Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-564 |
| Cow position: | chr24:16648995-16648418 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 41 |
| Conread position: | 1-564 |
| Cow position: | chr24:36559765-36559196 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 114 |
| Conread position: | 2-410 |
| Cow position: | chr24:12797446-12797029 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 127 |
| Conread position: | 57-564 |
| Cow position: | chr24:12206258-12205746 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 54 |
| Conread position: | 99-488 |
| Cow position: | chr24:40654885-40655290 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 99-528 |
| Cow position: | chr24:36708345-36708794 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 114-564 |
| Cow position: | chr24:38637650-38638107 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 151-564 |
| Cow position: | chr24:7091033-7090603 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 156-521 |
| Cow position: | chr24:17313396-17313028 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 153 |
| Conread position: | 162-541 |
| Cow position: | chr24:14280925-14280545 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 197-547 |
| Cow position: | chr24:27734707-27735034 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 204-520 |
| Cow position: | chr24:8152236-8151942 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 215-518 |
| Cow position: | chr24:583530-583212 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 226 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 216-564 |
| Cow position: | chr24:6336061-6336418 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 153 |
| Conread position: | 220-564 |
| Cow position: | chr24:14882249-14881896 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 225-464 |
| Cow position: | chr24:43889530-43889761 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 72, 152 |
| Conread position: | 225-549 |
| Cow position: | chr24:13302322-13301989 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 143 |
| Conread position: | 232-560 |
| Cow position: | chr24:14333707-14334025 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 232 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 47, 101 |
| Conread position: | 233-560 |
| Cow position: | chr24:16472125-16472456 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 100 |
| Conread position: | 238-553 |
| Cow position: | chr24:6048828-6049139 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 35, 100 |
| Conread position: | 238-564 |
| Cow position: | chr24:14872746-14872399 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 42, 189 |
| Conread position: | 243-505 |
| Cow position: | chr24:32332263-32332527 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 244-554 |
| Cow position: | chr24:9188495-9188180 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 68 |
| Conread position: | 249-560 |
| Cow position: | chr24:6669903-6669589 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 118 |
| Conread position: | 251-564 |
| Cow position: | chr24:6538198-6538525 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 276-560 |
| Cow position: | chr24:12237515-12237798 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 147, 31 |
| Conread position: | 321-555 |
| Cow position: | chr24:37217337-37217564 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 321-564 |
| Cow position: | chr24:7881536-7881768 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 38, 64 |
| Conread position: | 324-505 |
| Cow position: | chr24:12232649-12232468 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 336-558 |
| Cow position: | chr24:29187622-29187843 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr24:12335436-12335210 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr24:19833724-19833951 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 338-487 |
| Cow position: | chr24:35838284-35838132 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 339-560 |
| Cow position: | chr24:9091945-9091721 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 340-564 |
| Cow position: | chr24:148278-148049 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 340-564 |
| Cow position: | chr24:22971431-22971652 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 342-482 |
| Cow position: | chr24:14585423-14585558 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 342-496 |
| Cow position: | chr24:12162198-12162351 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 346-559 |
| Cow position: | chr24:5992889-5992673 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:6434580-6434793 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 21 |
| Conread position: | 346-559 |
| Cow position: | chr24:6646040-6646254 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:8030491-8030706 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:12484977-12484764 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 346-559 |
| Cow position: | chr24:13188513-13188727 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:22793512-22793730 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:29305983-29305769 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:32846059-32846272 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 346-559 |
| Cow position: | chr24:33739000-33738785 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:40549214-40549419 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 346-559 |
| Cow position: | chr24:43814104-43814317 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 154 |
| Conread position: | 346-559 |
| Cow position: | chr24:44017874-44018087 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 349-564 |
| Cow position: | chr24:5889202-5888988 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 10, 121 |
| Conread position: | 351-564 |
| Cow position: | chr24:4415177-4414964 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 351-564 |
| Cow position: | chr24:12130622-12130410 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 77 |
| Conread position: | 351-564 |
| Cow position: | chr24:33933718-33933932 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 352-559 |
| Cow position: | chr24:6024756-6024551 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 11 |
| Conread position: | 354-564 |
| Cow position: | chr24:17696621-17696412 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 355-542 |
| Cow position: | chr24:12086556-12086743 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 364-487 |
| Cow position: | chr24:37300942-37300820 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 367-487 |
| Cow position: | chr24:19773482-19773362 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 368-564 |
| Cow position: | chr24:14390190-14389995 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 377-560 |
| Cow position: | chr24:30900750-30900576 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 383-559 |
| Cow position: | chr24:16084277-16084101 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 147 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-556 |
| Cow position: | chr24:1449638-1449807 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 128 |
| Conread position: | 392-559 |
| Cow position: | chr24:7061781-7061948 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 144 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 397-559 |
| Cow position: | chr24:6084463-6084625 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 138 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 398-553 |
| Cow position: | chr24:12796815-12796663 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 405-563 |
| Cow position: | chr24:6660095-6659937 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 132 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 412-564 |
| Cow position: | chr24:14754594-14754441 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 422-564 |
| Cow position: | chr24:6145851-6145994 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 427-559 |
| Cow position: | chr24:23505440-23505308 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.