Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-394 |
| Cow position: | chr28:7817419-7817822 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 87 |
| Conread position: | 1-418 |
| Cow position: | chr28:5764527-5764954 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 294 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 48, 80 |
| Conread position: | 1-513 |
| Cow position: | chr28:21359282-21359811 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 351 |
| Conread position: | 1-556 |
| Cow position: | chr28:7790004-7789437 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 37 |
| Conread position: | 1-560 |
| Cow position: | chr28:10071260-10071802 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 153 |
| Conread position: | 1-564 |
| Cow position: | chr28:5812969-5813533 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 51 |
| Conread position: | 2-239 |
| Cow position: | chr28:2989425-2989179 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 6-556 |
| Cow position: | chr28:5797716-5798260 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 150 |
| Conread position: | 54-564 |
| Cow position: | chr28:14913523-14914040 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 342 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 72-404 |
| Cow position: | chr28:28117845-28118197 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 129, 12 |
| Conread position: | 215-460 |
| Cow position: | chr28:29092397-29092146 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 159 |
| Conread position: | 215-471 |
| Cow position: | chr28:32330527-32330273 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 15, 24 |
| Conread position: | 216-411 |
| Cow position: | chr28:24704408-24704609 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 75, 194 |
| Conread position: | 225-547 |
| Cow position: | chr28:10617637-10617322 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 112 |
| Conread position: | 231-560 |
| Cow position: | chr28:2989048-2988723 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 99 |
| Conread position: | 238-529 |
| Cow position: | chr28:10497821-10497528 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 239-467 |
| Cow position: | chr28:29436669-29436437 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 24, 102 |
| Conread position: | 239-560 |
| Cow position: | chr28:5801186-5801518 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 239-560 |
| Cow position: | chr28:22233211-22232886 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 243-563 |
| Cow position: | chr28:6656321-6655990 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 33, 12 |
| Conread position: | 244-445 |
| Cow position: | chr28:8721148-8720946 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 18, 141 |
| Conread position: | 244-560 |
| Cow position: | chr28:10230015-10229700 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 50, 65 |
| Conread position: | 247-430 |
| Cow position: | chr28:14946845-14947026 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 255-564 |
| Cow position: | chr28:26489519-26489825 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 36 |
| Conread position: | 327-543 |
| Cow position: | chr28:12229904-12229695 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 330-564 |
| Cow position: | chr28:782687-782915 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 330-564 |
| Cow position: | chr28:3020458-3020227 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 335-564 |
| Cow position: | chr28:18520154-18519926 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 17, 185 |
| Conread position: | 336-529 |
| Cow position: | chr28:14705374-14705182 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr28:34594276-34594498 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:1505161-1505389 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-564 |
| Cow position: | chr28:5114001-5113774 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:5566442-5566673 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 47 |
| Conread position: | 336-564 |
| Cow position: | chr28:5751408-5751181 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:5937773-5938003 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:17388779-17389006 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 48 |
| Conread position: | 336-564 |
| Cow position: | chr28:17667000-17666775 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 336-564 |
| Cow position: | chr28:22260853-22260627 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 336-564 |
| Cow position: | chr28:26425954-26425727 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:29820031-29820259 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:32792083-32791854 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr28:33252609-33252829 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 337-564 |
| Cow position: | chr28:7002288-7002513 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 337-564 |
| Cow position: | chr28:10581686-10581461 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 340-560 |
| Cow position: | chr28:12150603-12150823 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 340-564 |
| Cow position: | chr28:1814568-1814345 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 45 |
| Conread position: | 340-564 |
| Cow position: | chr28:12409926-12409704 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 340-564 |
| Cow position: | chr28:13460269-13460493 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 345-564 |
| Cow position: | chr28:1167574-1167358 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 346-500 |
| Cow position: | chr28:30805389-30805234 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr28:485264-485050 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 346-559 |
| Cow position: | chr28:1953428-1953642 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-559 |
| Cow position: | chr28:6780035-6779824 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 42 |
| Conread position: | 346-559 |
| Cow position: | chr28:7822556-7822770 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 346-564 |
| Cow position: | chr28:14750845-14751063 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 347-559 |
| Cow position: | chr28:6538962-6538749 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 349-487 |
| Cow position: | chr28:9154977-9154841 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 17, 73 |
| Conread position: | 350-564 |
| Cow position: | chr28:1387093-1386882 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 354-563 |
| Cow position: | chr28:7740796-7741002 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 354-564 |
| Cow position: | chr28:2083909-2084116 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 356-482 |
| Cow position: | chr28:9954449-9954571 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 356-485 |
| Cow position: | chr28:24652805-24652671 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-488 |
| Cow position: | chr28:7901678-7901810 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 128 |
| Conread position: | 376-512 |
| Cow position: | chr28:24667946-24668080 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 391-564 |
| Cow position: | chr28:3191895-3191732 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 392-564 |
| Cow position: | chr28:2724577-2724405 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 402-560 |
| Cow position: | chr28:8720937-8720778 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 138 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 404-559 |
| Cow position: | chr28:24588447-24588604 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 404-559 |
| Cow position: | chr28:24589209-24589366 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 415-564 |
| Cow position: | chr28:24704874-24705016 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 430-559 |
| Cow position: | chr28:7882008-7881880 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 436-564 |
| Cow position: | chr28:5765158-5765282 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 446-559 |
| Cow position: | chr28:7880928-7881041 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.