Cow genome map
Conread name: | Ss1.1-Pig4-TMW8025D03.5 |
Conread position: | 221-436 |
Cow position: | chr29:103139-103350 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 150 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 208, 40 |
Conread position: | 238-428 |
Cow position: | chr29:45465236-45465051 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 133 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 446-852 |
Cow position: | chr29:2099414-2099818 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 106 |
Conread position: | 458-749 |
Cow position: | chr29:9644140-9643852 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 216 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 0 |
Conread position: | 467-852 |
Cow position: | chr29:16022134-16022503 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 80, 107 |
Conread position: | 474-691 |
Cow position: | chr29:14368544-14368760 (view UCSC Genome Browser custom track) |
Alignm length: | 219 |
Alignm identity: | 156 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 87, 107 |
Conread position: | 474-852 |
Cow position: | chr29:45459316-45459688 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 200, 0 |
Conread position: | 475-749 |
Cow position: | chr29:2468342-2468058 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 200 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 197, 0 |
Conread position: | 475-852 |
Cow position: | chr29:611016-610639 (view UCSC Genome Browser custom track) |
Alignm length: | 382 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 111 |
Conread position: | 475-852 |
Cow position: | chr29:7840398-7840770 (view UCSC Genome Browser custom track) |
Alignm length: | 379 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 89, 11 |
Conread position: | 476-703 |
Cow position: | chr29:45587699-45587472 (view UCSC Genome Browser custom track) |
Alignm length: | 229 |
Alignm identity: | 172 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 221, 216 |
Conread position: | 476-811 |
Cow position: | chr29:38226594-38226936 (view UCSC Genome Browser custom track) |
Alignm length: | 345 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 216, 77 |
Conread position: | 476-838 |
Cow position: | chr29:48877-48516 (view UCSC Genome Browser custom track) |
Alignm length: | 364 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 337, 301 |
Conread position: | 476-838 |
Cow position: | chr29:40503380-40503018 (view UCSC Genome Browser custom track) |
Alignm length: | 363 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 476-841 |
Cow position: | chr29:32539410-32539774 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 0 |
Conread position: | 476-841 |
Cow position: | chr29:34800203-34799846 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 0 |
Conread position: | 476-848 |
Cow position: | chr29:2841766-2841398 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 0 |
Conread position: | 476-848 |
Cow position: | chr29:5957202-5957572 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 0 |
Conread position: | 476-848 |
Cow position: | chr29:21246167-21246540 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 221, 216 |
Conread position: | 476-849 |
Cow position: | chr29:1714859-1715218 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 243 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 349, 88 |
Conread position: | 476-852 |
Cow position: | chr29:6266893-6266520 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 0 |
Conread position: | 476-852 |
Cow position: | chr29:7431617-7431242 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 360, 0 |
Conread position: | 476-852 |
Cow position: | chr29:10648646-10648278 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 0 |
Conread position: | 476-852 |
Cow position: | chr29:10824357-10823982 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 49 |
Conread position: | 476-852 |
Cow position: | chr29:19623645-19623274 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 0 |
Conread position: | 476-852 |
Cow position: | chr29:19652707-19653078 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 327, 0 |
Conread position: | 476-852 |
Cow position: | chr29:20250758-20251133 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 0 |
Conread position: | 476-852 |
Cow position: | chr29:25932945-25932571 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 284, 0 |
Conread position: | 476-852 |
Cow position: | chr29:26165220-26164849 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 476-852 |
Cow position: | chr29:39080107-39079732 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 0 |
Conread position: | 476-852 |
Cow position: | chr29:43322158-43322533 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 361, 0 |
Conread position: | 477-660 |
Cow position: | chr29:34752086-34751910 (view UCSC Genome Browser custom track) |
Alignm length: | 184 |
Alignm identity: | 129 |
Alignm E-value: | 4e-22 |
Alignm gaps (pig, cow): | 98, 0 |
Conread position: | 477-793 |
Cow position: | chr29:10843893-10844197 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 184 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 86, 15 |
Conread position: | 477-799 |
Cow position: | chr29:2750782-2750472 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 227 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 477-823 |
Cow position: | chr29:14013072-14013417 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 236 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 87, 102 |
Conread position: | 477-823 |
