Cow genome map

Conread name: Ss1.1-Pig4-TMW8026L24.3

Conread position: 2-204
Cow position: chr27:16427806-16427597 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 134, 35

Conread position: 2-220
Cow position: chr27:10283088-10282864 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 116, 9

Conread position: 2-220
Cow position: chr27:25801062-25801287 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 130, 32

Conread position: 2-220
Cow position: chr27:27045326-27045101 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 164
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 120, 24

Conread position: 2-220
Cow position: chr27:27556949-27556726 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 171
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 130, 32

Conread position: 2-222
Cow position: chr27:3760011-3759789 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 120, 32

Conread position: 3-115
Cow position: chr27:19488146-19488035 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 3-120
Cow position: chr27:9990055-9990171 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 3-131
Cow position: chr27:3990658-3990785 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-131
Cow position: chr27:12281839-12281713 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 3-137
Cow position: chr27:12277253-12277120 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 101
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 3-163
Cow position: chr27:30307127-30307293 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 119, 38

Conread position: 3-165
Cow position: chr27:19424235-19424405 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 94, 31

Conread position: 3-197
Cow position: chr27:525957-526157 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 130, 35

Conread position: 3-203
Cow position: chr27:4768577-4768370 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 158
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 119, 35

Conread position: 3-204
Cow position: chr27:21204066-21204273 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 149
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 106, 34

Conread position: 3-208
Cow position: chr27:5914075-5913868 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 152
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 116, 34

Conread position: 3-208
Cow position: chr27:10379328-10379117 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 158
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 112, 31

Conread position: 3-218
Cow position: chr27:27729345-27729567 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 161
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 120, 155

Conread position: 3-220
Cow position: chr27:165777-165999 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 168
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 113, 31

Conread position: 3-220
Cow position: chr27:1082020-1082244 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 129, 31

Conread position: 3-220
Cow position: chr27:1520822-1520598 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 119, 31

Conread position: 3-220
Cow position: chr27:2000988-2000763 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 85, 35

Conread position: 3-220
Cow position: chr27:2557849-2558073 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 130, 31

Conread position: 3-220
Cow position: chr27:4982514-4982290 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 113, 31

Conread position: 3-220
Cow position: chr27:5925415-5925191 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 119, 31

Conread position: 3-220
Cow position: chr27:7912122-7911901 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 119, 21

Conread position: 3-220
Cow position: chr27:8959887-8960111 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 128, 35

Conread position: 3-220
Cow position: chr27:8972586-8972363 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 118, 31

Conread position: 3-220
Cow position: chr27:10579089-10578864 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 116, 31

Conread position: 3-220
Cow position: chr27:11434317-11434094 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 128, 31

Conread position: 3-220
Cow position: chr27:12146501-12146725 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 172
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 119, 35

Conread position: 3-220
Cow position: chr27:12750167-12749951 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 164
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 119, 31

Conread position: 3-220
Cow position: chr27:13308786-13308562 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 173
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 119, 35

Conread position: 3-220
Cow position: chr27:13353448-13353224 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 174
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 119, 35

Conread position: 3-220
Cow position: chr27:13901036-13900812 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 119, 31

Conread position: 3-220
Cow position: chr27:14297349-14297136 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 35, 0

Conread position: 3-220
Cow position: chr27:15544157-15543933 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 119, 35

Conread position: 3-220
Cow position: chr27:15925777-15926001 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 171
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 127, 31

Conread position: 3-220
Cow position: chr27:16031255-16031479 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 129, 45

Conread position: 3-220
Cow position: chr27:17568243-17568021 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 128, 34

Conread position: 3-220
Cow position: chr27:19523566-19523790 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 170
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 88, 31

Conread position: 3-220
Cow position: chr27:20810563-20810339 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 119, 31

Conread position: 3-220
Cow position: chr27:22647764-22647988 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 130, 35

Conread position: 3-220
Cow position: chr27:24296127-24296349 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 113, 31

Conread position: 3-220
Cow position: chr27:25799398-25799177 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 117, 31

Conread position: 3-220
Cow position: chr27:26330074-26329851 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 113, 33

Conread position: 3-220
Cow position: chr27:26784964-26784740 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 132, 31

