Cow genome map

Conread name: Ss1.1-Pig4-TMW8026J10.5

Conread position: 1-189
Cow position:
Alignm length: 190
Alignm identity: 133
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 48, 120

Conread position: 1-212
Cow position:
Alignm length: 216
Alignm identity: 158
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 48, 82

Conread position: 1-214
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 48, 0

Conread position: 1-214
Cow position:
Alignm length: 218
Alignm identity: 152
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 48, 142

Conread position: 1-214
Cow position:
Alignm length: 217
Alignm identity: 157
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 198, 11

Conread position: 1-540
Cow position:
Alignm length: 565
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 153

Conread position: 1-560
Cow position:
Alignm length: 580
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 68

Conread position: 1-564
Cow position:
Alignm length: 583
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 267

Conread position: 88-556
Cow position:
Alignm length: 489
Alignm identity: 316
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 92, 13

Conread position: 89-564
Cow position:
Alignm length: 494
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 259

Conread position: 116-559
Cow position:
Alignm length: 453
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 10

Conread position: 137-449
Cow position:
Alignm length: 324
Alignm identity: 217
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 224

Conread position: 156-543
Cow position:
Alignm length: 394
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 65

Conread position: 198-559
Cow position:
Alignm length: 373
Alignm identity: 249
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 27, 55

Conread position: 199-432
Cow position:
Alignm length: 237
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 19, 71

Conread position: 209-556
Cow position:
Alignm length: 362
Alignm identity: 251
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 70, 148

Conread position: 209-559
Cow position:
Alignm length: 367
Alignm identity: 243
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 95, 19

Conread position: 216-488
Cow position:
Alignm length: 291
Alignm identity: 213
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 32

Conread position: 216-557
Cow position:
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 39

Conread position: 216-560
Cow position:
Alignm length: 354
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 258

Conread position: 216-564
Cow position:
Alignm length: 349
Alignm identity: 253
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 40, 0

Conread position: 218-564
Cow position:
Alignm length: 353
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 127

Conread position: 220-564
Cow position:
Alignm length: 357
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 117

Conread position: 225-402
Cow position:
Alignm length: 181
Alignm identity: 128
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 50, 79

Conread position: 226-564
Cow position:
Alignm length: 350
Alignm identity: 236
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 54, 0

Conread position: 231-379
Cow position:
Alignm length: 157
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 131

Conread position: 232-428
Cow position:
Alignm length: 201
Alignm identity: 142
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 106

Conread position: 233-527
Cow position:
Alignm length: 295
Alignm identity: 206
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 0

Conread position: 233-564
Cow position:
Alignm length: 350
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 244

Conread position: 236-560
Cow position:
Alignm length: 332
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 34

Conread position: 237-560
Cow position:
Alignm length: 337
Alignm identity: 233
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 32, 159

Conread position: 238-564
Cow position:
Alignm length: 335
Alignm identity: 235
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 40, 122

Conread position: 238-564
Cow position:
Alignm length: 334
Alignm identity: 225
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 39, 128

Conread position: 243-556
Cow position:
Alignm length: 317
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 249-537
Cow position:
Alignm length: 303
Alignm identity: 211
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 14, 84

Conread position: 249-557
Cow position:
Alignm length: 314
Alignm identity: 209
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 178, 19

Conread position: 250-564
Cow position:
Alignm length: 317
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 82

Conread position: 251-563
Cow position:
Alignm length: 313
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 256-560
Cow position:
Alignm length: 311
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 133

Conread position: 259-465
Cow position:
Alignm length: 209
Alignm identity: 149
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 8

Conread position: 266-553
Cow position:
Alignm length: 288
Alignm identity: 205
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 14, 0

Conread position: 274-558
Cow position:
Alignm length: 288
Alignm identity: 191
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 134, 17

Conread position: 277-560
Cow position:
Alignm length: 288
Alignm identity: 201
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 162, 31

Conread position: 281-504
Cow position:
Alignm length: 228
Alignm identity: 143
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 22, 106

Conread position: 309-564
Cow position:
Alignm length: 258
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 13

Conread position: 316-550
Cow position:
Alignm length: 244
Alignm identity: 168
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 42, 18

Conread position: 324-560
Cow position:
Alignm length: 240
Alignm identity: 180
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 13, 51

Conread position: 327-564
Cow position:
Alignm length: 243
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 228

Conread position: 327-564
Cow position:
Alignm length: 238
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 330-564
Cow position:
Alignm length: 236
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 331-510
Cow position:
Alignm length: 188
Alignm identity: 136
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 5, 44

Conread position: 333-564
Cow position:
Alignm length: 233
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 27

Conread position: 336-487
Cow position:
Alignm length: 154
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 6

Conread position: 336-515
Cow position:
Alignm length: 181
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-524
Cow position:
Alignm length: 191
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 25

Conread position: 336-529
Cow position:
Alignm length: 195
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-559
Cow position:
Alignm length: 225
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 26

