Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-361 |
| Cow position: | chr19:44532445-44532830 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 48, 359 |
| Conread position: | 1-381 |
| Cow position: | chr19:47610414-47610017 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 332 |
| Conread position: | 1-441 |
| Cow position: | chr19:43018-43469 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 94 |
| Conread position: | 1-557 |
| Cow position: | chr19:27052517-27051946 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 1-560 |
| Cow position: | chr19:163097-162535 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 58 |
| Conread position: | 1-564 |
| Cow position: | chr19:137023-136437 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 20 |
| Conread position: | 1-564 |
| Cow position: | chr19:352658-352076 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 57 |
| Conread position: | 6-525 |
| Cow position: | chr19:377575-377039 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 8-486 |
| Cow position: | chr19:263151-263646 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 49 |
| Conread position: | 93-529 |
| Cow position: | chr19:32182986-32182539 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 93-560 |
| Cow position: | chr19:3138021-3138510 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 290 |
| Conread position: | 210-475 |
| Cow position: | chr19:35377379-35377649 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 72, 157 |
| Conread position: | 218-478 |
| Cow position: | chr19:32222794-32222529 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 75, 117 |
| Conread position: | 219-445 |
| Cow position: | chr19:39689252-39689481 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 64, 132 |
| Conread position: | 225-558 |
| Cow position: | chr19:39669274-39668939 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 122 |
| Conread position: | 238-564 |
| Cow position: | chr19:32203399-32203722 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 243-443 |
| Cow position: | chr19:17019081-17019287 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 16, 108 |
| Conread position: | 257-556 |
| Cow position: | chr19:341481-341788 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 278-564 |
| Cow position: | chr19:35980442-35980716 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 137 |
| Conread position: | 281-564 |
| Cow position: | chr19:75960-75678 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 21, 99 |
| Conread position: | 330-564 |
| Cow position: | chr19:439096-438865 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 331-487 |
| Cow position: | chr19:4532284-4532132 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 331-564 |
| Cow position: | chr19:893264-893031 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 9 |
| Conread position: | 334-487 |
| Cow position: | chr19:32665869-32666023 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 334-559 |
| Cow position: | chr19:33444083-33443857 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 336-556 |
| Cow position: | chr19:39390858-39391079 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr19:5729179-5729402 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr19:33873776-33873997 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr19:33941960-33942178 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr19:39185196-39184969 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 337-518 |
| Cow position: | chr19:29135575-29135760 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 337-564 |
| Cow position: | chr19:28581310-28581084 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 338-487 |
| Cow position: | chr19:28376837-28376989 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 338-503 |
| Cow position: | chr19:417011-417174 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 338-559 |
| Cow position: | chr19:7342415-7342632 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 340-564 |
| Cow position: | chr19:7488665-7488888 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 342-564 |
| Cow position: | chr19:204312-204533 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 345-560 |
| Cow position: | chr19:172570-172777 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 346-534 |
| Cow position: | chr19:687414-687603 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 11, 91 |
| Conread position: | 346-559 |
| Cow position: | chr19:772950-773161 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 346-559 |
| Cow position: | chr19:5208523-5208737 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr19:32211722-32211508 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr19:43144067-43144278 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 20, 113 |
| Conread position: | 346-559 |
| Cow position: | chr19:52151479-52151265 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 349-529 |
| Cow position: | chr19:40817342-40817167 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 349-564 |
| Cow position: | chr19:40852077-40851863 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 189 |
| Conread position: | 350-560 |
| Cow position: | chr19:40887376-40887175 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 356-559 |
| Cow position: | chr19:28593626-28593829 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-564 |
| Cow position: | chr19:2274007-2273809 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 367-559 |
| Cow position: | chr19:38268-38460 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-503 |
| Cow position: | chr19:348414-348282 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 372-559 |
| Cow position: | chr19:43483-43663 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 388-529 |
| Cow position: | chr19:4386012-4386157 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 408-559 |
| Cow position: | chr19:20105125-20105276 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 130 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 409-558 |
| Cow position: | chr19:168185-168036 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 429-559 |
| Cow position: | chr19:5901059-5900930 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
Show alignments to all cow chromosomes.