Cow genome map

Conread name: Ss1.1-Pig4-TMW8026J10.5

Conread position: 1-357
Cow position: chr8:44693767-44694126 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 255
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 138, 30

Conread position: 1-554
Cow position: chr8:42161253-42160702 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 41

Conread position: 1-560
Cow position: chr8:58187034-58186496 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 67

Conread position: 1-563
Cow position: chr8:38607041-38606475 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 15

Conread position: 1-564
Cow position: chr8:11970109-11969558 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 26

Conread position: 1-564
Cow position: chr8:24420056-24419480 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 37

Conread position: 1-564
Cow position: chr8:45160892-45160348 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 99

Conread position: 2-409
Cow position: chr8:44076403-44075993 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 31

Conread position: 41-280
Cow position: chr8:33430434-33430693 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 100, 0

Conread position: 72-564
Cow position: chr8:61034797-61034293 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 15

Conread position: 94-464
Cow position: chr8:42467987-42468361 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 105, 27

Conread position: 205-543
Cow position: chr8:11563912-11564253 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 228
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 126

Conread position: 215-564
Cow position: chr8:47673539-47673876 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 106, 0

Conread position: 216-517
Cow position: chr8:48786564-48786856 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 73, 49

Conread position: 216-564
Cow position: chr8:16760810-16760441 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 243
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 67, 113

Conread position: 225-547
Cow position: chr8:45692761-45692450 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 229
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 95, 79

Conread position: 232-544
Cow position: chr8:47081237-47081559 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 232
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 46, 33

Conread position: 232-564
Cow position: chr8:45169173-45168840 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 210
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 30

Conread position: 238-560
Cow position: chr8:38577973-38577662 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 97

Conread position: 239-564
Cow position: chr8:24874722-24874392 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 75, 41

Conread position: 250-563
Cow position: chr8:47074677-47074987 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 11, 24

Conread position: 254-521
Cow position: chr8:9133904-9133638 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 181
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 39

Conread position: 270-560
Cow position: chr8:19188671-19188953 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 207
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 13, 65

Conread position: 287-560
Cow position: chr8:12717410-12717682 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 208

Conread position: 306-521
Cow position: chr8:33430866-33431083 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 319-490
Cow position: chr8:45316618-45316450 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 15

Conread position: 321-564
Cow position: chr8:38585831-38585590 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 52, 110

Conread position: 327-529
Cow position: chr8:42658366-42658155 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 34

Conread position: 330-560
Cow position: chr8:42419942-42419714 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 12

Conread position: 330-564
Cow position: chr8:7161385-7161617 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 334-564
Cow position: chr8:4686893-4687121 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 335-564
Cow position: chr8:8911007-8911231 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 336-482
Cow position: chr8:27925814-27925961 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 8, 0

Conread position: 336-489
Cow position: chr8:59262394-59262244 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 30

Conread position: 336-556
Cow position: chr8:25522898-25523125 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-560
Cow position: chr8:14591403-14591183 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 336-560
Cow position: chr8:39195718-39195493 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 31

Conread position: 336-563
Cow position: chr8:3856517-3856290 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 48

Conread position: 336-563
Cow position: chr8:12449447-12449672 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 336-564
Cow position: chr8:5016680-5016907 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr8:17311517-17311745 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 49

Conread position: 336-564
Cow position: chr8:23771134-23771360 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 0

Conread position: 336-564
Cow position: chr8:32319050-32318831 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr8:36636045-36635819 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr8:38390867-38391091 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr8:42484411-42484638 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 25

Conread position: 336-564
Cow position: chr8:47661826-47661599 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 336-564
Cow position: chr8:51667796-51667569 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 336-564
Cow position: chr8:60060879-60061102 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 0

Conread position: 338-487
Cow position: chr8:45189584-45189737 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 114

Conread position: 340-560
Cow position: chr8:44244072-44243852 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 340-560
Cow position: chr8:49214928-49215156 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 340-564
Cow position: chr8:10743129-10742905 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 45

Conread position: 340-564
Cow position: chr8:19050977-19051202 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 45

Conread position: 340-564
Cow position: chr8:19330237-19330461 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 44

Conread position: 340-564
Cow position: chr8:24915836-24915616 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 341-564
Cow position: chr8:45448959-45449199 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 173
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 341-564
Cow position: chr8:47885523-47885747 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 108

Conread position: 342-529
Cow position: chr8:11832200-11832389 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 155
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 43

Conread position: 342-559
Cow position: chr8:30891820-30891602 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 159

Conread position: 342-560
Cow position: chr8:25408229-25408446 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 41

Conread position: 346-559
Cow position: chr8:1153807-1153595 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 38

Conread position: 346-559
Cow position: chr8:1319545-1319758 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 163
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 11, 50

Conread position: 346-559
Cow position: chr8:2886251-2886464 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 140

Conread position: 346-559
Cow position: chr8:6065268-6065054 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr8:6683947-6684161 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr8:8518083-8517869 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr8:9275511-9275725 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 165
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 20, 144

Conread position: 346-559
Cow position: chr8:9735747-9735961 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr8:15711916-15711702 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr8:27578902-27579111 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 169
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 96

Conread position: 346-559
Cow position: chr8:32437580-32437370 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 168
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 11, 125

Conread position: 346-559
Cow position: chr8:32631527-32631313 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 166
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 0

Conread position: 346-559
Cow position: chr8:34348178-34348392 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr8:37931591-37931805 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 346-559
Cow position: chr8:45797815-45797601 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 348-559
Cow position: chr8:47069303-47069092 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 51

Conread position: 351-557
Cow position: chr8:8229269-8229062 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 351-560
Cow position: chr8:46944407-46944192 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 0

Conread position: 351-560
Cow position: chr8:50994298-50994507 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 163
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 5, 33

Conread position: 351-564
Cow position: chr8:2170867-2170652 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 0

Conread position: 351-564
Cow position: chr8:11821824-11822038 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 15, 0

Conread position: 352-543
Cow position: chr8:12542932-12542747 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 145
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 353-559
Cow position: chr8:1348726-1348516 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 161
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 142, 170

Conread position: 354-564
Cow position: chr8:33588891-33589100 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 355-560
Cow position: chr8:25776155-25775951 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 28

Conread position: 356-557
Cow position: chr8:21158316-21158121 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 79, 0

Conread position: 356-560
Cow position: chr8:8315931-8315733 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 159
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 106, 27

Conread position: 357-564
Cow position: chr8:11802339-11802545 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 361-555
Cow position: chr8:77073-76889 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 144
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 170, 17

Conread position: 368-488
Cow position: chr8:27983260-27983141 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 0

Conread position: 373-564
Cow position: chr8:30487856-30487660 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 11, 0

Conread position: 374-559
Cow position: chr8:8556619-8556433 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 377-559
Cow position: chr8:10748896-10749076 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 148
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 87, 0

Conread position: 392-559
Cow position: chr8:9275729-9275897 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 72, 125

Conread position: 394-560
Cow position: chr8:50930575-50930409 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 142
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 398-564
Cow position: chr8:44694371-44694537 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 134
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 404-564
Cow position: chr8:22571751-22571591 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 138
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 408-560
Cow position: chr8:14928315-14928163 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 129
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 408-564
Cow position: chr8:50288357-50288202 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 136
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 78, 0

Conread position: 409-564
Cow position: chr8:8401545-8401390 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 131
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 426-560
Cow position: chr8:11762526-11762659 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 427-564
Cow position: chr8:41944009-41944149 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 430-564
Cow position: chr8:41646134-41646004 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 109
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 0

Conread position: 436-557
Cow position: chr8:44074912-44074791 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.