Cow genome map
Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
Conread position: | 1-259 |
Cow position: | chr17:14325392-14325125 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 198 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 32, 128 |
Conread position: | 57-263 |
Cow position: | chr17:36987517-36987306 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 153 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 142, 57 |
Conread position: | 84-375 |
Cow position: | chr17:20401949-20402262 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 218 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 9, 264 |
Conread position: | 93-409 |
Cow position: | chr17:152206-151895 (view UCSC Genome Browser custom track) |
Alignm length: | 328 |
Alignm identity: | 218 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 10, 31 |
Conread position: | 128-556 |
Cow position: | chr17:4081974-4082415 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 299 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 84, 67 |
Conread position: | 128-564 |
Cow position: | chr17:42264833-42265285 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 305 |
Alignm E-value: | 5.99994e-41 |
Alignm gaps (pig, cow): | 71, 250 |
Conread position: | 151-564 |
Cow position: | chr17:18300462-18300036 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 48, 259 |
Conread position: | 181-557 |
Cow position: | chr17:3708806-3708427 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 268 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 5, 37 |
Conread position: | 216-564 |
Cow position: | chr17:12670062-12669712 (view UCSC Genome Browser custom track) |
Alignm length: | 355 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 138 |
Conread position: | 218-564 |
Cow position: | chr17:11026795-11026445 (view UCSC Genome Browser custom track) |
Alignm length: | 359 |
Alignm identity: | 234 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 60, 9 |
Conread position: | 223-559 |
Cow position: | chr17:20488018-20488358 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 49, 145 |
Conread position: | 224-556 |
Cow position: | chr17:19019595-19019925 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 242 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 57, 80 |
Conread position: | 233-446 |
Cow position: | chr17:16900127-16899909 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 154 |
Alignm E-value: | 7e-21 |
Alignm gaps (pig, cow): | 67, 47 |
Conread position: | 244-559 |
Cow position: | chr17:1657798-1657489 (view UCSC Genome Browser custom track) |
Alignm length: | 320 |
Alignm identity: | 215 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 63, 36 |
Conread position: | 257-516 |
Cow position: | chr17:21354152-21354404 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 173 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 106, 6 |
Conread position: | 257-564 |
Cow position: | chr17:1880142-1880448 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 227 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 11, 56 |
Conread position: | 276-560 |
Cow position: | chr17:15384361-15384641 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 211 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 22 |
Conread position: | 306-557 |
Cow position: | chr17:14307957-14307712 (view UCSC Genome Browser custom track) |
Alignm length: | 253 |
Alignm identity: | 175 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 28, 21 |
Conread position: | 325-560 |
Cow position: | chr17:2174015-2174238 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 178 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 51, 11 |
Conread position: | 329-560 |
Cow position: | chr17:14040896-14040675 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 175 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 335-564 |
Cow position: | chr17:16857387-16857161 (view UCSC Genome Browser custom track) |
Alignm length: | 231 |
Alignm identity: | 171 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 32, 49 |
Conread position: | 336-555 |
Cow position: | chr17:25737801-25738018 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 176 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 336-559 |
Cow position: | chr17:40804955-40805177 (view UCSC Genome Browser custom track) |
Alignm length: | 224 |
Alignm identity: | 180 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 336-560 |
Cow position: | chr17:19269228-19269007 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 25 |
Conread position: | 336-564 |
Cow position: | chr17:2579753-2579979 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 26 |
Conread position: | 336-564 |
Cow position: | chr17:14894291-14894518 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 187 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 25 |
Conread position: | 336-564 |
Cow position: | chr17:15850535-15850762 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 182 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 25 |
Conread position: | 336-564 |
Cow position: | chr17:18103547-18103325 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 8, 25 |
Conread position: | 340-563 |
Cow position: | chr17:11087584-11087363 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 44 |
Conread position: | 340-564 |
Cow position: | chr17:3642696-3642468 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 188 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 44 |
Conread position: | 340-564 |
Cow position: | chr17:6259984-6260207 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 52 |
Conread position: | 341-503 |
Cow position: | chr17:13856630-13856468 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 133 |
Alignm E-value: | 1e-37 |
Alignm gaps (pig, cow): | 25, 151 |
Conread position: | 342-487 |
Cow position: | chr17:602295-602151 (view UCSC Genome Browser custom track) |
Alignm length: | 146 |
Alignm identity: | 116 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 343-559 |
Cow position: | chr17:24782303-24782518 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 173 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 180 |
Conread position: | 345-487 |
