Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 221-420
Cow position: chr19:39687209-39687406 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 33, 45

Conread position: 459-852
Cow position: chr19:4385154-4385541 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 463-749
Cow position: chr19:32238184-32237899 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 209
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 45

Conread position: 466-851
Cow position: chr19:359814-359445 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 253
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 11, 0

Conread position: 467-849
Cow position: chr19:15953553-15953911 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 253
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 87, 0

Conread position: 467-852
Cow position: chr19:32665208-32665590 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 247

Conread position: 475-852
Cow position: chr19:34106-34480 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 155

Conread position: 475-852
Cow position: chr19:32183761-32183395 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 245
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 98

Conread position: 476-625
Cow position: chr19:544205-544056 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 108
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 476-641
Cow position: chr19:801676-801841 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 88, 106

Conread position: 476-669
Cow position: chr19:33872929-33873117 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 83, 0

Conread position: 476-803
Cow position: chr19:685540-685855 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 85, 0

Conread position: 476-852
Cow position: chr19:171896-172271 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr19:203648-204021 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 105

Conread position: 476-852
Cow position: chr19:439961-439583 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 362

Conread position: 476-852
Cow position: chr19:27211873-27212243 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 229
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 320, 123

Conread position: 476-852
Cow position: chr19:28581953-28581596 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 50

Conread position: 476-852
Cow position: chr19:33941297-33941672 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr19:39390208-39390576 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 476-852
Cow position: chr19:40887960-40887592 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 77

Conread position: 476-852
Cow position: chr19:55078431-55078806 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-856
Cow position: chr19:40852745-40852367 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 359, 0

Conread position: 477-690
Cow position: chr19:350888-350670 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 87, 68

Conread position: 477-788
Cow position: chr19:42649379-42649079 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 200
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 73, 0

Conread position: 477-849
Cow position: chr19:32212374-32212013 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 477-850
Cow position: chr19:548082-548446 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 353, 128

Conread position: 477-850
Cow position: chr19:20125320-20125677 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 252
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 153, 40

Conread position: 477-852
Cow position: chr19:76546-76193 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 256
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 96, 0

Conread position: 477-852
Cow position: chr19:4252671-4252299 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 201

Conread position: 477-852
Cow position: chr19:4533057-4532692 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 140

Conread position: 477-852
Cow position: chr19:10672620-10672246 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 0

Conread position: 477-852
Cow position: chr19:29209253-29209621 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 477-852
Cow position: chr19:30371962-30372342 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 196

Conread position: 477-852
Cow position: chr19:31341410-31341766 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 477-852
Cow position: chr19:32193270-32193637 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 73

Conread position: 477-852
Cow position: chr19:32244366-32244744 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr19:35978954-35979324 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 96

Conread position: 477-852
Cow position: chr19:39688236-39688589 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 477-852
Cow position: chr19:43143402-43143776 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 130

Conread position: 477-874
Cow position: chr19:416335-416735 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 48

Conread position: 478-795
Cow position: chr19:378198-377871 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 230
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 100, 156

Conread position: 478-874
Cow position: chr19:36036054-36036441 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 256
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 385, 121

Conread position: 480-685
Cow position: chr19:36477050-36477250 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 141
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 480-827
Cow position: chr19:1031803-1032138 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 487-771
Cow position: chr19:261136-261416 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 103

Conread position: 487-852
Cow position: chr19:7488009-7488373 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 489-639
Cow position: chr19:25622719-25622569 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 75, 87

Conread position: 495-838
Cow position: chr19:28592984-28593324 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 66

Conread position: 497-815
Cow position: chr19:52152543-52152237 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 64

Conread position: 497-852
Cow position: chr19:37614-37956 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 497-852
Cow position: chr19:772316-772659 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 97

Conread position: 497-852
Cow position: chr19:7341778-7342128 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 88

Conread position: 497-855
Cow position: chr19:171037-170679 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 198

Conread position: 503-851
Cow position: chr19:20111512-20111169 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 228
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 61, 68

Conread position: 520-849
Cow position: chr19:32223698-32223381 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 229
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 23, 42

Conread position: 523-804
Cow position: chr19:35376286-35376572 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 6, 149

Conread position: 545-848
Cow position: chr19:893848-893556 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 555-876
Cow position: chr19:561730-561422 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 225
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 37, 0

Conread position: 573-852
Cow position: chr19:39546413-39546688 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 19

Conread position: 615-852
Cow position: chr19:27052939-27052709 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 180
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 59, 0

Conread position: 628-848
Cow position: chr19:543790-543570 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 59, 102

Conread position: 630-849
Cow position: chr19:28376370-28376579 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 167
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 144, 0

Conread position: 668-852
Cow position: chr19:33873304-33873487 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 142
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 169, 0

Conread position: 687-852
Cow position: chr19:350387-350223 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 152, 0

Conread position: 694-851
Cow position: chr19:6553516-6553670 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 78, 0

Show alignments to all cow chromosomes.