Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-419 |
| Cow position: | chr16:5652307-5652743 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 74 |
| Conread position: | 1-536 |
| Cow position: | chr16:49235607-49235069 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 58 |
| Conread position: | 1-559 |
| Cow position: | chr16:25257147-25257718 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 1-560 |
| Cow position: | chr16:25156680-25156095 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 133 |
| Conread position: | 1-560 |
| Cow position: | chr16:42739881-42739324 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 1-564 |
| Cow position: | chr16:29033260-29033828 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 73-556 |
| Cow position: | chr16:54178072-54177606 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 317 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 329, 19 |
| Conread position: | 117-392 |
| Cow position: | chr16:18499381-18499094 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 82, 241 |
| Conread position: | 117-547 |
| Cow position: | chr16:18764274-18763852 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 34 |
| Conread position: | 118-564 |
| Cow position: | chr16:9930288-9930722 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 120-559 |
| Cow position: | chr16:47563727-47564183 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 21, 317 |
| Conread position: | 131-560 |
| Cow position: | chr16:23807778-23808204 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 149-453 |
| Cow position: | chr16:49256764-49256448 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 233 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 48, 225 |
| Conread position: | 149-560 |
| Cow position: | chr16:5889890-5890294 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 50, 206 |
| Conread position: | 199-480 |
| Cow position: | chr16:37457167-37456876 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 215-560 |
| Cow position: | chr16:16272164-16271819 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 163 |
| Conread position: | 229-563 |
| Cow position: | chr16:28437949-28437602 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 238-518 |
| Cow position: | chr16:41756854-41756578 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 238-564 |
| Cow position: | chr16:25170792-25171138 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 44, 203 |
| Conread position: | 241-559 |
| Cow position: | chr16:6717076-6716748 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 89 |
| Conread position: | 250-560 |
| Cow position: | chr16:34529784-34530104 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 83 |
| Conread position: | 302-564 |
| Cow position: | chr16:836570-836833 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 34 |
| Conread position: | 309-529 |
| Cow position: | chr16:25085177-25085393 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 321-564 |
| Cow position: | chr16:18687585-18687342 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 330-532 |
| Cow position: | chr16:48915602-48915400 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 334-564 |
| Cow position: | chr16:31592349-31592127 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 335-487 |
| Cow position: | chr16:36361805-36361655 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 23, 118 |
| Conread position: | 336-527 |
| Cow position: | chr16:15184363-15184552 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-560 |
| Cow position: | chr16:10203870-10203656 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr16:25341525-25341749 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-564 |
| Cow position: | chr16:10437801-10438028 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr16:15566302-15566527 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 336-564 |
| Cow position: | chr16:25441184-25441413 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr16:25457905-25457678 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr16:26663309-26663538 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr16:40296618-40296391 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr16:43897711-43897485 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 337-564 |
| Cow position: | chr16:23982871-23983095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 338-508 |
| Cow position: | chr16:29675818-29675648 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 28, 149 |
| Conread position: | 340-563 |
| Cow position: | chr16:1567892-1567668 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-564 |
| Cow position: | chr16:407469-407245 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr16:2727726-2727501 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-564 |
| Cow position: | chr16:8816542-8816319 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 340-564 |
| Cow position: | chr16:12538363-12538139 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 44 |
| Conread position: | 340-564 |
| Cow position: | chr16:23252945-23252720 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 193 |
| Conread position: | 340-564 |
| Cow position: | chr16:27734230-27733989 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 340-564 |
| Cow position: | chr16:29046584-29046808 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 208 |
| Conread position: | 342-557 |
| Cow position: | chr16:47473140-47473350 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 345-475 |
| Cow position: | chr16:19713319-19713189 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 345-564 |
| Cow position: | chr16:2411399-2411181 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 346-555 |
| Cow position: | chr16:10376017-10375807 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 346-559 |
| Cow position: | chr16:32299-32514 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr16:5661411-5661624 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 346-559 |
| Cow position: | chr16:25188203-25188411 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 346-559 |
| Cow position: | chr16:28170802-28170591 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 346-559 |
| Cow position: | chr16:31832193-31832407 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 187 |
| Conread position: | 346-559 |
| Cow position: | chr16:53045915-53046129 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 347-559 |
| Cow position: | chr16:4302769-4302558 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 120 |
| Conread position: | 348-564 |
| Cow position: | chr16:5483886-5484106 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 349-505 |
| Cow position: | chr16:1431728-1431885 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 351-563 |
| Cow position: | chr16:2239167-2238955 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 149 |
| Conread position: | 351-564 |
| Cow position: | chr16:2483569-2483354 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 95 |
| Conread position: | 351-564 |
| Cow position: | chr16:28471529-28471316 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 356-487 |
| Cow position: | chr16:20254732-20254600 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-487 |
| Cow position: | chr16:36282974-36283104 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 356-490 |
| Cow position: | chr16:14430172-14430307 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-496 |
| Cow position: | chr16:50506767-50506908 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 374-559 |
| Cow position: | chr16:41163469-41163284 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 394-564 |
| Cow position: | chr16:18498701-18498533 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 398-564 |
| Cow position: | chr16:24105325-24105490 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 406-564 |
| Cow position: | chr16:25892347-25892503 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 408-564 |
| Cow position: | chr16:14666182-14666026 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 132 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-564 |
| Cow position: | chr16:15492875-15493015 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 427-555 |
| Cow position: | chr16:36232090-36231962 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 452-560 |
| Cow position: | chr16:4479309-4479201 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 457-559 |
| Cow position: | chr16:28198000-28197898 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 83 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-564 |
| Cow position: | chr16:15476531-15476629 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.