Conread position: 336-560
Cow position:
Alignm length: 226
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 230
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 230
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 231
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 229
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 336-564
Cow position:
Alignm length: 232
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position:
Alignm length: 230
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 8, 25

Conread position: 337-555
Cow position:
Alignm length: 219
Alignm identity: 150
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 105, 0

Conread position: 337-564
Cow position:
Alignm length: 230
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 47

Conread position: 338-474
Cow position:
Alignm length: 140
Alignm identity: 109
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 338-545
Cow position:
Alignm length: 209
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 340-460
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 340-560
Cow position:
Alignm length: 222
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 340-564
Cow position:
Alignm length: 225
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 340-564
Cow position:
Alignm length: 226
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 164

Conread position: 340-564
Cow position:
Alignm length: 226
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 342-487
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 342-559
Cow position:
Alignm length: 219
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 342-559
Cow position:
Alignm length: 220
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 62

Conread position: 342-564
Cow position:
Alignm length: 231
Alignm identity: 162
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 49, 0

Conread position: 345-557
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 143

Conread position: 345-564
Cow position:
Alignm length: 220
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 0

Conread position: 346-478
Cow position:
Alignm length: 133
Alignm identity: 106
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 346-557
Cow position:
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-557
Cow position:
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-558
Cow position:
Alignm length: 213
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 102

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 203

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position:
Alignm length: 216
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position:
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 117

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position:
Alignm length: 214
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position:
Alignm length: 217
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position:
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 346-559
Cow position:
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-563
Cow position:
Alignm length: 219
Alignm identity: 164
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 16, 0

Conread position: 346-563
Cow position:
Alignm length: 220
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 346-564
Cow position:
Alignm length: 220
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 38

Conread position: 348-474
Cow position:
Alignm length: 128
Alignm identity: 100
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 22, 111

Conread position: 348-564
Cow position:
Alignm length: 217
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 349-488
Cow position:
Alignm length: 142
Alignm identity: 111
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 9, 116

Conread position: 349-506
Cow position:
Alignm length: 159
Alignm identity: 126
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 349-543
Cow position:
Alignm length: 195
Alignm identity: 155
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 23, 0

Conread position: 349-559
Cow position:
Alignm length: 212
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 349-560
Cow position:
Alignm length: 214
Alignm identity: 166
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 7, 47

Conread position: 350-560
Cow position:
Alignm length: 213
Alignm identity: 169
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 9, 62

Conread position: 351-487
Cow position:
Alignm length: 138
Alignm identity: 108
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 11, 0

Conread position: 351-557
Cow position:
Alignm length: 209
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 137

Conread position: 351-557
Cow position:
Alignm length: 208
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 351-564
Cow position:
Alignm length: 227
Alignm identity: 172
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 7, 108

Conread position: 351-564
Cow position:
Alignm length: 225
Alignm identity: 172
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 7, 108

Conread position: 351-564
Cow position:
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 351-564
Cow position:
Alignm length: 215
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 33

Conread position: 354-564
Cow position:
Alignm length: 211
Alignm identity: 165
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 0

Conread position: 354-564
Cow position:
Alignm length: 211
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 355-559
Cow position:
Alignm length: 205
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 356-464
Cow position:
Alignm length: 110
Alignm identity: 94
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 356-487
Cow position:
Alignm length: 133
Alignm identity: 109
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 13, 49

Conread position: 356-487
Cow position:
Alignm length: 133
Alignm identity: 106
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 28

Conread position: 356-506
Cow position:
Alignm length: 152
Alignm identity: 118
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 20, 124

Conread position: 356-559
Cow position:
Alignm length: 204
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 357-487
Cow position:
Alignm length: 132
Alignm identity: 107
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 12, 0

Conread position: 357-519
Cow position:
Alignm length: 163
Alignm identity: 126
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 368-480
Cow position:
Alignm length: 113
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 368-487
Cow position:
Alignm length: 120
Alignm identity: 96
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 388-560
Cow position:
Alignm length: 173
Alignm identity: 143
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 388-563
Cow position:
Alignm length: 176
Alignm identity: 141
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 396-564
Cow position:
Alignm length: 169
Alignm identity: 143
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 8, 0

Conread position: 398-559
Cow position:
Alignm length: 167
Alignm identity: 128
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 85, 151

Conread position: 399-557
Cow position:
Alignm length: 159
Alignm identity: 137
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 406-564
Cow position:
Alignm length: 159
Alignm identity: 128
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 409-556
Cow position:
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 135, 0

Conread position: 413-555
Cow position:
Alignm length: 143
Alignm identity: 122
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 420-559
Cow position:
Alignm length: 140
Alignm identity: 121
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 426-560
Cow position:
Alignm length: 135
Alignm identity: 105
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 57, 0

Conread position: 431-564
Cow position:
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 107

Conread position: 451-559
Cow position:
Alignm length: 109
Alignm identity: 94
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 459-564
Cow position:
Alignm length: 106
Alignm identity: 85
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.