832 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 243

Conread position: 667-850
Cow position: chr17:22131898-22132077 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 105, 0

Conread position: 668-852
Cow position: chr17:6259510-6259693 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 169, 0

Conread position: 733-860
Cow position: chr17:18027027-18026902 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 106, 0

Show alignments to all cow chromosomes.