Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 214-428 |
| Cow position: | chr21:28873711-28873923 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 221-391 |
| Cow position: | chr21:9891057-9891224 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 221-428 |
| Cow position: | chr21:18820983-18820777 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 223-428 |
| Cow position: | chr21:23809028-23809229 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 44 |
| Conread position: | 458-849 |
| Cow position: | chr21:1292428-1292047 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 19 |
| Conread position: | 462-849 |
| Cow position: | chr21:2769709-2769327 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 120 |
| Conread position: | 466-852 |
| Cow position: | chr21:47947866-47948245 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 135 |
| Conread position: | 468-851 |
| Cow position: | chr21:6699808-6699431 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 84, 105 |
| Conread position: | 468-852 |
| Cow position: | chr21:9891366-9891730 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 469-847 |
| Cow position: | chr21:34259459-34259089 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 203 |
| Conread position: | 469-852 |
| Cow position: | chr21:34292773-34293153 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 214 |
| Conread position: | 475-852 |
| Cow position: | chr21:30600154-30599784 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 476-720 |
| Cow position: | chr21:5016269-5016023 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 88, 110 |
| Conread position: | 476-769 |
| Cow position: | chr21:40272049-40271766 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 476-838 |
| Cow position: | chr21:31559886-31559530 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 103 |
| Conread position: | 476-848 |
| Cow position: | chr21:3778529-3778898 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 46 |
| Conread position: | 476-849 |
| Cow position: | chr21:2883973-2883615 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 476-849 |
| Cow position: | chr21:48115869-48116242 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 362 |
| Conread position: | 476-852 |
| Cow position: | chr21:145681-146059 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 190 |
| Conread position: | 476-852 |
| Cow position: | chr21:1190803-1191184 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 367 |
| Conread position: | 476-852 |
| Cow position: | chr21:7267771-7267409 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 35 |
| Conread position: | 476-852 |
| Cow position: | chr21:10566440-10566809 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 114 |
| Conread position: | 476-852 |
| Cow position: | chr21:10849841-10850216 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr21:33251153-33251528 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 477-619 |
| Cow position: | chr21:23811675-23811814 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 477-800 |
| Cow position: | chr21:28529780-28529459 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 477-834 |
| Cow position: | chr21:2416010-2416354 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 477-851 |
| Cow position: | chr21:216075-216442 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 477-851 |
| Cow position: | chr21:358783-359151 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 60 |
| Conread position: | 477-851 |
| Cow position: | chr21:21031502-21031869 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 85, 105 |
| Conread position: | 477-852 |
| Cow position: | chr21:2530364-2529991 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 123 |
| Conread position: | 477-852 |
| Cow position: | chr21:2674875-2674493 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 292 |
| Conread position: | 477-852 |
| Cow position: | chr21:2716907-2716547 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 87 |
| Conread position: | 477-852 |
| Cow position: | chr21:4076609-4076975 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 95 |
| Conread position: | 477-852 |
| Cow position: | chr21:11453891-11453520 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 477-852 |
| Cow position: | chr21:11505349-11505723 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 104 |
| Conread position: | 477-852 |
| Cow position: | chr21:12056235-12055865 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 477-852 |
| Cow position: | chr21:13124234-13123867 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 46 |
| Conread position: | 477-852 |
| Cow position: | chr21:26638694-26638329 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 84 |
| Conread position: | 477-852 |
| Cow position: | chr21:26819251-26818885 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 98 |
| Conread position: | 477-852 |
| Cow position: | chr21:27708524-27708898 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-852 |
| Cow position: | chr21:35596143-35596504 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 477-852 |
| Cow position: | chr21:46915354-46915724 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 84 |
| Conread position: | 477-860 |
| Cow position: | chr21:4222933-4222544 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 67 |
| Conread position: | 478-802 |
| Cow position: | chr21:2501700-2502015 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 36, 197 |
| Conread position: | 478-849 |
| Cow position: | chr21:23860546-23860914 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 102 |
| Conread position: | 478-852 |
| Cow position: | chr21:4183306-4183660 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 480-852 |
| Cow position: | chr21:3615060-3615428 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 480-852 |
| Cow position: | chr21:47939244-47939612 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 216 |
| Conread position: | 484-850 |
| Cow position: | chr21:20744967-20744625 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 213, 56 |
| Conread position: | 487-852 |
| Cow position: | chr21:3426258-3426621 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 488-852 |
| Cow position: | chr21:2789208-2788855 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 489-832 |
| Cow position: | chr21:39424844-39425180 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 72 |
| Conread position: | 489-852 |
| Cow position: | chr21:4090424-4090785 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 289 |
| Conread position: | 494-848 |
| Cow position: | chr21:17572705-17573053 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 494-849 |
| Cow position: | chr21:2476732-2476374 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 83 |
| Conread position: | 494-852 |
| Cow position: | chr21:37044697-37045049 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 497-852 |
| Cow position: | chr21:2510439-2510787 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 498-851 |
| Cow position: | chr21:21516993-21517331 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 65, 73 |
| Conread position: | 500-851 |
| Cow position: | chr21:21948016-21947667 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 501-852 |
| Cow position: | chr21:30561588-30561938 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 0 |
| Conread position: | 517-849 |
| Cow position: | chr21:33755096-33755437 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 518-852 |
| Cow position: | chr21:3949903-3950226 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 104, 81 |
| Conread position: | 581-850 |
| Cow position: | chr21:2541550-2541279 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 253 |
| Conread position: | 583-823 |
| Cow position: | chr21:27625-27851 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 601-851 |
| Cow position: | chr21:4456716-4456961 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 671-852 |
| Cow position: | chr21:23811832-23812012 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 675-843 |
| Cow position: | chr21:4590030-4589864 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 700-852 |
| Cow position: | chr21:27282372-27282523 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 708-852 |
| Cow position: | chr21:6339559-6339702 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 708-852 |
| Cow position: | chr21:8678367-8678224 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 127, 0 |
Show alignments to all cow chromosomes.