Cow genome map

Conread name: Ss1.1-Pig4-TMW8026J10.5

Conread position: 1-213
Cow position: chr10:8339204-8339419 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 48, 33

Conread position: 1-413
Cow position: chr10:42628932-42629356 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 152

Conread position: 1-564
Cow position: chr10:31524107-31524652 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 124

Conread position: 2-293
Cow position: chr10:54979162-54978883 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 29, 9

Conread position: 2-558
Cow position: chr10:38545916-38545368 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 68

Conread position: 74-559
Cow position: chr10:28116036-28115557 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 304
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 17, 28

Conread position: 114-562
Cow position: chr10:15860798-15860369 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 12

Conread position: 117-487
Cow position: chr10:4717044-4717404 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 247
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 56, 24

Conread position: 128-564
Cow position: chr10:28931288-28930839 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 35

Conread position: 129-564
Cow position: chr10:32064684-32065142 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 308
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 50, 25

Conread position: 130-543
Cow position: chr10:54965989-54965590 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 282
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 37, 12

Conread position: 134-467
Cow position: chr10:46191830-46192155 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 233
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 64, 29

Conread position: 177-387
Cow position: chr10:13364350-13364137 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 26

Conread position: 177-387
Cow position: chr10:13365540-13365327 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 164
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 26

Conread position: 178-559
Cow position: chr10:14861413-14861804 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 203

Conread position: 211-564
Cow position: chr10:16476435-16476789 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 240
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 66, 19

Conread position: 216-559
Cow position: chr10:3543022-3542680 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 118

Conread position: 216-564
Cow position: chr10:38847919-38848263 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 15

Conread position: 221-543
Cow position: chr10:31537857-31538195 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 62, 110

Conread position: 224-555
Cow position: chr10:41388895-41388569 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 229
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 24, 48

Conread position: 224-559
Cow position: chr10:50312534-50312885 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 228
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 224

Conread position: 224-560
Cow position: chr10:21900569-21900237 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 19

Conread position: 227-564
Cow position: chr10:26596819-26597163 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 104

Conread position: 234-559
Cow position: chr10:64302541-64302221 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 217
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 40, 53

Conread position: 238-494
Cow position: chr10:6260180-6259933 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 178
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 42, 100

Conread position: 241-464
Cow position: chr10:58596658-58596881 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 88

Conread position: 244-496
Cow position: chr10:20370987-20370750 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 34, 68

Conread position: 247-492
Cow position: chr10:42110573-42110812 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 182
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 21, 34

Conread position: 247-505
Cow position: chr10:42749007-42749266 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 10, 34

Conread position: 249-563
Cow position: chr10:41775002-41774686 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 228
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 31, 62

Conread position: 255-559
Cow position: chr10:41877152-41877460 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 68

Conread position: 255-564
Cow position: chr10:8327037-8326744 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 229
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 229, 25

Conread position: 263-560
Cow position: chr10:11821009-11821314 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 22, 100

Conread position: 273-564
Cow position: chr10:24977513-24977214 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 214
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 8, 235

Conread position: 282-564
Cow position: chr10:21077166-21077444 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 74, 54

Conread position: 308-564
Cow position: chr10:22101534-22101785 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 75

Conread position: 313-563
Cow position: chr10:17432952-17432707 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 330-543
Cow position: chr10:66900038-66899832 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 90, 17

Conread position: 331-564
Cow position: chr10:23440848-23440609 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 15, 136

Conread position: 334-559
Cow position: chr10:32557670-32557901 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 163
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 26, 0

Conread position: 336-489
Cow position: chr10:25359725-25359877 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 129
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 8, 25

Conread position: 336-541
Cow position: chr10:32651059-32651262 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 128
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr10:8290304-8290529 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr10:19511932-19512159 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 24

Conread position: 336-564
Cow position: chr10:21487241-21487468 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr10:29846326-29846097 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr10:38345036-38344808 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 336-564
Cow position: chr10:57989668-57989441 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr10:62408525-62408298 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 337-494
Cow position: chr10:8339721-8339879 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 24, 108

Conread position: 337-564
Cow position: chr10:30685186-30684962 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 31

Conread position: 337-564
Cow position: chr10:38538178-38537951 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 48

Conread position: 338-487
Cow position: chr10:62778675-62778824 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 19, 11

Conread position: 340-489
Cow position: chr10:124638-124788 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 122
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 16, 0

Conread position: 340-560
Cow position: chr10:39040974-39040755 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 45

Conread position: 340-564
Cow position: chr10:7281766-7281542 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 21

Conread position: 340-564
Cow position: chr10:10582131-10582354 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 139

Conread position: 345-519
Cow position: chr10:42751306-42751483 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 74, 62

Conread position: 345-559
Cow position: chr10:25564932-25564720 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 117

Conread position: 345-559
Cow position: chr10:44294583-44294372 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 43, 0

Conread position: 346-486
Cow position: chr10:19758675-19758816 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 346-486
Cow position: chr10:19802880-19803021 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 346-492
Cow position: chr10:11685344-11685203 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 14, 0

Conread position: 346-557
Cow position: chr10:41157774-41157986 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr10:280294-280067 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 174
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 151, 21

Conread position: 346-559
Cow position: chr10:5849299-5849085 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr10:11698571-11698784 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 346-559
Cow position: chr10:14804163-14804374 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 105

Conread position: 346-559
Cow position: chr10:19495959-19495745 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 181

Conread position: 346-559
Cow position: chr10:21740425-21740212 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 177

Conread position: 346-559
Cow position: chr10:32578615-32578828 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 91

Conread position: 346-559
Cow position: chr10:39180110-39180326 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 99

Conread position: 346-559
Cow position: chr10:41567429-41567643 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr10:55093592-55093807 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr10:56065000-56065214 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-564
Cow position: chr10:21400344-21400125 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 348-564
Cow position: chr10:16925864-16926083 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 349-487
Cow position: chr10:46694057-46693917 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 0

Conread position: 349-542
Cow position: chr10:54978914-54978723 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 351-564
Cow position: chr10:14335509-14335295 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 8, 16

Conread position: 356-487
Cow position: chr10:62216952-62217083 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 109
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 122

Conread position: 365-560
Cow position: chr10:2120658-2120465 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 367-559
Cow position: chr10:28641888-28642080 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 367-559
Cow position: chr10:51952273-51952081 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 368-487
Cow position: chr10:34686255-34686375 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 384-487
Cow position: chr10:68598924-68598821 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 85
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 391-559
Cow position: chr10:4191865-4191697 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 143
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 392-560
Cow position: chr10:19715187-19715023 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 144
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 399-559
Cow position: chr10:47907311-47907471 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 133
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 400-564
Cow position: chr10:37770754-37770918 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 142
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 407-559
Cow position: chr10:39816097-39815946 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 133
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 72, 0

Conread position: 407-563
Cow position: chr10:40151851-40151700 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 28

Conread position: 408-559
Cow position: chr10:39779630-39779780 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 124
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 77, 0

Conread position: 415-560
Cow position: chr10:60193074-60193219 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 417-553
Cow position: chr10:41632039-41632173 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 110
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 120, 0

Conread position: 420-564
Cow position: chr10:1377649-1377793 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 123
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.