Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 221-436
Cow position: chr29:103139-103350 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 208, 40

Conread position: 238-428
Cow position: chr29:45465236-45465051 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 446-852
Cow position: chr29:2099414-2099818 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 106

Conread position: 458-749
Cow position: chr29:9644140-9643852 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 0

Conread position: 467-852
Cow position: chr29:16022134-16022503 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 107

Conread position: 474-691
Cow position: chr29:14368544-14368760 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 87, 107

Conread position: 474-852
Cow position: chr29:45459316-45459688 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 475-749
Cow position: chr29:2468342-2468058 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 197, 0

Conread position: 475-852
Cow position: chr29:611016-610639 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 111

Conread position: 475-852
Cow position: chr29:7840398-7840770 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 11

Conread position: 476-703
Cow position: chr29:45587699-45587472 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 221, 216

Conread position: 476-811
Cow position: chr29:38226594-38226936 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 77

Conread position: 476-838
Cow position: chr29:48877-48516 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 301

Conread position: 476-838
Cow position: chr29:40503380-40503018 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 476-841
Cow position: chr29:32539410-32539774 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 476-841
Cow position: chr29:34800203-34799846 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 476-848
Cow position: chr29:2841766-2841398 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-848
Cow position: chr29:5957202-5957572 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 0

Conread position: 476-848
Cow position: chr29:21246167-21246540 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 216

Conread position: 476-849
Cow position: chr29:1714859-1715218 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 243
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 349, 88

Conread position: 476-852
Cow position: chr29:6266893-6266520 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 476-852
Cow position: chr29:7431617-7431242 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 0

Conread position: 476-852
Cow position: chr29:10648646-10648278 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr29:10824357-10823982 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 49

Conread position: 476-852
Cow position: chr29:19623645-19623274 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 476-852
Cow position: chr29:19652707-19653078 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 0

Conread position: 476-852
Cow position: chr29:20250758-20251133 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr29:25932945-25932571 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 284, 0

Conread position: 476-852
Cow position: chr29:26165220-26164849 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 476-852
Cow position: chr29:39080107-39079732 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr29:43322158-43322533 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 477-660
Cow position: chr29:34752086-34751910 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 98, 0

Conread position: 477-793
Cow position: chr29:10843893-10844197 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 86, 15

Conread position: 477-799
Cow position: chr29:2750782-2750472 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 227
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 0

Conread position: 477-823
Cow position: chr29:14013072-14013417 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 87, 102

Conread position: 477-823
Cow position: chr29:14073341-14072994 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 236
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 73, 104

Conread position: 477-849
Cow position: chr29:27041160-27040792 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 477-851
Cow position: chr29:104186-104545 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 109

Conread position: 477-851
Cow position: chr29:12796863-12796501 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 34

Conread position: 477-851
Cow position: chr29:15950576-15950209 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 103

Conread position: 477-851
Cow position: chr29:30811151-30811504 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 477-851
Cow position: chr29:35196287-35196645 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 87

Conread position: 477-852
Cow position: chr29:11048882-11049254 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 199

Conread position: 477-852
Cow position: chr29:15969541-15969177 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 60

Conread position: 477-852
Cow position: chr29:16769736-16770102 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 477-852
Cow position: chr29:21543772-21543391 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 117

Conread position: 477-852
Cow position: chr29:23975433-23975813 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 76

Conread position: 477-852
Cow position: chr29:27250733-27250361 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr29:28061066-28060691 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 99

Conread position: 477-852
Cow position: chr29:31121408-31121779 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 55

Conread position: 477-852
Cow position: chr29:32640382-32640752 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 245
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 80

Conread position: 477-852
Cow position: chr29:43366391-43366026 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 31

Conread position: 479-852
Cow position: chr29:15895246-15894877 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 96

Conread position: 488-852
Cow position: chr29:2689517-2689875 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 78

Conread position: 489-852
Cow position: chr29:16109340-16109701 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 204

Conread position: 497-803
Cow position: chr29:13578047-13578344 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 64

Conread position: 497-848
Cow position: chr29:32315662-32316010 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 499-852
Cow position: chr29:32220347-32220695 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 217
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 110

Conread position: 516-852
Cow position: chr29:10848479-10848135 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 118

Conread position: 526-852
Cow position: chr29:35296526-35296848 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 120

Conread position: 566-852
Cow position: chr29:39313898-39313617 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 195
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 192, 14

Conread position: 573-852
Cow position: chr29:31180821-31181097 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 17

Conread position: 576-852
Cow position: chr29:13853321-13853050 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 576-860
Cow position: chr29:34609247-34608969 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 207
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 75

Conread position: 584-852
Cow position: chr29:21427348-21427081 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 114

Conread position: 602-749
Cow position: chr29:42650052-42650195 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 602-749
Cow position: chr29:42801912-42802055 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 8, 0

Conread position: 614-850
Cow position: chr29:17662658-17662896 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 177
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 80, 0

Conread position: 674-852
Cow position: chr29:27981123-27980944 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 38, 163

Conread position: 696-852
Cow position: chr29:19884888-19885043 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 139, 0

Show alignments to all cow chromosomes.