Cow genome map

Conread name: Ss1.1-Pig4-TMW8026J10.5

Conread position: 1-259
Cow position: chr17:14325392-14325125 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 198
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 32, 128

Conread position: 57-263
Cow position: chr17:36987517-36987306 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 142, 57

Conread position: 84-375
Cow position: chr17:20401949-20402262 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 218
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 9, 264

Conread position: 93-409
Cow position: chr17:152206-151895 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 218
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 31

Conread position: 128-556
Cow position: chr17:4081974-4082415 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 299
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 84, 67

Conread position: 128-564
Cow position: chr17:42264833-42265285 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 305
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 71, 250

Conread position: 151-564
Cow position: chr17:18300462-18300036 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 259

Conread position: 181-557
Cow position: chr17:3708806-3708427 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 5, 37

Conread position: 216-564
Cow position: chr17:12670062-12669712 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 138

Conread position: 218-564
Cow position: chr17:11026795-11026445 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 9

Conread position: 223-559
Cow position: chr17:20488018-20488358 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 145

Conread position: 224-556
Cow position: chr17:19019595-19019925 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 242
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 57, 80

Conread position: 233-446
Cow position: chr17:16900127-16899909 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 154
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 47

Conread position: 244-559
Cow position: chr17:1657798-1657489 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 63, 36

Conread position: 257-516
Cow position: chr17:21354152-21354404 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 106, 6

Conread position: 257-564
Cow position: chr17:1880142-1880448 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 11, 56

Conread position: 276-560
Cow position: chr17:15384361-15384641 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 22

Conread position: 306-557
Cow position: chr17:14307957-14307712 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 28, 21

Conread position: 325-560
Cow position: chr17:2174015-2174238 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 178
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 51, 11

Conread position: 329-560
Cow position: chr17:14040896-14040675 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 175
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 14, 0

Conread position: 335-564
Cow position: chr17:16857387-16857161 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 32, 49

Conread position: 336-555
Cow position: chr17:25737801-25738018 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 336-559
Cow position: chr17:40804955-40805177 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 336-560
Cow position: chr17:19269228-19269007 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr17:2579753-2579979 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 336-564
Cow position: chr17:14894291-14894518 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr17:15850535-15850762 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr17:18103547-18103325 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 340-563
Cow position: chr17:11087584-11087363 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 340-564
Cow position: chr17:3642696-3642468 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 44

Conread position: 340-564
Cow position: chr17:6259984-6260207 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 52

Conread position: 341-503
Cow position: chr17:13856630-13856468 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 133
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 25, 151

Conread position: 342-487
Cow position: chr17:602295-602151 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 343-559
Cow position: chr17:24782303-24782518 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 180

Conread position: 345-487
Cow position: chr17:22429340-22429198 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 45, 22

Conread position: 345-564
Cow position: chr17:22132376-22132594 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 168
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 346-471
Cow position: chr17:2555860-2555735 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 20, 89

Conread position: 346-487
Cow position: chr17:20073100-20072957 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 115
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 346-538
Cow position: chr17:181502-181693 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 155
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 113

Conread position: 346-546
Cow position: chr17:24634093-24634294 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-547
Cow position: chr17:2248445-2248243 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 20, 0

Conread position: 346-553
Cow position: chr17:14216887-14216679 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-557
Cow position: chr17:20087597-20087390 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 346-559
Cow position: chr17:1382675-1382461 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr17:2262241-2262456 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr17:6119847-6120061 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 122

Conread position: 346-559
Cow position: chr17:8209245-8209460 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr17:15143228-15143014 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr17:15435930-15436144 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr17:20665587-20665372 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr17:23324315-23324101 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr17:31767900-31767686 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr17:34156267-34156481 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr17:43952424-43952210 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-560
Cow position: chr17:15156825-15156611 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 166
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 11, 50

Conread position: 350-564
Cow position: chr17:4060247-4060463 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 170
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 9, 37

Conread position: 351-529
Cow position: chr17:24029849-24029670 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 351-557
Cow position: chr17:18185384-18185184 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 15, 135

Conread position: 351-564
Cow position: chr17:6068711-6068919 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 33

Conread position: 353-560
Cow position: chr17:250310-250520 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 63, 0

Conread position: 357-487
Cow position: chr17:27345956-27346086 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 12, 116

Conread position: 367-560
Cow position: chr17:228147-227954 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 152
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 368-487
Cow position: chr17:35592386-35592505 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 393-560
Cow position: chr17:151684-151518 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 129
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 41, 0

Conread position: 395-564
Cow position: chr17:5226812-5226981 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 144
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 399-564
Cow position: chr17:15324021-15324186 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 137
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 408-559
Cow position: chr17:11376582-11376431 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 130
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 409-564
Cow position: chr17:20183642-20183788 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 413-564
Cow position: chr17:14051903-14051752 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 91, 53

Conread position: 429-564
Cow position: chr17:18194054-18194190 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.