Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 215-464 |
| Cow position: | chr12:1138242-1138486 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 216-555 |
| Cow position: | chr12:21500591-21500928 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 157, 49 |
| Conread position: | 224-557 |
| Cow position: | chr12:348541-348888 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 126 |
| Conread position: | 255-547 |
| Cow position: | chr12:23163131-23162832 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 21, 80 |
| Conread position: | 270-564 |
| Cow position: | chr12:2282744-2283034 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 69 |
| Conread position: | 276-560 |
| Cow position: | chr12:3631671-3631394 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 289-559 |
| Cow position: | chr12:8197411-8197682 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 90 |
| Conread position: | 318-461 |
| Cow position: | chr12:5861408-5861548 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 334-535 |
| Cow position: | chr12:44005146-44004954 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 335-564 |
| Cow position: | chr12:25100811-25100584 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 336-564 |
| Cow position: | chr12:11098493-11098718 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr12:22205497-22205270 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 338-564 |
| Cow position: | chr12:21198211-21198435 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 99 |
| Conread position: | 340-505 |
| Cow position: | chr12:27932692-27932533 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 340-560 |
| Cow position: | chr12:6406398-6406177 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 340-564 |
| Cow position: | chr12:1402743-1402968 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 342-483 |
| Cow position: | chr12:251806-251665 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 342-560 |
| Cow position: | chr12:42859575-42859354 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 345-564 |
| Cow position: | chr12:28765767-28765545 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 346-503 |
| Cow position: | chr12:21208658-21208815 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 346-557 |
| Cow position: | chr12:43031133-43030923 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 346-559 |
| Cow position: | chr12:4157629-4157843 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr12:21254404-21254198 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 346-559 |
| Cow position: | chr12:32653796-32654009 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 346-559 |
| Cow position: | chr12:33986414-33986628 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr12:37558808-37559017 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 11, 75 |
| Conread position: | 348-559 |
| Cow position: | chr12:21426948-21427158 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 349-486 |
| Cow position: | chr12:21942025-21942162 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-557 |
| Cow position: | chr12:14662369-14662161 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 355-564 |
| Cow position: | chr12:27855690-27855488 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 356-562 |
| Cow position: | chr12:21902209-21902416 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 168 |
| Conread position: | 357-482 |
| Cow position: | chr12:45261894-45262020 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 357-487 |
| Cow position: | chr12:8311452-8311580 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 367-559 |
| Cow position: | chr12:16821749-16821941 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-529 |
| Cow position: | chr12:8677767-8677646 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 445-564 |
| Cow position: | chr12:601001-600882 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr12:36367197-36367307 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr12:36427600-36427710 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr12:36448942-36449052 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr12:36479538-36479648 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr12:36482802-36482912 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.