Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-212 |
| Cow position: | chr1:38387422-38387219 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 48, 90 |
| Conread position: | 1-327 |
| Cow position: | chr1:94253204-94253546 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 1-402 |
| Cow position: | chr1:24651041-24651440 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 110 |
| Conread position: | 1-518 |
| Cow position: | chr1:21720174-21720693 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 58 |
| Conread position: | 1-560 |
| Cow position: | chr1:40513095-40512520 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 41-564 |
| Cow position: | chr1:67286831-67287350 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 75-543 |
| Cow position: | chr1:73011135-73011614 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 317 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 84-487 |
| Cow position: | chr1:77656137-77656537 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 84-559 |
| Cow position: | chr1:30058975-30059440 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 320 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 84-564 |
| Cow position: | chr1:31418506-31417989 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 435 |
| Conread position: | 98-553 |
| Cow position: | chr1:78361210-78361662 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 306 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 117-529 |
| Cow position: | chr1:29033186-29033611 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 53 |
| Conread position: | 128-394 |
| Cow position: | chr1:34690099-34690375 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 228 |
| Conread position: | 203-507 |
| Cow position: | chr1:79110324-79110623 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 208-555 |
| Cow position: | chr1:55321970-55321627 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 13 |
| Conread position: | 216-434 |
| Cow position: | chr1:29413964-29413749 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 216-558 |
| Cow position: | chr1:22344112-22344435 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 217-503 |
| Cow position: | chr1:67328085-67327797 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 139 |
| Conread position: | 224-494 |
| Cow position: | chr1:91445465-91445734 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 224-564 |
| Cow position: | chr1:88270025-88269683 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 225-564 |
| Cow position: | chr1:63502040-63502382 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 226-560 |
| Cow position: | chr1:99675541-99675212 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 231-488 |
| Cow position: | chr1:38387151-38386900 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 232-446 |
| Cow position: | chr1:58179502-58179293 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 232-560 |
| Cow position: | chr1:33389317-33389654 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 222 |
| Conread position: | 237-492 |
| Cow position: | chr1:72137198-72137459 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 237-527 |
| Cow position: | chr1:44101165-44100873 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 14, 50 |
| Conread position: | 238-554 |
| Cow position: | chr1:98864531-98864214 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 90, 42 |
| Conread position: | 242-564 |
| Cow position: | chr1:29609458-29609141 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 105, 49 |
| Conread position: | 243-535 |
| Cow position: | chr1:80665053-80665356 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 36, 90 |
| Conread position: | 243-560 |
| Cow position: | chr1:57662202-57662513 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 241, 37 |
| Conread position: | 243-564 |
| Cow position: | chr1:15026561-15026882 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 88 |
| Conread position: | 244-506 |
| Cow position: | chr1:71449413-71449672 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 11 |
| Conread position: | 249-555 |
| Cow position: | chr1:18013293-18012981 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 257-559 |
| Cow position: | chr1:67834927-67834623 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 258-492 |
| Cow position: | chr1:86610068-86610289 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 274-564 |
| Cow position: | chr1:72186642-72186353 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 276-448 |
| Cow position: | chr1:59934393-59934566 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 276-560 |
| Cow position: | chr1:31421326-31421056 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 277-555 |
| Cow position: | chr1:30518938-30519206 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 280-527 |
| Cow position: | chr1:102812111-102812374 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 288-564 |
| Cow position: | chr1:22842900-22843169 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 297-509 |
| Cow position: | chr1:45019611-45019406 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 299-564 |
| Cow position: | chr1:23052056-23052317 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 317-527 |
| Cow position: | chr1:13572331-13572542 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 331-564 |
| Cow position: | chr1:63605482-63605250 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 22 |
| Conread position: | 335-564 |
| Cow position: | chr1:31811374-31811600 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 134 |
| Conread position: | 335-564 |
| Cow position: | chr1:56144037-56143809 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 336-476 |
| Cow position: | chr1:57568254-57568394 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-501 |
| Cow position: | chr1:1461030-1460868 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 336-556 |
| Cow position: | chr1:30534722-30534503 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr1:65386630-65386851 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 336-560 |
| Cow position: | chr1:69922136-69921913 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 336-560 |
| Cow position: | chr1:73070754-73070531 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr1:93854823-93855044 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:33551226-33551453 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:42736754-42736980 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:52358975-52358749 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:58336137-58336364 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr1:62244345-62244117 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:69403282-69403509 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:76545236-76545014 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 336-564 |
| Cow position: | chr1:79456670-79456444 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:82923877-82923651 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 336-564 |
| Cow position: | chr1:85780478-85780251 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 336-564 |
| Cow position: | chr1:88131073-88131300 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:91892821-91892593 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:94659984-94660201 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr1:99913719-99913946 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 337-564 |
| Cow position: | chr1:12061910-12061688 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 337-564 |
| Cow position: | chr1:57366829-57366599 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 337-564 |
| Cow position: | chr1:76752350-76752124 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 340-500 |
| Cow position: | chr1:56193627-56193467 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-563 |
| Cow position: | chr1:3385716-3385494 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr1:25179726-25179504 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr1:49973886-49973662 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr1:58883763-58883539 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 340-564 |
| Cow position: | chr1:72981571-72981796 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 340-564 |
| Cow position: | chr1:102434735-102434510 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 341-512 |
| Cow position: | chr1:79636629-79636462 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 15, 51 |
| Conread position: | 345-487 |
| Cow position: | chr1:69537209-69537350 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 345-560 |
