Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-331 |
| Cow position: | chr13:54284583-54284917 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 111, 32 |
| Conread position: | 1-415 |
| Cow position: | chr13:15451543-15451132 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 8 |
| Conread position: | 1-564 |
| Cow position: | chr13:20542362-20541780 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 59 |
| Conread position: | 1-564 |
| Cow position: | chr13:26843806-26844342 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 90-555 |
| Cow position: | chr13:34937281-34937737 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 30 |
| Conread position: | 129-564 |
| Cow position: | chr13:43983272-43982827 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 277 |
| Conread position: | 176-495 |
| Cow position: | chr13:34767012-34766685 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 168 |
| Conread position: | 198-557 |
| Cow position: | chr13:34028964-34029330 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 66 |
| Conread position: | 218-512 |
| Cow position: | chr13:48357478-48357767 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 109 |
| Conread position: | 225-554 |
| Cow position: | chr13:46731804-46731479 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 191 |
| Conread position: | 233-492 |
| Cow position: | chr13:60700927-60700662 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 102 |
| Conread position: | 238-560 |
| Cow position: | chr13:22185299-22184984 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 23 |
| Conread position: | 238-560 |
| Cow position: | chr13:31556789-31556468 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 72, 60 |
| Conread position: | 239-559 |
| Cow position: | chr13:2582734-2582406 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 139 |
| Conread position: | 243-553 |
| Cow position: | chr13:27922293-27921983 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 244-560 |
| Cow position: | chr13:34048561-34048875 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 92 |
| Conread position: | 244-564 |
| Cow position: | chr13:29202431-29202099 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 36, 89 |
| Conread position: | 251-554 |
| Cow position: | chr13:19413169-19413467 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 54 |
| Conread position: | 254-556 |
| Cow position: | chr13:27652560-27652852 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 257-563 |
| Cow position: | chr13:35030492-35030793 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 11, 41 |
| Conread position: | 277-492 |
| Cow position: | chr13:32523634-32523415 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 164, 27 |
| Conread position: | 287-564 |
| Cow position: | chr13:21131920-21132195 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 72, 47 |
| Conread position: | 300-520 |
| Cow position: | chr13:30262356-30262569 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 196, 27 |
| Conread position: | 303-512 |
| Cow position: | chr13:11763819-11763609 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 81, 42 |
| Conread position: | 313-556 |
| Cow position: | chr13:11064157-11063925 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 322-564 |
| Cow position: | chr13:33336404-33336171 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 325-505 |
| Cow position: | chr13:11799733-11799558 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 332-487 |
| Cow position: | chr13:2908409-2908252 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 335-560 |
| Cow position: | chr13:34868771-34868995 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 336-477 |
| Cow position: | chr13:4178621-4178480 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 336-564 |
| Cow position: | chr13:4483824-4484052 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr13:4941118-4941338 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr13:9044530-9044757 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr13:15520485-15520255 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr13:15924354-15924127 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr13:35757271-35757498 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 338-487 |
| Cow position: | chr13:3277185-3277335 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 9, 98 |
| Conread position: | 340-560 |
| Cow position: | chr13:30238278-30238497 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 340-560 |
| Cow position: | chr13:34042337-34042116 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-564 |
| Cow position: | chr13:1593123-1592900 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 340-564 |
| Cow position: | chr13:32737790-32737570 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 345-487 |
| Cow position: | chr13:33927556-33927412 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:2388787-2388573 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:3058079-3057865 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 189 |
| Conread position: | 346-559 |
| Cow position: | chr13:13324780-13324994 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:21840163-21839953 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 42 |
| Conread position: | 346-559 |
| Cow position: | chr13:30244647-30244433 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:31734054-31733840 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:47229970-47229756 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr13:49973715-49973929 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 78 |
| Conread position: | 346-559 |
| Cow position: | chr13:60466368-60466581 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 102 |
| Conread position: | 346-560 |
| Cow position: | chr13:2296780-2296571 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-564 |
| Cow position: | chr13:17308506-17308724 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 121 |
| Conread position: | 348-559 |
| Cow position: | chr13:50109495-50109705 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 348-564 |
| Cow position: | chr13:23003267-23003052 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 349-563 |
| Cow position: | chr13:34325521-34325306 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 18 |
| Conread position: | 351-564 |
| Cow position: | chr13:6668077-6667863 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 351-564 |
| Cow position: | chr13:30303319-30303532 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 141 |
| Conread position: | 353-559 |
| Cow position: | chr13:32985306-32985101 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 356-487 |
| Cow position: | chr13:34142614-34142482 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-488 |
| Cow position: | chr13:34693214-34693347 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-555 |
| Cow position: | chr13:22766073-22766273 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 358-485 |
| Cow position: | chr13:33824684-33824558 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 368-487 |
| Cow position: | chr13:31832661-31832774 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 368-564 |
| Cow position: | chr13:3654263-3654064 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 370-564 |
| Cow position: | chr13:30656917-30656725 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 155 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 407-559 |
| Cow position: | chr13:41315952-41316104 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 130 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-564 |
| Cow position: | chr13:57023802-57023959 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 408-564 |
| Cow position: | chr13:34911063-34910908 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 409-495 |
| Cow position: | chr13:30262705-30262791 (view UCSC Genome Browser custom track) |
| Alignm length: | 87 |
| Alignm identity: | 77 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-560 |
| Cow position: | chr13:15451006-15450860 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 413-559 |
| Cow position: | chr13:58118808-58118663 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 127 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 415-564 |
| Cow position: | chr13:31612201-31612052 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 132 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-564 |
| Cow position: | chr13:32545484-32545633 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 128 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 415-564 |
| Cow position: | chr13:36959443-36959295 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 421-559 |
| Cow position: | chr13:676970-677108 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-564 |
| Cow position: | chr13:13900010-13900122 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.