Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 221-428 |
| Cow position: | chr20:28592734-28592937 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 443-860 |
| Cow position: | chr20:5483803-5484213 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 467-852 |
| Cow position: | chr20:15064397-15064785 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 377 |
| Conread position: | 469-851 |
| Cow position: | chr20:20755795-20755407 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 9, 54 |
| Conread position: | 474-683 |
| Cow position: | chr20:8004873-8004663 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 475-852 |
| Cow position: | chr20:4800004-4799634 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 476-620 |
| Cow position: | chr20:35118890-35119033 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 476-629 |
| Cow position: | chr20:15291690-15291843 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-676 |
| Cow position: | chr20:29947828-29948028 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-848 |
| Cow position: | chr20:12439117-12438747 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 476-848 |
| Cow position: | chr20:27868840-27869211 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 476-852 |
| Cow position: | chr20:3252497-3252117 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 302 |
| Conread position: | 476-852 |
| Cow position: | chr20:5534584-5534955 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 476-852 |
| Cow position: | chr20:5561073-5560698 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 100 |
| Conread position: | 476-852 |
| Cow position: | chr20:7116828-7116452 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 361 |
| Conread position: | 476-852 |
| Cow position: | chr20:18315937-18315567 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 113 |
| Conread position: | 476-852 |
| Cow position: | chr20:21393215-21393580 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 476-852 |
| Cow position: | chr20:23470018-23469642 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 362 |
| Conread position: | 476-852 |
| Cow position: | chr20:23798525-23798899 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 476-852 |
| Cow position: | chr20:25851348-25850974 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 476-852 |
| Cow position: | chr20:28160423-28160797 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 276 |
| Conread position: | 476-852 |
| Cow position: | chr20:30683981-30684352 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 476-861 |
| Cow position: | chr20:13762548-13762927 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 477-672 |
| Cow position: | chr20:31124049-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-822 |
| Cow position: | chr20:24516514-24516854 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 337, 113 |
| Conread position: | 477-824 |
| Cow position: | chr20:2791706-2791356 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 87, 222 |
| Conread position: | 477-841 |
| Cow position: | chr20:822401-822774 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 84 |
| Conread position: | 477-851 |
| Cow position: | chr20:28593394-28593762 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 43 |
| Conread position: | 477-852 |
| Cow position: | chr20:10102899-10102532 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 27 |
| Conread position: | 477-852 |
| Cow position: | chr20:10846432-10846061 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 477-853 |
| Cow position: | chr20:15098224-15097860 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 478-828 |
| Cow position: | chr20:8371243-8370905 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 105, 47 |
| Conread position: | 478-850 |
| Cow position: | chr20:31379227-31378869 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 103 |
| Conread position: | 478-852 |
| Cow position: | chr20:3270367-3270721 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 478-852 |
| Cow position: | chr20:13757905-13758273 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 7, 187 |
| Conread position: | 480-745 |
| Cow position: | chr20:3032584-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 480-851 |
| Cow position: | chr20:35973754-35973393 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 83, 69 |
| Conread position: | 487-849 |
| Cow position: | chr20:22718026-22717681 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 487-852 |
| Cow position: | chr20:28565947-28565579 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 354 |
| Conread position: | 488-852 |
| Cow position: | chr20:24614204-24614554 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 497-851 |
| Cow position: | chr20:19437628-19437971 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 497-852 |
| Cow position: | chr20:21913990-21914343 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 504-851 |
| Cow position: | chr20:9954283-9953969 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 504-860 |
| Cow position: | chr20:8313763-8313412 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 517-744 |
| Cow position: | chr20:11276605-11276386 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 133, 38 |
| Conread position: | 570-824 |
| Cow position: | chr20:35119061-35119314 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 571-852 |
| Cow position: | chr20:35119311-35119591 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 576-851 |
| Cow position: | chr20:22206285-22206564 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 60, 150 |
| Conread position: | 581-852 |
| Cow position: | chr20:19192381-19192111 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 582-849 |
| Cow position: | chr20:13665438-13665188 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 599-852 |
| Cow position: | chr20:11679345-11679093 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 629-852 |
| Cow position: | chr20:24390168-24390381 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 179 |
| Conread position: | 668-852 |
| Cow position: | chr20:8004392-8004208 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 8, 170 |
| Conread position: | 670-838 |
| Cow position: | chr20:15291854-15292018 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 708-852 |
| Cow position: | chr20:15947519-15947376 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 131, 0 |
Show alignments to all cow chromosomes.