Cow genome map

Conread name: Ss1.1-Pig4-TMW8026J10.5

Conread position: 1-214
Cow position: chr14:45303475-45303260 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 25, 80

Conread position: 1-417
Cow position: chr14:40339572-40339985 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 128

Conread position: 1-564
Cow position: chr14:35387261-35386681 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 138

Conread position: 76-385
Cow position: chr14:46084585-46084901 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 236
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 84, 38

Conread position: 78-560
Cow position: chr14:44377447-44377929 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 14

Conread position: 99-409
Cow position: chr14:33675891-33676217 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 215
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 23

Conread position: 113-370
Cow position: chr14:17764788-17764519 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 86, 41

Conread position: 154-555
Cow position: chr14:35366705-35366321 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 275
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 37, 23

Conread position: 156-560
Cow position: chr14:37457682-37457279 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 39

Conread position: 208-560
Cow position: chr14:41408654-41409013 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 7

Conread position: 211-559
Cow position: chr14:21743739-21744092 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 225
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 16

Conread position: 211-564
Cow position: chr14:33341912-33342264 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 11

Conread position: 215-557
Cow position: chr14:38146772-38147136 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 254
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 220

Conread position: 215-557
Cow position: chr14:44581146-44581488 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 102

Conread position: 216-559
Cow position: chr14:35423415-35423748 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 115

Conread position: 225-564
Cow position: chr14:37413653-37413310 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 86

Conread position: 226-505
Cow position: chr14:34776016-34776298 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 52, 111

Conread position: 228-415
Cow position: chr14:48824977-48825165 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 109

Conread position: 233-560
Cow position: chr14:14308765-14308429 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 213

Conread position: 238-564
Cow position: chr14:33236845-33237170 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 93

Conread position: 238-564
Cow position: chr14:46513343-46513670 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 35, 102

Conread position: 243-492
Cow position: chr14:33487755-33488002 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 101, 44

Conread position: 243-559
Cow position: chr14:46529042-46529350 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 22

Conread position: 244-564
Cow position: chr14:45303140-45302825 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 94

Conread position: 249-563
Cow position: chr14:30596575-30596252 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 250-552
Cow position: chr14:38815992-38815688 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 32, 91

Conread position: 250-564
Cow position: chr14:44257159-44256838 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 78

Conread position: 255-510
Cow position: chr14:20972330-20972059 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 257-559
Cow position: chr14:9101877-9101595 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 112, 33

Conread position: 259-559
Cow position: chr14:44776226-44775925 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 214
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 8, 147

Conread position: 262-564
Cow position: chr14:30706450-30706154 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 44

Conread position: 274-564
Cow position: chr14:13302862-13303155 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 35

Conread position: 276-555
Cow position: chr14:47922959-47923231 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 298-564
Cow position: chr14:46518967-46519218 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 191
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 90, 10

Conread position: 301-483
Cow position: chr14:22242758-22242933 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 327-564
Cow position: chr14:46474735-46474970 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 328-564
Cow position: chr14:40738412-40738641 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 11

Conread position: 335-463
Cow position: chr14:42198743-42198871 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 39

Conread position: 335-555
Cow position: chr14:13864177-13863964 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 18, 0

Conread position: 336-491
Cow position: chr14:15276674-15276520 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 129
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 26

Conread position: 336-545
Cow position: chr14:28993948-28993740 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 336-560
Cow position: chr14:7472274-7472488 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr14:5511728-5511955 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 336-564
Cow position: chr14:11154260-11154033 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr14:13778861-13779085 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr14:17685302-17685529 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 336-564
Cow position: chr14:20782362-20782589 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 336-564
Cow position: chr14:37223807-37224032 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 336-564
Cow position: chr14:48254399-48254170 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 337-492
Cow position: chr14:9515914-9515759 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 146, 16

Conread position: 337-529
Cow position: chr14:46464983-46465174 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 150
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 154, 0

Conread position: 337-564
Cow position: chr14:22031518-22031289 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 338-487
Cow position: chr14:45851129-45851277 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 338-488
Cow position: chr14:36968162-36968315 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 338-559
Cow position: chr14:30585049-30584832 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 21, 0

Conread position: 340-489
Cow position: chr14:5201174-5201023 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 340-560
Cow position: chr14:5528970-5529190 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 53

Conread position: 340-564
Cow position: chr14:16273388-16273170 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 176
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 45

Conread position: 340-564
Cow position: chr14:19328360-19328137 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 340-564
Cow position: chr14:44226304-44226527 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 16, 9

Conread position: 341-560
Cow position: chr14:44551791-44552020 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 174
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 15, 48

Conread position: 342-504
Cow position: chr14:45767913-45768074 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 120
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 23, 121

Conread position: 342-564
Cow position: chr14:12743161-12742939 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 11

Conread position: 345-560
Cow position: chr14:45029217-45029002 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 346-529
Cow position: chr14:23900893-23900709 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 148
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 20, 0

Conread position: 346-543
Cow position: chr14:750477-750674 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 159
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 146

Conread position: 346-559
Cow position: chr14:2284246-2284459 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 166

Conread position: 346-559
Cow position: chr14:9045473-9045688 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr14:17491549-17491336 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 154

Conread position: 346-559
Cow position: chr14:23257266-23257480 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr14:29047996-29047782 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr14:33393869-33393657 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 170
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 56, 21

Conread position: 346-559
Cow position: chr14:45672138-45671926 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 190

Conread position: 346-559
Cow position: chr14:48970595-48970806 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 7, 21

Conread position: 346-562
Cow position: chr14:45834061-45834276 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 62

Conread position: 348-560
Cow position: chr14:13621226-13621016 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 9, 57

Conread position: 349-564
Cow position: chr14:17001142-17000930 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 350-564
Cow position: chr14:44685962-44686176 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 351-560
Cow position: chr14:45161016-45161226 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 351-564
Cow position: chr14:44287331-44287118 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 27

Conread position: 353-564
Cow position: chr14:50110488-50110700 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 32

Conread position: 354-564
Cow position: chr14:16919766-16919559 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 355-560
Cow position: chr14:17760976-17760771 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 356-464
Cow position: chr14:13273172-13273280 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 356-487
Cow position: chr14:23690304-23690172 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 0

Conread position: 356-503
Cow position: chr14:7830615-7830470 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 129

Conread position: 356-519
Cow position: chr14:19620145-19620308 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 135
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 358-556
Cow position: chr14:45080972-45081168 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 367-557
Cow position: chr14:45712056-45711864 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 66

Conread position: 368-487
Cow position: chr14:44855486-44855367 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 28, 15

Conread position: 384-564
Cow position: chr14:30735315-30735134 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 145
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 11, 92

Conread position: 394-564
Cow position: chr14:12610419-12610578 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 125
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 399-564
Cow position: chr14:29777536-29777371 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 136
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 400-562
Cow position: chr14:43557940-43558100 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 138
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 66, 0

Conread position: 401-503
Cow position: chr14:44422832-44422931 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 83, 0

Conread position: 402-556
Cow position: chr14:48825264-48825418 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 127
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 403-559
Cow position: chr14:45917613-45917770 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 130
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 83, 0

Conread position: 407-564
Cow position: chr14:38531763-38531606 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 408-563
Cow position: chr14:50138569-50138723 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 129
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 409-564
Cow position: chr14:40340744-40340897 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 137, 0

Conread position: 412-563
Cow position: chr14:45206291-45206442 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 125
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.