Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-564 |
| Cow position: | chr27:26555769-26555187 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 366 |
| Conread position: | 149-557 |
| Cow position: | chr27:1138450-1138850 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 30 |
| Conread position: | 199-495 |
| Cow position: | chr27:6009836-6010129 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 79, 95 |
| Conread position: | 199-559 |
| Cow position: | chr27:27498710-27499059 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 90, 132 |
| Conread position: | 215-500 |
| Cow position: | chr27:27196502-27196220 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 250-559 |
| Cow position: | chr27:16034238-16033926 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 73 |
| Conread position: | 251-563 |
| Cow position: | chr27:27753039-27752725 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 72 |
| Conread position: | 255-557 |
| Cow position: | chr27:28891776-28892067 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 265-560 |
| Cow position: | chr27:6013980-6014261 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 67, 22 |
| Conread position: | 276-519 |
| Cow position: | chr27:8567917-8568154 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 182 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 332-487 |
| Cow position: | chr27:16439582-16439734 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 336-564 |
| Cow position: | chr27:893460-893687 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr27:9992950-9992723 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 336-564 |
| Cow position: | chr27:15638117-15637893 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 339-564 |
| Cow position: | chr27:9329978-9330201 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 340-564 |
| Cow position: | chr27:14460201-14459977 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 341-564 |
| Cow position: | chr27:23335421-23335643 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 345-469 |
| Cow position: | chr27:25002272-25002149 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 345-564 |
| Cow position: | chr27:1209614-1209829 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-559 |
| Cow position: | chr27:15541583-15541797 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-560 |
| Cow position: | chr27:25804642-25804434 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 166 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 348-560 |
| Cow position: | chr27:15277806-15277594 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 197 |
| Conread position: | 356-564 |
| Cow position: | chr27:28078719-28078920 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 368-564 |
| Cow position: | chr27:5911146-5911341 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 160 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 408-560 |
| Cow position: | chr27:27663265-27663417 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 128 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-564 |
| Cow position: | chr27:15037268-15037112 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 130 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-564 |
| Cow position: | chr27:15046493-15046647 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 415-564 |
| Cow position: | chr27:28080628-28080770 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 419-560 |
| Cow position: | chr27:26325401-26325542 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 123 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 422-564 |
| Cow position: | chr27:22318083-22318225 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 113 |
Show alignments to all cow chromosomes.