Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-431 |
| Cow position: | chr22:41419458-41419031 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 75 |
| Conread position: | 1-458 |
| Cow position: | chr22:1283423-1282947 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 373 |
| Conread position: | 1-487 |
| Cow position: | chr22:44609828-44610298 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 24, 85 |
| Conread position: | 1-560 |
| Cow position: | chr22:13917739-13918304 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 284 |
| Conread position: | 1-564 |
| Cow position: | chr22:3306499-3305922 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 327 |
| Conread position: | 1-564 |
| Cow position: | chr22:23853566-23854134 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 1-564 |
| Cow position: | chr22:35907483-35906915 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 41-356 |
| Cow position: | chr22:46547846-46548158 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 240 |
| Conread position: | 88-564 |
| Cow position: | chr22:1322129-1322601 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 40 |
| Conread position: | 129-404 |
| Cow position: | chr22:8740404-8740132 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 69, 139 |
| Conread position: | 129-564 |
| Cow position: | chr22:6503114-6502657 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 241 |
| Conread position: | 195-560 |
| Cow position: | chr22:11031865-11032224 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 199-468 |
| Cow position: | chr22:44475980-44476254 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 172 |
| Conread position: | 201-564 |
| Cow position: | chr22:15956055-15955702 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 213-487 |
| Cow position: | chr22:2395913-2395632 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 216-560 |
| Cow position: | chr22:1269659-1269319 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 83 |
| Conread position: | 228-564 |
| Cow position: | chr22:37132573-37132899 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 64 |
| Conread position: | 237-559 |
| Cow position: | chr22:5941127-5940819 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 252, 50 |
| Conread position: | 243-554 |
| Cow position: | chr22:36580642-36580335 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 37, 91 |
| Conread position: | 249-560 |
| Cow position: | chr22:11781994-11781678 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 269-563 |
| Cow position: | chr22:8148286-8148000 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 15, 67 |
| Conread position: | 275-564 |
| Cow position: | chr22:41239270-41239566 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 102, 66 |
| Conread position: | 277-560 |
| Cow position: | chr22:8875800-8876088 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 92, 19 |
| Conread position: | 278-564 |
| Cow position: | chr22:36552256-36551978 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 214, 13 |
| Conread position: | 282-564 |
| Cow position: | chr22:13674594-13674324 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 283-559 |
| Cow position: | chr22:36275619-36275903 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 300-527 |
| Cow position: | chr22:44095143-44094913 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 313-529 |
| Cow position: | chr22:34599626-34599848 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 8, 150 |
| Conread position: | 317-560 |
| Cow position: | chr22:13736326-13736089 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 110, 61 |
| Conread position: | 330-560 |
| Cow position: | chr22:44352727-44352506 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 335-564 |
| Cow position: | chr22:19143438-19143212 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 336-487 |
| Cow position: | chr22:1319650-1319797 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 336-564 |
| Cow position: | chr22:560452-560225 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr22:15313699-15313476 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 49 |
| Conread position: | 336-564 |
| Cow position: | chr22:18816133-18815906 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr22:31313592-31313819 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr22:31334785-31334558 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr22:34168584-34168810 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr22:36861277-36861054 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr22:44396695-44396922 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 340-512 |
| Cow position: | chr22:1522266-1522438 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 140 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-529 |
| Cow position: | chr22:13773149-13773337 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 17, 38 |
| Conread position: | 340-564 |
| Cow position: | chr22:17328484-17328260 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 340-564 |
| Cow position: | chr22:39469268-39469042 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 340-564 |
| Cow position: | chr22:42991427-42991651 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-529 |
| Cow position: | chr22:44490141-44490323 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-557 |
| Cow position: | chr22:537355-537565 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 11, 87 |
| Conread position: | 346-557 |
| Cow position: | chr22:24950350-24950562 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:693877-694092 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:1879047-1879260 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 116 |
| Conread position: | 346-559 |
| Cow position: | chr22:3278102-3277888 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:6020916-6021131 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:16814140-16814354 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:18027533-18027747 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr22:20240588-20240376 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 346-559 |
| Cow position: | chr22:27284285-27284499 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 346-559 |
| Cow position: | chr22:27309519-27309309 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 74 |
| Conread position: | 346-559 |
| Cow position: | chr22:35672102-35671888 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-560 |
| Cow position: | chr22:46581334-46581119 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 346-563 |
| Cow position: | chr22:48004794-48005013 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 155 |
| Conread position: | 348-559 |
| Cow position: | chr22:10909577-10909367 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 119 |
| Conread position: | 349-564 |
| Cow position: | chr22:21589591-21589809 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 114, 11 |
| Conread position: | 351-487 |
| Cow position: | chr22:39881910-39881777 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 351-560 |
| Cow position: | chr22:525427-525219 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 22 |
| Conread position: | 351-560 |
| Cow position: | chr22:46630784-46630574 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 120 |
| Conread position: | 351-563 |
| Cow position: | chr22:15851580-15851794 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 351-564 |
| Cow position: | chr22:36184022-36184229 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 7, 108 |
| Conread position: | 351-564 |
| Cow position: | chr22:44934245-44934456 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 353-559 |
| Cow position: | chr22:326902-326699 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 163 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 353-559 |
| Cow position: | chr22:44369363-44369159 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 354-560 |
| Cow position: | chr22:8739950-8739744 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-472 |
| Cow position: | chr22:38937811-38937688 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-481 |
| Cow position: | chr22:1861011-1861136 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 356-481 |
| Cow position: | chr22:42771727-42771850 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 40 |
| Conread position: | 356-485 |
| Cow position: | chr22:46853614-46853743 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 108, 120 |
| Conread position: | 356-487 |
| Cow position: | chr22:36533469-36533337 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 357-490 |
| Cow position: | chr22:117570-117436 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 357-560 |
| Cow position: | chr22:12731404-12731200 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 159 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 363-559 |
| Cow position: | chr22:5233010-5232814 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-560 |
| Cow position: | chr22:1520734-1520545 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 365-564 |
| Cow position: | chr22:5308381-5308580 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 159 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 407-560 |
| Cow position: | chr22:5932510-5932356 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 149 |
Show alignments to all cow chromosomes.