Cow genome map

Conread name: Ss1.1-Pig4-TMW8025D03.5

Conread position: 224-417
Cow position: chr4:1465255-1465064 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 56, 68

Conread position: 466-852
Cow position: chr4:47718280-47717910 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 81

Conread position: 470-685
Cow position: chr4:33074067-33073855 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 474-851
Cow position: chr4:51044559-51044196 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 258
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 28, 54

Conread position: 476-669
Cow position: chr4:57978738-57978931 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 476-689
Cow position: chr4:41118448-41118662 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 159
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 130, 199

Conread position: 476-720
Cow position: chr4:46713011-46712776 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 181
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 67, 0

Conread position: 476-848
Cow position: chr4:41330761-41331133 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 362

Conread position: 476-848
Cow position: chr4:43880431-43880802 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 0

Conread position: 476-849
Cow position: chr4:6491025-6490655 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 0

Conread position: 476-849
Cow position: chr4:33493132-33493505 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 362

Conread position: 476-851
Cow position: chr4:4905476-4905847 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 45

Conread position: 476-851
Cow position: chr4:11383752-11384105 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 325, 62

Conread position: 476-852
Cow position: chr4:355236-355606 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 476-852
Cow position: chr4:1050299-1049923 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 476-852
Cow position: chr4:3960917-3961288 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 476-852
Cow position: chr4:12241899-12241523 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 362

Conread position: 476-852
Cow position: chr4:13491897-13492272 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 215

Conread position: 476-852
Cow position: chr4:17926933-17926559 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 219

Conread position: 476-852
Cow position: chr4:18516217-18516592 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr4:23114855-23114480 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 100

Conread position: 476-852
Cow position: chr4:29532393-29532018 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 0

Conread position: 476-852
Cow position: chr4:31668638-31669010 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 476-852
Cow position: chr4:36895695-36896070 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr4:43320315-43319940 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr4:44724404-44724779 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 476-852
Cow position: chr4:48025723-48026093 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 0

Conread position: 476-852
Cow position: chr4:65224213-65223838 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 100

Conread position: 476-853
Cow position: chr4:45049974-45049601 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 196

Conread position: 476-861
Cow position: chr4:24445878-24445497 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 161

Conread position: 477-669
Cow position: chr4:3358047-3358239 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 146
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 477-681
Cow position: chr4:11617760-11617971 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 117, 0

Conread position: 477-716
Cow position: chr4:49892921-49893155 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 164
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 88, 94

Conread position: 477-770
Cow position: chr4:9311559-9311852 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 477-833
Cow position: chr4:3125103-3125459 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 215

Conread position: 477-841
Cow position: chr4:16359215-16359569 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 477-850
Cow position: chr4:66925329-66925695 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 43

Conread position: 477-851
Cow position: chr4:21338657-21338297 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 477-851
Cow position: chr4:59517688-59517312 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 247
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 108, 16

Conread position: 477-852
Cow position: chr4:528315-528689 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 98

Conread position: 477-852
Cow position: chr4:602319-602690 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 197

Conread position: 477-852
Cow position: chr4:5879508-5879866 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 34

Conread position: 477-852
Cow position: chr4:47764848-47764474 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 105

Conread position: 477-870
Cow position: chr4:40824929-40824530 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 11, 100

Conread position: 477-873
Cow position: chr4:54190197-54190577 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 20

Conread position: 478-849
Cow position: chr4:28830364-28830734 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 66

Conread position: 478-852
Cow position: chr4:1464594-1464230 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 71

Conread position: 478-871
Cow position: chr4:8598808-8598435 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 266
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 164, 0

Conread position: 487-811
Cow position: chr4:34185515-34185211 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 33, 0

Conread position: 488-852
Cow position: chr4:46663539-46663889 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 494-816
Cow position: chr4:27442435-27442751 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 183, 66

Conread position: 494-852
Cow position: chr4:101590-101233 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 0

Conread position: 497-672
Cow position: chr4:41954137-41954311 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 78, 0

Conread position: 497-747
Cow position: chr4:60265445-60265194 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 153, 79

Conread position: 497-833
Cow position: chr4:157870-158193 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 497-833
Cow position: chr4:16055936-16056282 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 190

Conread position: 497-852
Cow position: chr4:1931278-1930927 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 195

Conread position: 497-852
Cow position: chr4:6269279-6268932 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 64

Conread position: 497-852
Cow position: chr4:13547370-13547724 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 74

Conread position: 498-851
Cow position: chr4:1497410-1497059 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 65, 73

Conread position: 504-808
Cow position: chr4:58883321-58883029 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 205
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 158, 19

Conread position: 506-811
Cow position: chr4:1371663-1371359 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 216
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 18, 52

Conread position: 517-852
Cow position: chr4:30308089-30307756 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 48

Conread position: 518-848
Cow position: chr4:11393965-11393644 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 295, 49

Conread position: 533-852
Cow position: chr4:32211544-32211863 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 160

Conread position: 557-852
Cow position: chr4:18425119-18424824 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 121

Conread position: 581-875
Cow position: chr4:10408204-10408498 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 261

Conread position: 586-852
Cow position: chr4:66179554-66179292 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 616-852
Cow position: chr4:12608040-12607809 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 16

Conread position: 627-852
Cow position: chr4:27332926-27333140 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 162, 47

Conread position: 630-823
Cow position: chr4:33630524-33630716 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 135
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 55, 148

Conread position: 643-845
Cow position: chr4:26887355-26887155 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 57, 51

Conread position: 657-851
Cow position: chr4:969537-969343 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 80

Conread position: 667-849
Cow position: chr4:57979143-57979324 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 170, 0

Conread position: 667-852
Cow position: chr4:11618374-11618553 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 33, 14

Conread position: 668-844
Cow position: chr4:33073584-33073408 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.