Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-559 |
| Cow position: | chr20:18315317-18314794 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 33 |
| Conread position: | 84-564 |
| Cow position: | chr20:10840644-10840178 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 317 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 107, 21 |
| Conread position: | 92-547 |
| Cow position: | chr20:8215554-8216035 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 174 |
| Conread position: | 117-564 |
| Cow position: | chr20:2790824-2790372 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 244 |
| Conread position: | 128-357 |
| Cow position: | chr20:22207041-22207274 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 188-560 |
| Cow position: | chr20:10855184-10854817 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 217-494 |
| Cow position: | chr20:35104966-35105245 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 44, 120 |
| Conread position: | 217-564 |
| Cow position: | chr20:8993037-8992688 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 130 |
| Conread position: | 221-470 |
| Cow position: | chr20:3893301-3893555 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 232-552 |
| Cow position: | chr20:20754273-20753962 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 49, 29 |
| Conread position: | 244-559 |
| Cow position: | chr20:31377979-31377682 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 250-529 |
| Cow position: | chr20:4653748-4654020 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 139, 30 |
| Conread position: | 251-506 |
| Cow position: | chr20:7085468-7085198 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 253-483 |
| Cow position: | chr20:11591684-11591923 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 34, 156 |
| Conread position: | 278-564 |
| Cow position: | chr20:18324918-18324642 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 27, 13 |
| Conread position: | 304-517 |
| Cow position: | chr20:19051354-19051144 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 304-564 |
| Cow position: | chr20:8834924-8834666 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 106, 33 |
| Conread position: | 328-564 |
| Cow position: | chr20:16179512-16179282 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 330-563 |
| Cow position: | chr20:35124797-35125028 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 334-564 |
| Cow position: | chr20:13679746-13679508 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 336-556 |
| Cow position: | chr20:12438454-12438234 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-556 |
| Cow position: | chr20:30684627-30684846 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr20:5535244-5535469 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr20:15292317-15292538 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr20:23799192-23799418 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr20:27869504-27869734 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 336-564 |
| Cow position: | chr20:28161077-28161302 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr20:29948805-29949033 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 338-505 |
| Cow position: | chr20:10845815-10845647 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 138 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 340-482 |
| Cow position: | chr20:9104813-9104670 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 118 |
| Conread position: | 340-560 |
| Cow position: | chr20:15097568-15097347 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 340-564 |
| Cow position: | chr20:25850682-25850458 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr20:28565287-28565060 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 342-482 |
| Cow position: | chr20:15947068-15946928 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 342-559 |
| Cow position: | chr20:37580389-37580606 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 5, 65 |
| Conread position: | 345-564 |
| Cow position: | chr20:8003909-8003695 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-540 |
| Cow position: | chr20:19438248-19438442 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-559 |
| Cow position: | chr20:823075-823289 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr20:25961411-25961625 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr20:38350986-38351198 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 199 |
| Conread position: | 348-480 |
| Cow position: | chr20:3033382-3033513 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 351-482 |
| Cow position: | chr20:3251815-3251683 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 5, 113 |
| Conread position: | 354-564 |
| Cow position: | chr20:13763229-13763438 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 354-564 |
| Cow position: | chr20:21914652-21914861 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 354-564 |
| Cow position: | chr20:23469341-23469132 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 356-487 |
| Cow position: | chr20:3684162-3684028 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-560 |
| Cow position: | chr20:21393919-21394124 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 356-563 |
| Cow position: | chr20:3271030-3271231 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 128, 10 |
| Conread position: | 362-564 |
| Cow position: | chr20:22716999-22716798 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 367-555 |
| Cow position: | chr20:42076724-42076540 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 152 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 374-552 |
| Cow position: | chr20:19352875-19353052 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 66 |
| Conread position: | 398-564 |
| Cow position: | chr20:7115119-7114953 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 139 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 419-559 |
| Cow position: | chr20:38624396-38624535 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 420-564 |
| Cow position: | chr20:22697658-22697801 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 107, 65 |
Show alignments to all cow chromosomes.