Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 411-852 |
| Cow position: | chr24:35839015-35838576 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 8 |
| Conread position: | 416-855 |
| Cow position: | chr24:12131859-12131436 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 12 |
| Conread position: | 450-852 |
| Cow position: | chr24:14391073-14390682 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 288, 216 |
| Conread position: | 464-852 |
| Cow position: | chr24:13531872-13531487 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 210 |
| Conread position: | 474-753 |
| Cow position: | chr24:6057351-6057625 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 211, 93 |
| Conread position: | 474-852 |
| Cow position: | chr24:6145034-6145409 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 474-852 |
| Cow position: | chr24:15392624-15392260 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 475-802 |
| Cow position: | chr24:6351865-6352195 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 475-851 |
| Cow position: | chr24:17525118-17525490 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 10, 41 |
| Conread position: | 475-851 |
| Cow position: | chr24:32331019-32331373 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 114, 177 |
| Conread position: | 475-852 |
| Cow position: | chr24:12114357-12113991 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 475-852 |
| Cow position: | chr24:36560398-36560034 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 475-876 |
| Cow position: | chr24:1447253-1447634 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 372, 46 |
| Conread position: | 476-676 |
| Cow position: | chr24:29186480-29186680 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-720 |
| Cow position: | chr24:20267892-20268136 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 178 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 85, 95 |
| Conread position: | 476-848 |
| Cow position: | chr24:33933042-33933411 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 0 |
| Conread position: | 476-849 |
| Cow position: | chr24:12085874-12086245 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 197 |
| Conread position: | 476-851 |
| Cow position: | chr24:35841928-35841569 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 252 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 223, 56 |
| Conread position: | 476-852 |
| Cow position: | chr24:148917-148568 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 476-852 |
| Cow position: | chr24:6083691-6084066 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 476-852 |
| Cow position: | chr24:14384935-14384564 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 476-852 |
| Cow position: | chr24:19833058-19833430 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 476-869 |
| Cow position: | chr24:4415857-4415459 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 247 |
| Conread position: | 477-635 |
| Cow position: | chr24:14583774-14583930 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 477-720 |
| Cow position: | chr24:37216402-37216651 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 477-726 |
| Cow position: | chr24:35990976-35990737 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 477-752 |
| Cow position: | chr24:32125819-32125562 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 192, 66 |
| Conread position: | 477-804 |
| Cow position: | chr24:23098756-23098434 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 237, 86 |
| Conread position: | 477-810 |
| Cow position: | chr24:39678120-39678437 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 248, 72 |
| Conread position: | 477-823 |
| Cow position: | chr24:13318913-13319255 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 122 |
| Conread position: | 477-838 |
| Cow position: | chr24:13021347-13021704 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-848 |
| Cow position: | chr24:6335373-6335741 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 45 |
| Conread position: | 477-850 |
| Cow position: | chr24:12798075-12797718 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 477-851 |
| Cow position: | chr24:36707536-36707900 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 477-852 |
| Cow position: | chr24:6645093-6645462 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 197 |
| Conread position: | 477-852 |
| Cow position: | chr24:9189055-9188682 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 98 |
| Conread position: | 477-852 |
| Cow position: | chr24:12236737-12237103 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 477-852 |
| Cow position: | chr24:12485642-12485268 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 95 |
| Conread position: | 477-852 |
| Cow position: | chr24:17187221-17187590 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 0 |
| Conread position: | 477-852 |
| Cow position: | chr24:22792852-22793222 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-852 |
| Cow position: | chr24:44017221-44017595 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-855 |
| Cow position: | chr24:33739667-33739292 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 153 |
| Conread position: | 477-876 |
| Cow position: | chr24:16649619-16649227 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 129 |
| Conread position: | 478-835 |
| Cow position: | chr24:13181660-13181317 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 478-851 |
| Cow position: | chr24:38635424-38635803 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 228, 102 |
| Conread position: | 479-636 |
| Cow position: | chr24:17314636-17314479 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 479-832 |
| Cow position: | chr24:36296852-36297190 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 86, 93 |
| Conread position: | 479-851 |
| Cow position: | chr24:12289041-12288681 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 480-724 |
| Cow position: | chr24:37301395-37301159 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 157, 81 |
| Conread position: | 487-710 |
| Cow position: | chr24:5993285-5993069 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 42, 77 |
| Conread position: | 487-852 |
| Cow position: | chr24:6433923-6434290 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 208 |
| Conread position: | 490-852 |
| Cow position: | chr24:12161567-12161928 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 165 |
| Conread position: | 497-833 |
| Cow position: | chr24:16084982-16084629 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 497-852 |
| Cow position: | chr24:6025401-6025046 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 339 |
| Conread position: | 497-852 |
| Cow position: | chr24:7060802-7061149 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 497-852 |
| Cow position: | chr24:13187890-13188234 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 498-850 |
| Cow position: | chr24:14873646-14873300 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 73 |
| Conread position: | 502-756 |
| Cow position: | chr24:12207842-12208092 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 77, 102 |
| Conread position: | 526-852 |
| Cow position: | chr24:12224754-12224420 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 235 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 531-852 |
| Cow position: | chr24:2635849-2636169 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 45 |
| Conread position: | 540-852 |
| Cow position: | chr24:8029889-8030200 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 42 |
| Conread position: | 634-852 |
| Cow position: | chr24:14584927-14585142 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 648-852 |
| Cow position: | chr24:22951982-22952185 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 656-849 |
| Cow position: | chr24:9092419-9092227 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 659-849 |
| Cow position: | chr24:40548731-40548924 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 20, 180 |
| Conread position: | 667-829 |
| Cow position: | chr24:12335927-12335766 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 717-852 |
| Cow position: | chr24:37216919-37217053 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 120, 0 |
Show alignments to all cow chromosomes.