Conread position: 3-220
Cow position: chr27:26856200-26855984 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 170, 45

Conread position: 3-220
Cow position: chr27:27666149-27665919 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 34

Conread position: 3-220
Cow position: chr27:27849412-27849188 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 168
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 129, 35

Conread position: 3-220
Cow position: chr27:29811469-29811249 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 114, 57

Conread position: 3-220
Cow position: chr27:30584024-30584242 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 127, 31

Conread position: 3-220
Cow position: chr27:31249384-31249164 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 12, 17

Conread position: 3-220
Cow position: chr27:31268359-31268144 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 12, 17

Conread position: 3-221
Cow position: chr27:5990902-5991125 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 162
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 119, 31

Conread position: 3-222
Cow position: chr27:5983888-5984114 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 119, 31

Conread position: 3-225
Cow position: chr27:27234965-27235192 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 130, 31

Conread position: 3-231
Cow position: chr27:15634200-15634426 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 31, 0

Conread position: 3-231
Cow position: chr27:27291531-27291300 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 177
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 119, 31

Conread position: 3-233
Cow position: chr27:4331598-4331834 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 120, 31

Conread position: 4-220
Cow position: chr27:15272927-15273154 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 166
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 133, 30

Conread position: 5-168
Cow position: chr27:18473390-18473226 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 110, 29

Conread position: 7-131
Cow position: chr27:2681458-2681336 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 7-131
Cow position: chr27:8429140-8429017 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 95
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 7-131
Cow position: chr27:11481069-11480946 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 7-171
Cow position: chr27:19932428-19932595 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 125, 27

Conread position: 7-220
Cow position: chr27:1188804-1188573 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 115, 27

Conread position: 7-220
Cow position: chr27:3232396-3232616 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 169
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 116, 27

Conread position: 7-220
Cow position: chr27:8426995-8426776 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 162
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 124, 27

Conread position: 10-153
Cow position: chr27:8290980-8290831 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 56

Conread position: 10-220
Cow position: chr27:30035952-30035733 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 81, 24

Conread position: 10-222
Cow position: chr27:21451580-21451361 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 168
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 24

Conread position: 11-187
Cow position: chr27:219673-219850 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 111, 13

Conread position: 11-269
Cow position: chr27:22797523-22797787 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 111, 27

Conread position: 12-220
Cow position: chr27:15405772-15405567 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 146
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 129, 28

Conread position: 13-220
Cow position: chr27:25971469-25971682 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 169
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 118, 21

Conread position: 14-206
Cow position: chr27:28895139-28894940 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 68, 11

Conread position: 18-220
Cow position: chr27:21342655-21342447 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 159
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 114, 16

Conread position: 19-204
Cow position: chr27:9255016-9255205 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 110, 18

Conread position: 19-220
Cow position: chr27:23074824-23075028 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 148
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 111, 15

Conread position: 19-220
Cow position: chr27:30571955-30571751 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 117, 19

Conread position: 21-220
Cow position: chr27:7667908-7667701 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 101, 0

Conread position: 27-205
Cow position: chr27:3751359-3751174 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 107, 133

Conread position: 27-220
Cow position: chr27:8726697-8726501 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 106, 81

Conread position: 27-220
Cow position: chr27:21284112-21284311 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 92, 129

Conread position: 29-233
Cow position: chr27:24571686-24571896 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 104, 152

Conread position: 30-214
Cow position: chr27:1845760-1845952 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 30-220
Cow position: chr27:29446960-29447158 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 92, 0

Conread position: 30-228
Cow position: chr27:27193249-27193455 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 100, 0

Conread position: 36-187
Cow position: chr27:3994195-3994354 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 0

Conread position: 45-191
Cow position: chr27:27278825-27278673 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 83, 0

Conread position: 50-220
Cow position: chr27:29036273-29036451 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 83, 0

Conread position: 63-220
Cow position: chr27:1536261-1536099 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 71, 18

Conread position: 68-220
Cow position: chr27:22723433-22723272 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 71-220
Cow position: chr27:22742339-22742496 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 227-337
Cow position: chr27:19741638-19741523 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 72, 20

Show alignments to all cow chromosomes.