| Cow position: | chr1:31330090-31329869 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 24, 33 |
| Conread position: | 345-564 |
| Cow position: | chr1:21999645-21999428 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 345-564 |
| Cow position: | chr1:28873386-28873603 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 345-564 |
| Cow position: | chr1:33712376-33712594 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 345-564 |
| Cow position: | chr1:85882314-85882521 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-490 |
| Cow position: | chr1:62853541-62853399 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 346-510 |
| Cow position: | chr1:33896005-33896165 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 109 |
| Conread position: | 346-557 |
| Cow position: | chr1:17036253-17036043 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 121 |
| Conread position: | 346-557 |
| Cow position: | chr1:33851581-33851801 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-557 |
| Cow position: | chr1:40574517-40574729 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-557 |
| Cow position: | chr1:69766766-69766978 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-557 |
| Cow position: | chr1:85791990-85792198 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 137 |
| Conread position: | 346-558 |
| Cow position: | chr1:40684387-40684180 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 346-559 |
| Cow position: | chr1:11291802-11291588 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:13450510-13450722 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 346-559 |
| Cow position: | chr1:17012435-17012221 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:18880089-18879875 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:20829193-20829407 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:21087717-21087931 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:28711220-28711434 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:29362600-29362815 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:30283239-30283026 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 200 |
| Conread position: | 346-559 |
| Cow position: | chr1:31396994-31397208 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:39544073-39544288 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:40053659-40053872 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 147 |
| Conread position: | 346-559 |
| Cow position: | chr1:53198853-53199067 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:56490154-56490368 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:57424535-57424322 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 11, 68 |
| Conread position: | 346-559 |
| Cow position: | chr1:60339609-60339820 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 140 |
| Conread position: | 346-559 |
| Cow position: | chr1:71562270-71562055 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:82564807-82565021 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:82652957-82653183 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 174 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:82912840-82912626 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:89425877-89426091 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:91899300-91899514 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr1:95239673-95239887 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-560 |
| Cow position: | chr1:86547831-86547620 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 117 |
| Conread position: | 346-562 |
| Cow position: | chr1:9382244-9382030 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 11, 60 |
| Conread position: | 346-563 |
| Cow position: | chr1:29034605-29034818 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 57 |
| Conread position: | 346-563 |
| Cow position: | chr1:56723458-56723677 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 11, 208 |
| Conread position: | 346-564 |
| Cow position: | chr1:8554632-8554850 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 88 |
| Conread position: | 347-559 |
| Cow position: | chr1:5355431-5355644 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 348-559 |
| Cow position: | chr1:80358875-80358663 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 349-488 |
| Cow position: | chr1:28723187-28723328 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 349-564 |
| Cow position: | chr1:48246159-48246360 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 350-563 |
| Cow position: | chr1:89770351-89770135 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 351-547 |
| Cow position: | chr1:17941472-17941276 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 351-560 |
| Cow position: | chr1:72081094-72081302 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 33 |
| Conread position: | 351-563 |
| Cow position: | chr1:102549550-102549764 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 168 |
| Conread position: | 351-564 |
| Cow position: | chr1:8825365-8825578 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 111 |
| Conread position: | 353-556 |
| Cow position: | chr1:31365771-31365566 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 355-564 |
| Cow position: | chr1:86698897-86698689 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 356-473 |
| Cow position: | chr1:18405876-18405758 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 356-477 |
| Cow position: | chr1:59674771-59674893 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-480 |
| Cow position: | chr1:87207107-87206982 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-486 |
| Cow position: | chr1:40954214-40954345 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-487 |
| Cow position: | chr1:97124129-97124260 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 356-564 |
| Cow position: | chr1:97226390-97226182 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-487 |
| Cow position: | chr1:89899382-89899256 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 364-564 |
| Cow position: | chr1:31403172-31402965 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 366-554 |
| Cow position: | chr1:61309339-61309524 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 366-564 |
| Cow position: | chr1:34692557-34692748 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 367-482 |
| Cow position: | chr1:45098028-45098143 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 368-563 |
| Cow position: | chr1:18027437-18027235 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 373-559 |
| Cow position: | chr1:43571069-43570886 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 373-564 |
| Cow position: | chr1:68607209-68607015 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 38, 137 |
| Conread position: | 378-529 |
| Cow position: | chr1:66999363-66999516 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 379-563 |
| Cow position: | chr1:82366523-82366706 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 391-559 |
| Cow position: | chr1:59209801-59209633 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-563 |
| Cow position: | chr1:57657167-57657325 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 401-564 |
| Cow position: | chr1:24651644-24651808 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 136 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 404-559 |
| Cow position: | chr1:56163913-56164067 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 404-564 |
| Cow position: | chr1:26518518-26518360 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 408-512 |
| Cow position: | chr1:76622534-76622430 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-564 |
| Cow position: | chr1:5502338-5502494 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 134 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-559 |
| Cow position: | chr1:28278340-28278490 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 74, 136 |
| Conread position: | 413-559 |
| Cow position: | chr1:91751091-91750945 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-545 |
| Cow position: | chr1:18242954-18242829 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 420-564 |
| Cow position: | chr1:25550344-25550488 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-560 |
| Cow position: | chr1:11860852-11860716 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 436-564 |
| Cow position: | chr1:40308670-40308798 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 458-564 |
| Cow position: | chr1:55777002-55777107 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.