Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8026J10.5 |
| Conread position: | 1-228 |
| Cow position: | chr29:5982961-5982734 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 48, 142 |
| Conread position: | 1-564 |
| Cow position: | chr29:14086205-14085645 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 134 |
| Conread position: | 156-557 |
| Cow position: | chr29:15949478-15949068 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 46, 153 |
| Conread position: | 178-559 |
| Cow position: | chr29:802821-802445 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 50 |
| Conread position: | 216-445 |
| Cow position: | chr29:9617429-9617663 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 61, 115 |
| Conread position: | 216-564 |
| Cow position: | chr29:105168-105525 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 258 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 217-564 |
| Cow position: | chr29:9854362-9854010 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 47, 14 |
| Conread position: | 220-476 |
| Cow position: | chr29:31488162-31488429 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 119 |
| Conread position: | 222-559 |
| Cow position: | chr29:16174734-16174398 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 236-560 |
| Cow position: | chr29:34799651-34799324 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 34 |
| Conread position: | 238-562 |
| Cow position: | chr29:8062328-8062009 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 103 |
| Conread position: | 255-564 |
| Cow position: | chr29:16016596-16016290 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 50 |
| Conread position: | 257-559 |
| Cow position: | chr29:13582242-13582545 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 66 |
| Conread position: | 276-559 |
| Cow position: | chr29:5982496-5982233 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 282-387 |
| Cow position: | chr29:17663159-17663265 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 287-467 |
| Cow position: | chr29:250932-251118 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 293-527 |
| Cow position: | chr29:4634177-4633944 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 123, 35 |
| Conread position: | 314-559 |
| Cow position: | chr29:6212771-6213021 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 336-558 |
| Cow position: | chr29:19653371-19653586 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-560 |
| Cow position: | chr29:2690163-2690386 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-563 |
| Cow position: | chr29:16022793-16023021 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:2100108-2100335 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:14586185-14586405 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:19622984-19622758 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:20251422-20251648 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:23976103-23976324 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 26 |
| Conread position: | 336-564 |
| Cow position: | chr29:32540073-32540298 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:38227243-38227469 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 25 |
| Conread position: | 336-564 |
| Cow position: | chr29:45459979-45460205 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 47 |
| Conread position: | 338-560 |
| Cow position: | chr29:10647988-10647765 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 338-564 |
| Cow position: | chr29:39079447-39079222 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 46 |
| Conread position: | 340-559 |
| Cow position: | chr29:7430954-7430734 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 340-564 |
| Cow position: | chr29:10823704-10823480 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 208 |
| Conread position: | 340-564 |
| Cow position: | chr29:25932279-25932053 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 340-564 |
| Cow position: | chr29:26164557-26164333 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 44 |
| Conread position: | 341-491 |
| Cow position: | chr29:12796116-12795967 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 16, 58 |
| Conread position: | 342-559 |
| Cow position: | chr29:19885330-19885546 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 342-564 |
| Cow position: | chr29:40502718-40502494 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 345-560 |
| Cow position: | chr29:43322827-43323039 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 345-564 |
| Cow position: | chr29:410252-410036 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 345-564 |
| Cow position: | chr29:6266228-6266010 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 15 |
| Conread position: | 345-564 |
| Cow position: | chr29:45587096-45586878 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 346-559 |
| Cow position: | chr29:610348-610135 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 159 |
| Conread position: | 346-559 |
| Cow position: | chr29:15894586-15894372 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr29:15968597-15968383 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 346-559 |
| Cow position: | chr29:27250078-27249865 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 108 |
| Conread position: | 346-559 |
| Cow position: | chr29:31181679-31181883 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 20, 119 |
| Conread position: | 346-559 |
| Cow position: | chr29:34925743-34925956 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 206 |
| Conread position: | 346-559 |
| Cow position: | chr29:35297138-35297348 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 16 |
| Conread position: | 346-560 |
| Cow position: | chr29:669793-669578 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 346-563 |
| Cow position: | chr29:18856680-18856462 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 203 |
| Conread position: | 348-557 |
| Cow position: | chr29:27980653-27980446 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 18, 65 |
| Conread position: | 349-564 |
| Cow position: | chr29:9643484-9643270 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 35 |
| Conread position: | 351-475 |
| Cow position: | chr29:34300493-34300369 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 5, 116 |
| Conread position: | 351-479 |
| Cow position: | chr29:16770399-16770526 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 33 |
| Conread position: | 351-560 |
| Cow position: | chr29:2841097-2840891 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 106 |
| Conread position: | 351-564 |
| Cow position: | chr29:5957880-5958089 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 7, 27 |
| Conread position: | 351-564 |
| Cow position: | chr29:21426754-21426540 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 354-564 |
| Cow position: | chr29:48199-47983 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 356-487 |
| Cow position: | chr29:21543087-21542955 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-487 |
| Cow position: | chr29:27040490-27040358 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-487 |
| Cow position: | chr29:35196946-35197078 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 356-560 |
| Cow position: | chr29:42650547-42650752 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 356-560 |
| Cow position: | chr29:42802407-42802612 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 374-559 |
| Cow position: | chr29:7844624-7844809 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 374-559 |
| Cow position: | chr29:16110709-16110893 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.