Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-409 |
| Cow position: | chr21:4183926-4184331 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 1-413 |
| Cow position: | chr21:9870155-9870561 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 1-553 |
| Cow position: | chr21:9892007-9892574 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 360 |
| Conread position: | 1-560 |
| Cow position: | chr21:359442-360008 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 55 |
| Conread position: | 1-564 |
| Cow position: | chr21:23812284-23812824 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 19 |
| Conread position: | 5-558 |
| Cow position: | chr21:29182-29725 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 193 |
| Conread position: | 26-545 |
| Cow position: | chr21:2540979-2540454 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 326 |
| Conread position: | 85-529 |
| Cow position: | chr21:21926161-21925702 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 313 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 89-560 |
| Cow position: | chr21:21517716-21518165 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 18, 38 |
| Conread position: | 149-560 |
| Cow position: | chr21:2710744-2711146 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 35 |
| Conread position: | 158-492 |
| Cow position: | chr21:37324942-37324625 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 44, 20 |
| Conread position: | 169-564 |
| Cow position: | chr21:23861572-23861973 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 197-525 |
| Cow position: | chr21:6109850-6110174 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 18 |
| Conread position: | 211-559 |
| Cow position: | chr21:1689935-1689575 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 225-559 |
| Cow position: | chr21:21914997-21915332 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 25 |
| Conread position: | 238-560 |
| Cow position: | chr21:23602872-23603189 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 44, 103 |
| Conread position: | 243-465 |
| Cow position: | chr21:37292906-37293123 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 95 |
| Conread position: | 249-555 |
| Cow position: | chr21:25975598-25975914 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 227 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 31, 265 |
| Conread position: | 249-564 |
| Cow position: | chr21:12803739-12803407 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 246 |
| Conread position: | 249-564 |
| Cow position: | chr21:34053989-34053683 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 250-564 |
| Cow position: | chr21:4589655-4589339 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 27 |
| Conread position: | 256-508 |
| Cow position: | chr21:27565737-27565991 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 271-564 |
| Cow position: | chr21:4077188-4077480 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 282-543 |
| Cow position: | chr21:20744128-20743878 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 200, 45 |
| Conread position: | 291-560 |
| Cow position: | chr21:4093882-4094146 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 80, 26 |
| Conread position: | 308-503 |
| Cow position: | chr21:35596820-35597015 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 23, 178 |
| Conread position: | 316-559 |
| Cow position: | chr21:217307-217545 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 334-530 |
| Cow position: | chr21:30059112-30058921 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 336-556 |
| Cow position: | chr21:33251931-33252150 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-564 |
| Cow position: | chr21:2883323-2883094 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 48 |
| Conread position: | 336-564 |
| Cow position: | chr21:10567094-10567321 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr21:10850503-10850729 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr21:27282811-27283039 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-564 |
| Cow position: | chr21:30562228-30562455 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr21:30599500-30599275 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr21:31559230-31559007 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr21:35144182-35144409 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 340-487 |
| Cow position: | chr21:34293443-34293592 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 340-555 |
| Cow position: | chr21:2674184-2673971 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 340-560 |
| Cow position: | chr21:40271253-40271032 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-563 |
| Cow position: | chr21:3779194-3779420 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-563 |
| Cow position: | chr21:48116529-48116752 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 343-501 |
| Cow position: | chr21:2716284-2716132 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 346-491 |
| Cow position: | chr21:26638038-26637892 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-557 |
| Cow position: | chr21:4091076-4091287 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 65 |
| Conread position: | 346-557 |
| Cow position: | chr21:12055574-12055362 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:2476114-2475900 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:6339993-6340207 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:11406569-11406355 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:11453229-11453017 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 205 |
| Conread position: | 346-559 |
| Cow position: | chr21:11506023-11506237 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:26650468-26650682 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:37046047-37046261 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr21:39425490-39425702 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 346-559 |
| Cow position: | chr21:46916015-46916223 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 32 |
| Conread position: | 346-563 |
| Cow position: | chr21:37371672-37371890 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 348-564 |
| Cow position: | chr21:146360-146575 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 351-479 |
| Cow position: | chr21:2502329-2502458 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 354-564 |
| Cow position: | chr21:28735672-28735882 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 355-564 |
| Cow position: | chr21:467333-467538 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 162 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 356-475 |
| Cow position: | chr21:13123561-13123445 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 356-563 |
| Cow position: | chr21:13313209-13313417 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 358-564 |
| Cow position: | chr21:2416660-2416860 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 358-564 |
| Cow position: | chr21:7267091-7266879 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 367-559 |
| Cow position: | chr21:2511344-2511536 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-560 |
| Cow position: | chr21:1287738-1287578 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 401-560 |
| Cow position: | chr21:6622073-6622232 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 148, 116 |
| Conread position: | 404-563 |
| Cow position: | chr21:47949552-47949710 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 80, 110 |
| Conread position: | 408-564 |
| Cow position: | chr21:47941349-47941502 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 409-559 |
| Cow position: | chr21:18819672-18819522 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-564 |
| Cow position: | chr21:27070767-27070615 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 129 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 424-564 |
| Cow position: | chr21:1192264-1192404 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.