Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 221-402
Cow position: chr22:17072956-17073136 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 46

Conread position: 221-428
Cow position: chr22:8880344-8880547 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 236-485
Cow position: chr22:1320728-1320980 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 196, 47

Conread position: 453-849
Cow position: chr22:118251-117852 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 235

Conread position: 466-725
Cow position: chr22:36534387-36534126 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 467-852
Cow position: chr22:36861951-36861567 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 0

Conread position: 475-692
Cow position: chr22:42771134-42771352 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 5, 0

Conread position: 475-849
Cow position: chr22:1270918-1270550 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 69

Conread position: 475-849
Cow position: chr22:1285343-1284971 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 222, 9

Conread position: 475-851
Cow position: chr22:7277106-7277488 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 475-852
Cow position: chr22:36736362-36736726 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 475-852
Cow position: chr22:39469930-39469556 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 475-864
Cow position: chr22:10077160-10076780 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 35

Conread position: 476-770
Cow position: chr22:44456900-44457198 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 246

Conread position: 476-771
Cow position: chr22:46585723-46585428 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 476-804
Cow position: chr22:42747115-42747431 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 218
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 14

Conread position: 476-815
Cow position: chr22:44395371-44395708 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 476-841
Cow position: chr22:21588921-21589280 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 0

Conread position: 476-849
Cow position: chr22:1293902-1293536 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 55

Conread position: 476-849
Cow position: chr22:35672767-35672395 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 100

Conread position: 476-851
Cow position: chr22:309312-309676 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 253
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 260, 64

Conread position: 476-852
Cow position: chr22:327560-327196 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 199

Conread position: 476-852
Cow position: chr22:561110-560742 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 18

Conread position: 476-852
Cow position: chr22:6984843-6985218 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 100

Conread position: 476-852
Cow position: chr22:17329148-17328776 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 476-852
Cow position: chr22:19144109-19143736 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 0

Conread position: 476-852
Cow position: chr22:31312933-31313304 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr22:31335444-31335070 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 476-852
Cow position: chr22:34167920-34168295 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr22:42990760-42991135 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr22:44933568-44933943 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 216

Conread position: 477-727
Cow position: chr22:41420095-41419849 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 181
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 108, 193

Conread position: 477-771
Cow position: chr22:13772385-13772664 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 75, 0

Conread position: 477-771
Cow position: chr22:37067319-37067031 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 112, 56

Conread position: 477-811
Cow position: chr22:6504064-6503741 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 27

Conread position: 477-849
Cow position: chr22:3278760-3278394 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 84

Conread position: 477-849
Cow position: chr22:5307707-5308063 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 477-851
Cow position: chr22:693229-693594 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 108

Conread position: 477-851
Cow position: chr22:1318984-1319359 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 285

Conread position: 477-851
Cow position: chr22:15850935-15851298 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 54

Conread position: 477-851
Cow position: chr22:18816792-18816417 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 149

Conread position: 477-851
Cow position: chr22:32348375-32348016 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 247
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 330, 63

Conread position: 477-852
Cow position: chr22:302394-302027 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 249
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 34, 104

Conread position: 477-852
Cow position: chr22:1321213-1321575 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 477-852
Cow position: chr22:5233707-5233342 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 84

Conread position: 477-852
Cow position: chr22:5672328-5672700 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 477-852
Cow position: chr22:10546240-10546608 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr22:27310187-27309810 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 361

Conread position: 477-852
Cow position: chr22:37131240-37131611 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 98

Conread position: 477-852
Cow position: chr22:39882583-39882213 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 477-852
Cow position: chr22:44353358-44352993 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 0

Conread position: 477-852
Cow position: chr22:44609208-44609563 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 248
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 34, 50

Conread position: 477-852
Cow position: chr22:46636106-46635743 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 74

Conread position: 477-852
Cow position: chr22:46852932-46853305 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 98

Conread position: 483-852
Cow position: chr22:158319-157939 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 368

Conread position: 487-678
Cow position: chr22:526309-526119 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 112, 0

Conread position: 487-833
Cow position: chr22:35943793-35943454 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 220
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 76, 44

Conread position: 497-818
Cow position: chr22:18476151-18475836 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 83

Conread position: 497-833
Cow position: chr22:44489496-44489832 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 154

Conread position: 497-841
Cow position: chr22:16200104-16200439 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 79

Conread position: 497-844
Cow position: chr22:10910242-10909882 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 79

Conread position: 497-851
Cow position: chr22:33350776-33351131 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 239
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 80, 106

Conread position: 497-852
Cow position: chr22:24949439-24949793 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 195

Conread position: 497-852
Cow position: chr22:32485718-32485389 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 497-852
Cow position: chr22:37265061-37265417 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 187

Conread position: 497-852
Cow position: chr22:44370004-44369656 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 64

Conread position: 498-851
Cow position: chr22:293542-293195 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 233
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 67, 29

Conread position: 501-852
Cow position: chr22:8136578-8136238 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 29

Conread position: 504-852
Cow position: chr22:3307102-3306770 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 508-851
Cow position: chr22:9657944-9658284 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 22, 60

Conread position: 508-852
Cow position: chr22:15957068-15956732 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 227
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 59, 37

Conread position: 516-796
Cow position: chr22:4065269-4065549 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 60

Conread position: 519-833
Cow position: chr22:1878425-1878737 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 71

Conread position: 521-852
Cow position: chr22:5933348-5933021 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 30

Conread position: 541-849
Cow position: chr22:37073515-37073230 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 13, 126

Conread position: 543-851
Cow position: chr22:36267032-36267332 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 207
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 97, 132

Conread position: 576-851
Cow position: chr22:34598366-34598632 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 203
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 89, 58

Conread position: 595-852
Cow position: chr22:11030666-11030923 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 189
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 9, 99

Conread position: 613-848
Cow position: chr22:36183484-36183718 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 75, 32

Conread position: 620-852
Cow position: chr22:27283781-27284007 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 175
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 77, 72

Conread position: 621-852
Cow position: chr22:27386698-27386468 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 216, 0

Conread position: 657-852
Cow position: chr22:536870-537064 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 182, 0

Conread position: 659-851
Cow position: chr22:13917278-13917465 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 145
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 17, 0

Conread position: 667-811
Cow position: chr22:12732065-12731921 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 667-852
Cow position: chr22:15314169-15313987 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 129
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 683-849
Cow position: chr22:525881-525720 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 103, 68

Conread position: 718-852
Cow position: chr22:46547834-46547701 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 121, 0

Show alignments to all cow chromosomes.