Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-169 |
| Cow position: | chr23:1402648-1402481 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 48, 125 |
| Conread position: | 178-559 |
| Cow position: | chr23:16615348-16614964 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 197 |
| Conread position: | 199-476 |
| Cow position: | chr23:19331896-19331621 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 212-496 |
| Cow position: | chr23:22875178-22874916 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 216-492 |
| Cow position: | chr23:7046530-7046251 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 12, 116 |
| Conread position: | 222-563 |
| Cow position: | chr23:9545714-9546057 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 145 |
| Conread position: | 224-563 |
| Cow position: | chr23:4752744-4753073 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 225-443 |
| Cow position: | chr23:31650074-31649862 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 141, 55 |
| Conread position: | 244-564 |
| Cow position: | chr23:15877604-15877294 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 72 |
| Conread position: | 249-564 |
| Cow position: | chr23:1402332-1402017 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 127 |
| Conread position: | 300-564 |
| Cow position: | chr23:13509863-13510137 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 317-508 |
| Cow position: | chr23:6217101-6217291 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 318-564 |
| Cow position: | chr23:25683807-25683560 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 43 |
| Conread position: | 327-529 |
| Cow position: | chr23:5874395-5874202 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 161 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 327-564 |
| Cow position: | chr23:11968576-11968812 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 335-564 |
| Cow position: | chr23:36031125-36030898 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 336-498 |
| Cow position: | chr23:30636048-30635888 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-563 |
| Cow position: | chr23:4888926-4889146 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 336-564 |
| Cow position: | chr23:967097-966862 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 47 |
| Conread position: | 336-564 |
| Cow position: | chr23:2716641-2716868 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 77 |
| Conread position: | 336-564 |
| Cow position: | chr23:2757847-2758075 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 47 |
| Conread position: | 336-564 |
| Cow position: | chr23:4640371-4640150 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr23:14965499-14965272 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr23:27399756-27399979 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 25 |
| Conread position: | 337-557 |
| Cow position: | chr23:3014642-3014866 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 337-564 |
| Cow position: | chr23:15525864-15526091 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 338-563 |
| Cow position: | chr23:4434706-4434931 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 340-560 |
| Cow position: | chr23:2026864-2026643 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 340-563 |
| Cow position: | chr23:20155959-20155737 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 340-564 |
| Cow position: | chr23:4510332-4510555 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 159 |
| Conread position: | 340-564 |
| Cow position: | chr23:19489797-19490021 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 341-476 |
| Cow position: | chr23:5778831-5778695 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 345-470 |
| Cow position: | chr23:12887650-12887525 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 345-491 |
| Cow position: | chr23:988385-988239 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 345-559 |
| Cow position: | chr23:17786067-17785854 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 345-564 |
| Cow position: | chr23:11778751-11778968 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-557 |
| Cow position: | chr23:28217544-28217756 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr23:2312986-2312771 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 20, 151 |
| Conread position: | 346-559 |
| Cow position: | chr23:4360084-4360296 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 0 |
| Conread position: | 346-559 |
| Cow position: | chr23:20302466-20302679 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 346-559 |
| Cow position: | chr23:31447069-31447283 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 348-559 |
| Cow position: | chr23:19950332-19950119 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 350-564 |
| Cow position: | chr23:15177336-15177550 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 35 |
| Conread position: | 351-553 |
| Cow position: | chr23:14974298-14974089 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 351-563 |
| Cow position: | chr23:16616580-16616367 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 351-564 |
| Cow position: | chr23:15219630-15219424 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 351-564 |
| Cow position: | chr23:22146988-22146774 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 353-560 |
| Cow position: | chr23:29452048-29451847 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 355-564 |
| Cow position: | chr23:28913665-28913872 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 356-563 |
| Cow position: | chr23:31594976-31594772 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 58 |
| Conread position: | 356-564 |
| Cow position: | chr23:2574807-2575013 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 356-564 |
| Cow position: | chr23:2781942-2781735 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 368-487 |
| Cow position: | chr23:8980055-8979936 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-559 |
| Cow position: | chr23:29141070-29141259 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 105 |
| Conread position: | 374-559 |
| Cow position: | chr23:23830249-23830428 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 152 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 407-564 |
| Cow position: | chr23:4817338-4817495 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 132 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-543 |
| Cow position: | chr23:1024700-1024567 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 413-562 |
| Cow position: | chr23:2794907-2794759 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 454-560 |
| Cow position: | chr23:28108025-28108131 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr23:27970903-27971013 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr23:28025032-28025142 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 454-564 |
| Cow position: | chr23:28077736-28077844 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 454-564 |
| Cow position: | chr23:28368156-28368047 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.