Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
| Conread position: | 212-428 |
| Cow position: | chr28:26006594-26006808 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 221-464 |
| Cow position: | chr28:10619964-10619722 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 210, 156 |
| Conread position: | 221-481 |
| Cow position: | chr28:21358155-21358417 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 39 |
| Conread position: | 223-428 |
| Cow position: | chr28:2990824-2990624 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 223-430 |
| Cow position: | chr28:5811847-5812052 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 32, 43 |
| Conread position: | 411-625 |
| Cow position: | chr28:9137459-9137246 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 8 |
| Conread position: | 466-838 |
| Cow position: | chr28:1952764-1953125 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 106 |
| Conread position: | 466-852 |
| Cow position: | chr28:7900982-7901362 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 121 |
| Conread position: | 474-851 |
| Cow position: | chr28:10619465-10619103 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 103 |
| Conread position: | 476-619 |
| Cow position: | chr28:1504274-1504417 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-620 |
| Cow position: | chr28:15035783-15035639 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-625 |
| Cow position: | chr28:5752527-5752378 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-625 |
| Cow position: | chr28:7739887-7740037 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 476-628 |
| Cow position: | chr28:33251977-33252129 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-769 |
| Cow position: | chr28:13522360-13522653 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 476-836 |
| Cow position: | chr28:1168531-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 476-836 |
| Cow position: | chr28:34593476-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 0 |
| Conread position: | 476-841 |
| Cow position: | chr28:2083237-2083600 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 216 |
| Conread position: | 476-842 |
| Cow position: | chr28:5565494-5565867 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 476-848 |
| Cow position: | chr28:14706038-14705668 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 476-849 |
| Cow position: | chr28:17388114-17388486 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-849 |
| Cow position: | chr28:18520828-18520456 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 0 |
| Conread position: | 476-849 |
| Cow position: | chr28:26426633-26426269 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 28 |
| Conread position: | 476-852 |
| Cow position: | chr28:782031-782403 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:3193142-3192783 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:8378199-8378572 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 199 |
| Conread position: | 476-852 |
| Cow position: | chr28:10582352-10581978 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:13459607-13459977 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:17667879-17667506 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:22261518-22261143 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:29819203-29819576 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 0 |
| Conread position: | 476-852 |
| Cow position: | chr28:32792746-32792372 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 292 |
| Conread position: | 476-861 |
| Cow position: | chr28:12149955-12150326 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 0 |
| Conread position: | 477-607 |
| Cow position: | chr28:24667248-24667378 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 477-639 |
| Cow position: | chr28:489124-489286 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-784 |
| Cow position: | chr28:21325428-21325730 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 46 |
| Conread position: | 477-791 |
| Cow position: | chr28:3774203-3773889 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 477-807 |
| Cow position: | chr28:5796460-5796779 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 477-841 |
| Cow position: | chr28:15585031-15585389 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 112, 126 |
| Conread position: | 477-842 |
| Cow position: | chr28:32331764-32331408 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 477-851 |
| Cow position: | chr28:17330898-17330519 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 185 |
| Conread position: | 477-851 |
| Cow position: | chr28:22827698-22828057 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 477-852 |
| Cow position: | chr28:1387756-1387387 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 477-852 |
| Cow position: | chr28:2591557-2591922 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 34 |
| Conread position: | 477-852 |
| Cow position: | chr28:5812342-5812715 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 202 |
| Conread position: | 477-852 |
| Cow position: | chr28:8721810-8721441 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 199 |
| Conread position: | 477-852 |
| Cow position: | chr28:9155645-9155272 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 33 |
| Conread position: | 477-852 |
| Cow position: | chr28:9953769-9954144 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 279 |
| Conread position: | 477-852 |
| Cow position: | chr28:13441243-13440869 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 99 |
| Conread position: | 477-852 |
| Cow position: | chr28:14750182-14750555 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 94 |
| Conread position: | 477-852 |
| Cow position: | chr28:15950615-15950987 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 94 |
| Conread position: | 477-852 |
| Cow position: | chr28:21358655-21359016 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 480-873 |
| Cow position: | chr28:15681530-15681915 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 192 |
| Conread position: | 481-771 |
| Cow position: | chr28:4381196-4380892 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 68, 223 |
| Conread position: | 486-852 |
| Cow position: | chr28:1815224-1814860 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 487-717 |
| Cow position: | chr28:26007675-26007903 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 90, 164 |
| Conread position: | 487-828 |
| Cow position: | chr28:6780683-6780345 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 77, 95 |
| Conread position: | 497-852 |
| Cow position: | chr28:7821919-7822265 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 64 |
| Conread position: | 497-852 |
| Cow position: | chr28:15920805-15920458 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 501-681 |
| Cow position: | chr28:5115422-5115243 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 504-638 |
| Cow position: | chr28:7790575-7790444 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 505-852 |
| Cow position: | chr28:24587098-24587441 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 60 |
| Conread position: | 516-848 |
| Cow position: | chr28:7001661-7001992 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 0 |
| Conread position: | 518-749 |
| Cow position: | chr28:14491140-14491364 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 521-851 |
| Cow position: | chr28:7816912-7817228 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 220, 111 |
| Conread position: | 523-851 |
| Cow position: | chr28:34648615-34648950 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 70, 140 |
| Conread position: | 599-771 |
| Cow position: | chr28:2846738-2846571 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 75 |
| Conread position: | 604-852 |
| Cow position: | chr28:1504615-1504859 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 148 |
| Conread position: | 611-835 |
| Cow position: | chr28:5752109-5751884 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 614-852 |
| Cow position: | chr28:15378221-15377984 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 223, 0 |
| Conread position: | 615-874 |
| Cow position: | chr28:24652063-24652322 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 224 |
| Conread position: | 616-843 |
| Cow position: | chr28:2989909-2989689 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 640-851 |
| Cow position: | chr28:24667378-24667587 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 93, 63 |
| Conread position: | 645-797 |
| Cow position: | chr28:12648937-12648785 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 667-855 |
| Cow position: | chr28:5114976-5114789 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 668-852 |
| Cow position: | chr28:15035671-15035489 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 15, 19 |
Show alignments to all cow chromosomes.