Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-422 |
| Cow position: | chr18:29237137-29237566 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 334 |
| Conread position: | 1-564 |
| Cow position: | chr18:54171535-54170966 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 222 |
| Conread position: | 84-350 |
| Cow position: | chr18:16842841-16842568 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 94-559 |
| Cow position: | chr18:51660437-51660908 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 216-560 |
| Cow position: | chr18:8168924-8169270 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 151 |
| Conread position: | 226-560 |
| Cow position: | chr18:46868330-46867996 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 52, 115 |
| Conread position: | 248-543 |
| Cow position: | chr18:51238546-51238849 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 84 |
| Conread position: | 249-563 |
| Cow position: | chr18:54003773-54004081 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 48, 16 |
| Conread position: | 257-559 |
| Cow position: | chr18:51341942-51342247 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 66 |
| Conread position: | 282-560 |
| Cow position: | chr18:29765259-29765541 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 315-564 |
| Cow position: | chr18:15855719-15855962 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 92, 36 |
| Conread position: | 334-564 |
| Cow position: | chr18:33750358-33750584 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 178 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 112, 100 |
| Conread position: | 336-560 |
| Cow position: | chr18:37505409-37505629 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 336-564 |
| Cow position: | chr18:14130735-14130963 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 49 |
| Conread position: | 336-564 |
| Cow position: | chr18:14416321-14416550 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr18:25351096-25351321 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 6 |
| Conread position: | 336-564 |
| Cow position: | chr18:32652548-32652773 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr18:36508678-36508905 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 340-564 |
| Cow position: | chr18:16176270-16176044 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 340-564 |
| Cow position: | chr18:40478730-40478955 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 340-564 |
| Cow position: | chr18:52651267-52651490 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 341-564 |
| Cow position: | chr18:33269174-33269396 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 345-481 |
| Cow position: | chr18:47719228-47719093 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 345-555 |
| Cow position: | chr18:54023769-54023562 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 345-564 |
| Cow position: | chr18:23798003-23798218 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 345-564 |
| Cow position: | chr18:41840469-41840252 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-487 |
| Cow position: | chr18:51258326-51258464 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 19, 15 |
| Conread position: | 346-559 |
| Cow position: | chr18:11274759-11274545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr18:19352729-19352932 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 346-559 |
| Cow position: | chr18:22602834-22603046 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 190 |
| Conread position: | 346-559 |
| Cow position: | chr18:24040385-24040164 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 173 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr18:33953228-33953016 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 157 |
| Conread position: | 346-559 |
| Cow position: | chr18:51462732-51462519 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 348-559 |
| Cow position: | chr18:55088575-55088360 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 349-487 |
| Cow position: | chr18:16534335-16534474 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 350-559 |
| Cow position: | chr18:43146570-43146368 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 350-564 |
| Cow position: | chr18:27987424-27987636 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 351-564 |
| Cow position: | chr18:33336221-33336437 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 355-564 |
| Cow position: | chr18:27837952-27837744 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 355-564 |
| Cow position: | chr18:28973538-28973317 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 356-474 |
| Cow position: | chr18:53786202-53786322 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 356-488 |
| Cow position: | chr18:17992056-17991925 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 13, 103 |
| Conread position: | 356-488 |
| Cow position: | chr18:24700748-24700616 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-564 |
| Cow position: | chr18:16088511-16088718 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 356-564 |
| Cow position: | chr18:51481200-51481406 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 358-487 |
| Cow position: | chr18:54044356-54044226 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 368-482 |
| Cow position: | chr18:2019307-2019193 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-487 |
| Cow position: | chr18:51310956-51311075 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 371-545 |
| Cow position: | chr18:32260137-32259960 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 384-482 |
| Cow position: | chr18:35335906-35336004 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 84 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-559 |
| Cow position: | chr18:54270913-54271073 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 409-515 |
| Cow position: | chr18:49671209-49671314 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
Show alignments to all cow chromosomes.