Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8026J10.5
        

               Conread position:
               1-214
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               25, 80
               

               Conread position:
               1-417
               

               Cow position:
               
               

               Alignm length:
               434
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 128
               

               Conread position:
               1-564
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               418
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 138
               

               Conread position:
               76-385
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               84, 38
               

               Conread position:
               78-560
               

               Cow position:
               
               

               Alignm length:
               499
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 14
               

               Conread position:
               99-409
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               215
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               10, 23
               

               Conread position:
               113-370
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               86, 41
               

               Conread position:
               154-555
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               275
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               37, 23
               

               Conread position:
               156-560
               

               Cow position:
               
               

               Alignm length:
               420
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 39
               

               Conread position:
               208-560
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               22, 7
               

               Conread position:
               211-559
               

               Cow position:
               
               

               Alignm length:
               358
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               66, 16
               

               Conread position:
               211-564
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 11
               

               Conread position:
               215-557
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               59, 220
               

               Conread position:
               215-557
               

               Cow position:
               
               

               Alignm length:
               353
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 102
               

               Conread position:
               216-559
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               233
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               63, 115
               

               Conread position:
               225-564
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 86
               

               Conread position:
               226-505
               

               Cow position:
               
               

               Alignm length:
               291
               

               Alignm identity:
               205
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               52, 111
               

               Conread position:
               228-415
               

               Cow position:
               
               

               Alignm length:
               195
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-26
               

               Alignm gaps (pig, cow):
               59, 109
               

               Conread position:
               233-560
               

               Cow position:
               
               

               Alignm length:
               339
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 213
               

               Conread position:
               238-564
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 93
               

               Conread position:
               238-564
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               35, 102
               

               Conread position:
               243-492
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               101, 44
               

               Conread position:
               243-559
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               226
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               39, 22
               

               Conread position:
               244-564
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 94
               

               Conread position:
               249-563
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               250-552
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 91
               

               Conread position:
               250-564
               

               Cow position:
               
               

               Alignm length:
               325
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 78
               

               Conread position:
               255-510
               

               Cow position:
               
               

               Alignm length:
               272
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               257-559
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               211
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               112, 33
               

               Conread position:
               259-559
               

               Cow position:
               
               

               Alignm length:
               305
               

               Alignm identity:
               214
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               8, 147
               

               Conread position:
               262-564
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               20, 44
               

               Conread position:
               274-564
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 35
               

               Conread position:
               276-555
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               298-564
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               90, 10
               

               Conread position:
               301-483
               

               Cow position:
               
               

               Alignm length:
               183
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               34, 0
               

               Conread position:
               327-564
               

               Cow position:
               
               

               Alignm length:
               238
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               328-564
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               32, 11
               

               Conread position:
               335-463
               

               Cow position:
               
               

               Alignm length:
               130
               

               Alignm identity:
               101
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               9, 39
               

               Conread position:
               335-555
               

               Cow position:
               
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               18, 0
               

               Conread position:
               336-491
               

               Cow position:
               
               

               Alignm length:
               157
               

               Alignm identity:
               129
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               336-545
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               336-560
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               181
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 26
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 31
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               229
               

               Alignm identity:
               188
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               336-564
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 25
               

               Conread position:
               337-492
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               114
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               146, 16
               

               Conread position:
               337-529
               

               Cow position:
               
               

               Alignm length:
               193
               

               Alignm identity:
               150
               

               Alignm E-value:
               7.00005e-41
               

               Alignm gaps (pig, cow):
               154, 0
               

               Conread position:
               337-564
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 0
               

               Conread position:
               338-487
               

               Cow position:
               
               

               Alignm length:
               150
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               35, 0
               

               Conread position:
               338-488
               

               Cow position:
               
               

               Alignm length:
               154
               

               Alignm identity:
               112
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               338-559
               

               Cow position:
               
               

               Alignm length:
               222
               

               Alignm identity:
               169
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               340-489
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               118
               

               Alignm E-value:
               6e-29
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               340-560
               

               Cow position:
               
               

               Alignm length:
               223
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 53
               

               Conread position:
               340-564
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               176
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               18, 45
               

               Conread position:
               340-564
               

               Cow position:
               
               

               Alignm length:
               227
               

               Alignm identity:
               184
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 45
               

               Conread position:
               340-564
               

               Cow position:
               
               

               Alignm length:
               226
               

               Alignm identity:
               170
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               16, 9
               

               Conread position:
               341-560
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               174
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               15, 48
               

               Conread position:
               342-504
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               120
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               23, 121
               

               Conread position:
               342-564
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 11
               

               Conread position:
               345-560
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               346-529
               

               Cow position:
               
               

               Alignm length:
               185
               

               Alignm identity:
               148
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               346-543
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               159
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               20, 146
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 166
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               166
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               167
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               11, 154
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               217
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               56, 21
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 190
               

               Conread position:
               346-559
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               156
               

               Alignm E-value:
               3e-33
               

               Alignm gaps (pig, cow):
               7, 21
               

               Conread position:
               346-562
               

               Cow position:
               
               

               Alignm length:
               220
               

               Alignm identity:
               175
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 62
               

               Conread position:
               348-560
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-36
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               349-564
               

               Cow position:
               
               

               Alignm length:
               216
               

               Alignm identity:
               180
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               350-564
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               351-560
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               171
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               351-564
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 27
               

               Conread position:
               353-564
               

               Cow position:
               
               

               Alignm length:
               214
               

               Alignm identity:
               178
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 32
               

               Conread position:
               354-564
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 0
               

               Conread position:
               355-560
               

               Cow position:
               
               

               Alignm length:
               206
               

               Alignm identity:
               168
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               356-464
               

               Cow position:
               
               

               Alignm length:
               109
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               356-487
               

               Cow position:
               
               

               Alignm length:
               133
               

               Alignm identity:
               107
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 0
               

               Conread position:
               356-503
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               13, 129
               

               Conread position:
               356-519
               

               Cow position:
               
               

               Alignm length:
               164
               

               Alignm identity:
               135
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               358-556
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               160
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               367-557
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               164
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 66
               

               Conread position:
               368-487
               

               Cow position:
               
               

               Alignm length:
               121
               

               Alignm identity:
               102
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               28, 15
               

               Conread position:
               384-564
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               145
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               11, 92
               

               Conread position:
               394-564
               

               Cow position:
               
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               68, 0
               

               Conread position:
               399-564
               

               Cow position:
               
               

               Alignm length:
               166
               

               Alignm identity:
               136
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               400-562
               

               Cow position:
               
               

               Alignm length:
               163
               

               Alignm identity:
               138
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               401-503
               

               Cow position:
               
               

               Alignm length:
               103
               

               Alignm identity:
               86
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               402-556
               

               Cow position:
               
               

               Alignm length:
               155
               

               Alignm identity:
               127
               

               Alignm E-value:
               5e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               403-559
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               407-564
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               408-563
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               409-564
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               123
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               137, 0
               

               Conread position:
               412-563
               

               Cow position:
               
               

               Alignm length:
               152
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.