Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 221-423 |
| Cow position: | chr25:18172455-18172655 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 161, 71 |
| Conread position: | 223-428 |
| Cow position: | chr25:18092039-18092240 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 453-852 |
| Cow position: | chr25:18028021-18027620 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 138 |
| Conread position: | 466-849 |
| Cow position: | chr25:18255736-18255362 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 111, 211 |
| Conread position: | 466-852 |
| Cow position: | chr25:14015797-14016172 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 201 |
| Conread position: | 476-649 |
| Cow position: | chr25:34014714-34014542 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 476-838 |
| Cow position: | chr25:22147127-22147487 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 476-848 |
| Cow position: | chr25:18060962-18060586 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 54 |
| Conread position: | 476-851 |
| Cow position: | chr25:26866854-26867227 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 344 |
| Conread position: | 476-852 |
| Cow position: | chr25:8674558-8674921 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 67 |
| Conread position: | 476-852 |
| Cow position: | chr25:13780667-13781035 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 0 |
| Conread position: | 476-852 |
| Cow position: | chr25:18890383-18890009 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 476-852 |
| Cow position: | chr25:20629208-20629583 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr25:25506281-25506656 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 222 |
| Conread position: | 476-852 |
| Cow position: | chr25:26278908-26279271 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 476-852 |
| Cow position: | chr25:26921862-26922235 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 120 |
| Conread position: | 476-852 |
| Cow position: | chr25:34347360-34346986 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 477-798 |
| Cow position: | chr25:33243506-33243809 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 196, 20 |
| Conread position: | 477-807 |
| Cow position: | chr25:18421282-18421608 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 193, 75 |
| Conread position: | 477-810 |
| Cow position: | chr25:17563271-17562956 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 24 |
| Conread position: | 477-832 |
| Cow position: | chr25:24171667-24172014 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-841 |
| Cow position: | chr25:18092655-18093013 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 477-844 |
| Cow position: | chr25:17560962-17560614 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 24 |
| Conread position: | 477-849 |
| Cow position: | chr25:35362787-35362420 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 477-851 |
| Cow position: | chr25:19288712-19288350 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 123 |
| Conread position: | 477-852 |
| Cow position: | chr25:11375714-11375342 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 0 |
| Conread position: | 477-852 |
| Cow position: | chr25:18302406-18302796 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 75 |
| Conread position: | 477-852 |
| Cow position: | chr25:18411649-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 84 |
| Conread position: | 477-860 |
| Cow position: | chr25:17469061-17468683 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 123 |
| Conread position: | 477-861 |
| Cow position: | chr25:11933887-11933512 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 484-852 |
| Cow position: | chr25:34656805-34656439 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 489-705 |
| Cow position: | chr25:12943793-12943578 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 497-852 |
| Cow position: | chr25:19916741-19917089 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 497-852 |
| Cow position: | chr25:20777246-20776893 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 99 |
| Conread position: | 497-852 |
| Cow position: | chr25:32579635-32579971 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 498-848 |
| Cow position: | chr25:17589890-17589547 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 100 |
| Conread position: | 505-834 |
| Cow position: | chr25:18276163-18275835 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 521-814 |
| Cow position: | chr25:24169145-24169436 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 538-852 |
| Cow position: | chr25:33991364-33991053 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 7 |
| Conread position: | 581-851 |
| Cow position: | chr25:36240282-36240551 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 98 |
| Conread position: | 656-852 |
| Cow position: | chr25:18173171-18173368 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 18, 185 |
| Conread position: | 698-852 |
| Cow position: | chr25:12942847-12942695 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.