Cow position: | chr17:22429340-22429198 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 108 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 45, 22 |
Conread position: | 345-564 |
Cow position: | chr17:22132376-22132594 (view UCSC Genome Browser custom track) |
Alignm length: | 220 |
Alignm identity: | 168 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 346-471 |
Cow position: | chr17:2555860-2555735 (view UCSC Genome Browser custom track) |
Alignm length: | 127 |
Alignm identity: | 98 |
Alignm E-value: | 8e-22 |
Alignm gaps (pig, cow): | 20, 89 |
Conread position: | 346-487 |
Cow position: | chr17:20073100-20072957 (view UCSC Genome Browser custom track) |
Alignm length: | 144 |
Alignm identity: | 115 |
Alignm E-value: | 6e-30 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-538 |
Cow position: | chr17:181502-181693 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 155 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 11, 113 |
Conread position: | 346-546 |
Cow position: | chr17:24634093-24634294 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 160 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-547 |
Cow position: | chr17:2248445-2248243 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 153 |
Alignm E-value: | 5e-39 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-553 |
Cow position: | chr17:14216887-14216679 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 167 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-557 |
Cow position: | chr17:20087597-20087390 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 346-559 |
Cow position: | chr17:1382675-1382461 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-559 |
Cow position: | chr17:2262241-2262456 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 170 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-559 |
Cow position: | chr17:6119847-6120061 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 173 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 122 |
Conread position: | 346-559 |
Cow position: | chr17:8209245-8209460 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 169 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-559 |
Cow position: | chr17:15143228-15143014 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 170 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-559 |
Cow position: | chr17:15435930-15436144 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 167 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-559 |
Cow position: | chr17:20665587-20665372 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 168 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-559 |
Cow position: | chr17:23324315-23324101 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 170 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 0 |
Conread position: | 346-559 |
Cow position: | chr17:31767900-31767686 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 173 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-559 |
Cow position: | chr17:34156267-34156481 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-559 |
Cow position: | chr17:43952424-43952210 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 172 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 346-560 |
Cow position: | chr17:15156825-15156611 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 166 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 11, 50 |
Conread position: | 350-564 |
Cow position: | chr17:4060247-4060463 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 170 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 9, 37 |
Conread position: | 351-529 |
Cow position: | chr17:24029849-24029670 (view UCSC Genome Browser custom track) |
Alignm length: | 180 |
Alignm identity: | 156 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 351-557 |
Cow position: | chr17:18185384-18185184 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 150 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 15, 135 |
Conread position: | 351-564 |
Cow position: | chr17:6068711-6068919 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 177 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 33 |
Conread position: | 353-560 |
Cow position: | chr17:250310-250520 (view UCSC Genome Browser custom track) |
Alignm length: | 211 |
Alignm identity: | 163 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 63, 0 |
Conread position: | 357-487 |
Cow position: | chr17:27345956-27346086 (view UCSC Genome Browser custom track) |
Alignm length: | 132 |
Alignm identity: | 107 |
Alignm E-value: | 5e-28 |
Alignm gaps (pig, cow): | 12, 116 |
Conread position: | 367-560 |
Cow position: | chr17:228147-227954 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 152 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 368-487 |
Cow position: | chr17:35592386-35592505 (view UCSC Genome Browser custom track) |
Alignm length: | 120 |
Alignm identity: | 97 |
Alignm E-value: | 4e-26 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 393-560 |
Cow position: | chr17:151684-151518 (view UCSC Genome Browser custom track) |
Alignm length: | 168 |
Alignm identity: | 129 |
Alignm E-value: | 8e-33 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 395-564 |
Cow position: | chr17:5226812-5226981 (view UCSC Genome Browser custom track) |
Alignm length: | 170 |
Alignm identity: | 144 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 399-564 |
Cow position: | chr17:15324021-15324186 (view UCSC Genome Browser custom track) |
Alignm length: | 166 |
Alignm identity: | 137 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 408-559 |
Cow position: | chr17:11376582-11376431 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 130 |
Alignm E-value: | 1.99965e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 409-564 |
Cow position: | chr17:20183642-20183788 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 123 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 413-564 |
Cow position: | chr17:14051903-14051752 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 123 |
Alignm E-value: | 7e-32 |
Alignm gaps (pig, cow): | 91, 53 |
Conread position: | 429-564 |
Cow position: | chr17:18194054-18194190 (view UCSC Genome Browser custom track) |
Alignm length: | 137 |
Alignm identity: | 105 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.