Cow position: | chr29:14073341-14072994 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 236 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 73, 104 |
Conread position: | 477-849 |
Cow position: | chr29:27041160-27040792 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 267 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 198, 0 |
Conread position: | 477-851 |
Cow position: | chr29:104186-104545 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 109 |
Conread position: | 477-851 |
Cow position: | chr29:12796863-12796501 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 34 |
Conread position: | 477-851 |
Cow position: | chr29:15950576-15950209 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 262 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 285, 103 |
Conread position: | 477-851 |
Cow position: | chr29:30811151-30811504 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 477-851 |
Cow position: | chr29:35196287-35196645 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 184, 87 |
Conread position: | 477-852 |
Cow position: | chr29:11048882-11049254 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 199 |
Conread position: | 477-852 |
Cow position: | chr29:15969541-15969177 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 60 |
Conread position: | 477-852 |
Cow position: | chr29:16769736-16770102 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 477-852 |
Cow position: | chr29:21543772-21543391 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 186, 117 |
Conread position: | 477-852 |
Cow position: | chr29:23975433-23975813 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 108, 76 |
Conread position: | 477-852 |
Cow position: | chr29:27250733-27250361 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 99 |
Conread position: | 477-852 |
Cow position: | chr29:28061066-28060691 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 278 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 99 |
Conread position: | 477-852 |
Cow position: | chr29:31121408-31121779 (view UCSC Genome Browser custom track) |
Alignm length: | 378 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 55 |
Conread position: | 477-852 |
Cow position: | chr29:32640382-32640752 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 245 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 52, 80 |
Conread position: | 477-852 |
Cow position: | chr29:43366391-43366026 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 220, 31 |
Conread position: | 479-852 |
Cow position: | chr29:15895246-15894877 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 96 |
Conread position: | 488-852 |
Cow position: | chr29:2689517-2689875 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 257, 78 |
Conread position: | 489-852 |
Cow position: | chr29:16109340-16109701 (view UCSC Genome Browser custom track) |
Alignm length: | 366 |
Alignm identity: | 259 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 98, 204 |
Conread position: | 497-803 |
Cow position: | chr29:13578047-13578344 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 219, 64 |
Conread position: | 497-848 |
Cow position: | chr29:32315662-32316010 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 35 |
Conread position: | 499-852 |
Cow position: | chr29:32220347-32220695 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 217 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 120, 110 |
Conread position: | 516-852 |
Cow position: | chr29:10848479-10848135 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 118 |
Conread position: | 526-852 |
Cow position: | chr29:35296526-35296848 (view UCSC Genome Browser custom track) |
Alignm length: | 329 |
Alignm identity: | 239 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 120 |
Conread position: | 566-852 |
Cow position: | chr29:39313898-39313617 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 195 |
Alignm E-value: | 4e-31 |
Alignm gaps (pig, cow): | 192, 14 |
Conread position: | 573-852 |
Cow position: | chr29:31180821-31181097 (view UCSC Genome Browser custom track) |
Alignm length: | 281 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 17 |
Conread position: | 576-852 |
Cow position: | chr29:13853321-13853050 (view UCSC Genome Browser custom track) |
Alignm length: | 277 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 576-860 |
Cow position: | chr29:34609247-34608969 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 207 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 20, 75 |
Conread position: | 584-852 |
Cow position: | chr29:21427348-21427081 (view UCSC Genome Browser custom track) |
Alignm length: | 270 |
Alignm identity: | 209 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 114 |
Conread position: | 602-749 |
Cow position: | chr29:42650052-42650195 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 113 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 602-749 |
Cow position: | chr29:42801912-42802055 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 113 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 614-850 |
Cow position: | chr29:17662658-17662896 (view UCSC Genome Browser custom track) |
Alignm length: | 239 |
Alignm identity: | 177 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 674-852 |
Cow position: | chr29:27981123-27980944 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 130 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 38, 163 |
Conread position: | 696-852 |
Cow position: | chr29:19884888-19885043 (view UCSC Genome Browser custom track) |
Alignm length: | 157 |
Alignm identity: | 116 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 139, 0 |
Show alignments to all cow chromosomes.