Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 81-486 |
| Cow position: | chr25:20494764-20495172 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 100, 62 |
| Conread position: | 127-559 |
| Cow position: | chr25:11933038-11932585 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 215-564 |
| Cow position: | chr25:18254795-18254457 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 88 |
| Conread position: | 216-559 |
| Cow position: | chr25:18422209-18422547 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 268, 45 |
| Conread position: | 217-558 |
| Cow position: | chr25:23344736-23344384 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 118 |
| Conread position: | 220-564 |
| Cow position: | chr25:18094378-18094720 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 230-545 |
| Cow position: | chr25:24217244-24216929 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 275-564 |
| Cow position: | chr25:3378108-3377832 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 276-527 |
| Cow position: | chr25:33665442-33665196 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 301-564 |
| Cow position: | chr25:25263636-25263377 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 37 |
| Conread position: | 317-564 |
| Cow position: | chr25:18274704-18274460 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 330-523 |
| Cow position: | chr25:25506955-25507149 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 336-564 |
| Cow position: | chr25:12942405-12942178 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr25:18889720-18889493 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr25:26279554-26279768 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 344-487 |
| Cow position: | chr25:18027144-18026999 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 345-564 |
| Cow position: | chr25:9544366-9544580 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 345-564 |
| Cow position: | chr25:17560335-17560116 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 190 |
| Conread position: | 346-521 |
| Cow position: | chr25:35362133-35361957 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-529 |
| Cow position: | chr25:27022270-27022080 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 346-557 |
| Cow position: | chr25:19917380-19917592 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr25:6172199-6172413 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr25:13550734-13550520 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr25:17589258-17589043 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr25:18194802-18194588 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr25:32580261-32580474 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 16 |
| Conread position: | 349-560 |
| Cow position: | chr25:13781336-13781548 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 350-563 |
| Cow position: | chr25:18303708-18303924 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 351-487 |
| Cow position: | chr25:11375041-11374899 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 351-564 |
| Cow position: | chr25:8675224-8675437 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 33 |
| Conread position: | 351-564 |
| Cow position: | chr25:24659561-24659774 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 136 |
| Conread position: | 354-564 |
| Cow position: | chr25:34014175-34013964 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 354-564 |
| Cow position: | chr25:34346704-34346496 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 356-460 |
| Cow position: | chr25:14016479-14016584 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 356-482 |
| Cow position: | chr25:17468388-17468261 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 386-549 |
| Cow position: | chr25:33244607-33244765 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 150, 46 |
| Conread position: | 388-563 |
| Cow position: | chr25:26879538-26879711 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 411-564 |
| Cow position: | chr25:22147907-22148059 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 132 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 413-559 |
| Cow position: | chr25:20775556-20775410 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 130 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 436-563 |
| Cow position: | chr25:18175671-18175796 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 457-564 |
| Cow position: | chr25:20630045-20630152 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.