Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 453-852 |
| Cow position: | chr18:1520785-1521184 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 139 |
| Conread position: | 457-849 |
| Cow position: | chr18:40478048-40478440 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 6 |
| Conread position: | 466-851 |
| Cow position: | chr18:51257653-51258032 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 118 |
| Conread position: | 468-852 |
| Cow position: | chr18:54172166-54171789 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 469-850 |
| Cow position: | chr18:39748257-39748632 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 43 |
| Conread position: | 469-852 |
| Cow position: | chr18:32293450-32293824 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 108 |
| Conread position: | 469-852 |
| Cow position: | chr18:35335159-35335535 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 344 |
| Conread position: | 475-858 |
| Cow position: | chr18:22199371-22199747 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 476-689 |
| Cow position: | chr18:14129976-14130188 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 476-759 |
| Cow position: | chr18:54002185-54002456 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 476-810 |
| Cow position: | chr18:37585982-37585649 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 116 |
| Conread position: | 476-815 |
| Cow position: | chr18:25349720-25350059 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-849 |
| Cow position: | chr18:45958384-45958736 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 476-851 |
| Cow position: | chr18:16176925-16176557 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 229 |
| Conread position: | 476-852 |
| Cow position: | chr18:14415660-14416032 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 476-852 |
| Cow position: | chr18:22602168-22602543 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 101 |
| Conread position: | 476-852 |
| Cow position: | chr18:23797332-23797703 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 0 |
| Conread position: | 476-852 |
| Cow position: | chr18:27838620-27838259 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 40 |
| Conread position: | 476-852 |
| Cow position: | chr18:28974217-28973847 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 476-852 |
| Cow position: | chr18:36508014-36508389 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr18:37504747-37505119 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 99 |
| Conread position: | 476-852 |
| Cow position: | chr18:41841144-41840769 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 477-625 |
| Cow position: | chr18:29236461-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 477-810 |
| Cow position: | chr18:33268526-33268857 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 48 |
| Conread position: | 477-848 |
| Cow position: | chr18:29900009-29900362 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 24, 82 |
| Conread position: | 477-848 |
| Cow position: | chr18:51480522-51480890 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 204 |
| Conread position: | 477-848 |
| Cow position: | chr18:51660106-51660469 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 84 |
| Conread position: | 477-849 |
| Cow position: | chr18:33335557-33335920 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 477-849 |
| Cow position: | chr18:54024673-54024306 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 126 |
| Conread position: | 477-852 |
| Cow position: | chr18:17992879-17992507 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 477-852 |
| Cow position: | chr18:23944689-23944319 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 477-852 |
| Cow position: | chr18:33358547-33358923 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 198 |
| Conread position: | 477-852 |
| Cow position: | chr18:33953885-33953512 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 477-852 |
| Cow position: | chr18:43147243-43146870 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 296 |
| Conread position: | 477-852 |
| Cow position: | chr18:44621439-44621815 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 217 |
| Conread position: | 477-852 |
| Cow position: | chr18:47719887-47719528 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 212 |
| Conread position: | 477-852 |
| Cow position: | chr18:51310269-51310636 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 101 |
| Conread position: | 477-852 |
| Cow position: | chr18:55089243-55088869 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 215 |
| Conread position: | 478-851 |
| Cow position: | chr18:2019996-2019631 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 478-851 |
| Cow position: | chr18:24577456-24577080 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 56, 236 |
| Conread position: | 480-855 |
| Cow position: | chr18:29069950-29070310 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 135, 82 |
| Conread position: | 481-852 |
| Cow position: | chr18:48221565-48221933 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 485-851 |
| Cow position: | chr18:37599828-37599474 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 487-836 |
| Cow position: | chr18:32651688-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 206 |
| Conread position: | 488-851 |
| Cow position: | chr18:18897206-18897551 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 488-852 |
| Cow position: | chr18:27986722-27987083 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 497-849 |
| Cow position: | chr18:16078405-16078752 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 497-852 |
| Cow position: | chr18:11275386-11275050 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 497-852 |
| Cow position: | chr18:19352080-19352441 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 497-852 |
| Cow position: | chr18:47741720-47742074 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 195 |
| Conread position: | 498-851 |
| Cow position: | chr18:9187059-9186712 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 498-852 |
| Cow position: | chr18:16660301-16659949 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 0 |
| Conread position: | 501-805 |
| Cow position: | chr18:19540164-19539865 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 53 |
| Conread position: | 513-815 |
| Cow position: | chr18:51464751-51464457 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 519-851 |
| Cow position: | chr18:44601267-44601592 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 44, 55 |
| Conread position: | 548-852 |
| Cow position: | chr18:6869504-6869201 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 124 |
| Conread position: | 583-851 |
| Cow position: | chr18:43200854-43201112 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 594-850 |
| Cow position: | chr18:16533782-16534032 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 68 |
| Conread position: | 604-852 |
| Cow position: | chr18:53785649-53785892 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 74 |
| Conread position: | 617-843 |
| Cow position: | chr18:29763279-29763503 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 617-852 |
| Cow position: | chr18:51689449-51689682 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 637-851 |
| Cow position: | chr18:2887181-2886966 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 28, 202 |
| Conread position: | 646-804 |
| Cow position: | chr18:40345472-40345315 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 646-852 |
| Cow position: | chr18:29236669-29236868 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 656-841 |
| Cow position: | chr18:22869616-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 660-852 |
| Cow position: | chr18:54044836-54044647 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 670-852 |
| Cow position: | chr18:51341561-51341742 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 22 |
Show alignments to all cow chromosomes.